Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Reverse (-)

27521780 .. 27522836

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25871.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGACAAAGACCAGTACGTTGTACATTAGATTATCGTCGATGCTTACAAAAGAAGTCCCATACAGCACAACCATGGCATCAGTTGATCTCTTTCATTGTCTGATTCTCACCCTATTTTTGAGTCTGTTTCCTCAAGCTTTTTCCCTTGCTGCTTCTCCCACAACTTCTGTCATAGTCCCTTTCCAGTGCTCTGCAACAATCGCTACATGTAATGCCTCACTATACCACATCAACAGCGGTTTTCAGAAAGAAGAAATCGCCTCTTTGTACTCTGTCGATCTATCTCAAGTCAAACCTATAAAGTATAGCAATAGAGAAGATCTTCTCATAAGTGTACCTTGTTCTTGCAAAAACATATCCGGCACTACTGGATATTTCTATGATACAATCTACAAAGTGAAATTGTCAGACACATTTTCTGATGTATCGAATAATATCTACAGTGGGCAAGCTTTATCTGTCATAGAAGAACAAAAGAAAAACTTTACTATAGGATCTGATTTTCCCATTCATCTTCCTTGTGGGTGTGTAGATGGTGATTCTCAGATTGTGGTAACATACACAGTTCAAGAGAAAGATACACTGACAGATATCGGCAGTCTGCTCTCTGCCAAGATAGAAAACATTGAAACAATGAACAAGAAACTGGTTGAGAACCCGTCATTCATAGTTCTCGGTTGGGTGTTGTTTGTGCCCTCGGAAAAGAATGGACTTAAAAAGCCAGGTGAGCTCTGTTTCAGATCCATTCTCTTTTTCTTTGTGTTTCAGCACGATATAGAGATGTTATTTGTTGCATGCTGGTGTATCATTAATTTGTTGGTCAGCAATTTTCATAAAAACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

282

Amino Acids

31.41

Weight (kDa)

