RLG00000002658

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004892
Physical Location & Seq
Reverse (-)
37650090 .. 37650540
451 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002658

Sequence Viewer

Length: 360 bp
ATGAGTCCTCTATCGAAAACTATGATTCCCCTTGTGCTGTTGTTCTGCATCCTCACAACCACCATTGAGCACACACATGCTCTTACGTTTTGCAAAATATTTCGATGCCCAAAGCGCACCACCGTTAGAGTAACCAACCGTTTGGAAAGCAATGAGGTCCTGACTGTCCACTGTAAATCGAAAGATGATGACCTCGCTTTCAATGGGGGAATGAATTCAAGCGGTTCGATATTTTCATTGCTAACAGGGATCATTGCACTGAATGCTTTTGGGATGTCTATGAAAGAGGCCCGTGTTTGGAAAATAACCAAGGTCAAGTTGGTTATTGCCTACCGTGGAAGTAATCGGACCCCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

120

Amino Acids

13.25

Weight (kDa)

9.9

Isoelectric Point (pI)

24.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 41 - 67 1e-05 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 297
AgsI TTSAA 2 cut(s) 202, 219
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 1 cut(s) 257
AoxI GGCC 1 cut(s) 288
ApoI RAATTY 1 cut(s) 214
Asp700I GAANNNNTTC 1 cut(s) 214
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 3 cut(s) 157, 289, 348
AvaII GGWCC 2 cut(s) 157, 348
Bbv12I GWGCWC 1 cut(s) 72
Bme18I GGWCC 2 cut(s) 157, 348
BmgT120I GGNCC 3 cut(s) 157, 289, 348
BmiI GGNNCC 1 cut(s) 350
BmsI GCATC 2 cut(s) 57, 95
BsaJI CCNNGG 2 cut(s) 309, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 297
Bse3DI GCAATG 3 cut(s) 157, 236, 252
BseDI CCNNGG 2 cut(s) 309, 334
BseGI GGATG 2 cut(s) 48, 279
BseLI CCNNNNNNNGG 1 cut(s) 297
BseMI GCAATG 3 cut(s) 157, 236, 252
BshFI GGCC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 297
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 249
BspACI CCGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 350
BspPI GGATC 1 cut(s) 257
BsrDI GCAATG 3 cut(s) 157, 236, 252
BssECI CCNNGG 2 cut(s) 309, 334
BssMI GATC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 309
Bst4CI ACNGT 5 cut(s) 124, 140, 166, 173, 335
BstAPI GCANNNNNTGC 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 48, 279
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 2 cut(s) 114, 263
BstNSI RCATGY 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 48, 279
BtsIMutI CAGTG 2 cut(s) 169, 257
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 3 cut(s) 157, 289, 348
CviAII CATG 1 cut(s) 77
CviJI RGCY 1 cut(s) 290
CviKI_1 RGCY 1 cut(s) 290
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 157, 348
EcoO109I RGGNCCY 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 1 cut(s) 80
FaiI YATR 4 cut(s) 23, 78, 281, 358
FatI CATG 1 cut(s) 76
FokI GGATG 2 cut(s) 35, 286
GlaI GCGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 290
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HinfI GANTC 2 cut(s) 4, 25
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4III ACNGT 5 cut(s) 124, 140, 166, 173, 335
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 48, 93, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 263
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 249
LpnPI CCDG 2 cut(s) 173, 231
LweI GCATC 2 cut(s) 57, 95
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 5 cut(s) 18, 62, 148, 203, 280
MroXI GAANNNNTTC 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 114, 263
NdeII GATC 1 cut(s) 249
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 350
NspI RCATGY 1 cut(s) 80
PctI GAATGC 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 25
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 3 cut(s) 157, 289, 348
PspPPI RGGWCCY 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 75
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 3 cut(s) 157, 289, 348
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 72
SetI ASST 4 cut(s) 89, 159, 195, 315
SfaNI GCATC 2 cut(s) 57, 95
SinI GGWCC 2 cut(s) 157, 348
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 214
SsiI CCGC 1 cut(s) 222
SspI AATATT 1 cut(s) 99
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 5 cut(s) 124, 140, 166, 173, 335
TaiI ACGT 1 cut(s) 89
TaqI TCGA 4 cut(s) 14, 103, 179, 227
TasI AATT 1 cut(s) 214
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 2 cut(s) 176, 264
TspDTI ATGAA 3 cut(s) 225, 227, 296
TspRI CASTG 2 cut(s) 176, 264
VpaK11BI GGWCC 2 cut(s) 157, 348
XapI RAATTY 1 cut(s) 214
XceI RCATGY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.