5.74

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	2 cut(s)	502, 735
AfaI	GTAC	4 cut(s)	16, 23, 269, 336
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	569, 629
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	3 cut(s)	137, 452, 730
AluI	AGCT	3 cut(s)	137, 452, 730
Alw21I	GWGCWC	2 cut(s)	191, 732
AlwI	GGATC	2 cut(s)	502, 735
ApeKI	GCWGC	1 cut(s)	149
AseI	ATTAAT	1 cut(s)	810
Asp700I	GAANNNNTTC	1 cut(s)	321
AsuHPI	GGTGA	3 cut(s)	100, 548, 737
BaeGI	GKGCMC	1 cut(s)	696
BanII	GRGCYC	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	191, 732
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	1 cut(s)	527
BciT130I	CCWGG	1 cut(s)	723
BfmI	CTRYAG	2 cut(s)	439, 489
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	723
BmrFI	CCNGG	1 cut(s)	723
BmsI	GCATC	2 cut(s)	30, 86
BpuEI	CTTGAG	2 cut(s)	117, 270
BsaJI	CCNNGG	2 cut(s)	72, 696
Bse1I	ACTGG	4 cut(s)	12, 184, 373, 651
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	72, 696
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	4 cut(s)	12, 184, 373, 651
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	191, 732
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	2 cut(s)	41, 161
BsmFI	GGGAC	2 cut(s)	41, 161
Bsp1286I	GDGCHC	3 cut(s)	191, 696, 732
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	5 cut(s)	85, 277, 319, 494, 740
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	556
BspPI	GGATC	2 cut(s)	502, 735
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	4 cut(s)	12, 184, 373, 651
BssECI	CCNNGG	2 cut(s)	72, 696
BssMI	GATC	5 cut(s)	85, 277, 319, 494, 740
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	2 cut(s)	443, 565
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	450, 796
BstDEI	CTNAG	1 cut(s)	543
BstDSI	CCRYGG	1 cut(s)	72
BstKTI	GATC	5 cut(s)	88, 280, 322, 497, 743
BstMBI	GATC	5 cut(s)	85, 277, 319, 494, 740
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 727
BstNI	CCWGG	1 cut(s)	723
BstNSI	RCATGY	2 cut(s)	210, 798
BstSCI	CCNGG	1 cut(s)	721
BstSFI	CTRYAG	2 cut(s)	439, 489
BstSLI	GKGCMC	1 cut(s)	696
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	3 cut(s)	319, 494, 740
BstYI	RGATCY	3 cut(s)	319, 494, 740
BtgI	CCRYGG	1 cut(s)	72
BtsIMutI	CAGTG	3 cut(s)	191, 448, 581
Cac8I	GCNNGC	2 cut(s)	450, 796
Csp6I	GTAC	4 cut(s)	15, 22, 268, 335
CviAII	CATG	3 cut(s)	73, 207, 795
CviJI	RGCY	4 cut(s)	137, 452, 721, 730
CviKI_1	RGCY	4 cut(s)	137, 452, 721, 730
CviQI	GTAC	4 cut(s)	15, 22, 268, 335
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	5 cut(s)	87, 279, 321, 496, 742
DpnII	GATC	5 cut(s)	85, 277, 319, 494, 740
Ecl136II	GAGCTC	1 cut(s)	730
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	732
Eco32I	GATATC	1 cut(s)	592
Eco53kI	GAGCTC	1 cut(s)	730
EcoICRI	GAGCTC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	721
EcoRV	GATATC	1 cut(s)	592
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	732
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	76, 210, 798
FalI	AAGNNNNNCTT	4 cut(s)	322, 354, 467, 499
FaqI	GGGAC	2 cut(s)	41, 161
FatI	CATG	3 cut(s)	72, 206, 794
Fnu4HI	GCNGC	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	732
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
HapII	CCGG	1 cut(s)	360
Hin1II	CATG	3 cut(s)	76, 210, 798
HindIII	AAGCTT	2 cut(s)	135, 450
HinfI	GANTC	3 cut(s)	103, 121, 539
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	3 cut(s)	100, 548, 737
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	8 cut(s)	102, 246, 409, 421, 499, 546, 700, 740
Hpy188III	TCNNGA	1 cut(s)	569
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	2 cut(s)	443, 565
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	194, 348, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 727
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	3 cut(s)	76, 210, 798
Kzo9I	GATC	5 cut(s)	85, 277, 319, 494, 740
LpnPI	CCDG	8 cut(s)	25, 197, 354, 373, 632, 708, 735, 784
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	30, 86
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	5 cut(s)	87, 279, 321, 496, 742
MboI	GATC	5 cut(s)	85, 277, 319, 494, 740
MboII	GAAGA	5 cut(s)	263, 314, 329, 479, 506
MflI	RGATCY	3 cut(s)	319, 494, 740
MhlI	GDGCHC	3 cut(s)	191, 696, 732
MluCI	AATT	3 cut(s)	401, 811, 826
MlyI	GAGTC	1 cut(s)	130
MnlI	CCTC	4 cut(s)	141, 226, 271, 706
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	2 cut(s)	714, 810
MslI	CAYNNNNRTG	2 cut(s)	71, 799
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	2 cut(s)	200, 727
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	5 cut(s)	85, 277, 319, 494, 740
NlaIII	CATG	3 cut(s)	76, 210, 798
NspI	RCATGY	2 cut(s)	210, 798
PaeI	GCATGC	1 cut(s)	798
PciI	ACATGT	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	103, 539
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PscI	ACATGT	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	810
Psp124BI	GAGCTC	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PsuI	RGATCY	3 cut(s)	319, 494, 740
RsaI	GTAC	4 cut(s)	16, 23, 269, 336
RsaNI	GTAC	4 cut(s)	15, 22, 268, 335
RseI	CAYNNNNRTG	2 cut(s)	71, 799
SacI	GAGCTC	1 cut(s)	732
SaqAI	TTAA	2 cut(s)	714, 810
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	5 cut(s)	85, 277, 319, 494, 740
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	723
SduI	GDGCHC	3 cut(s)	191, 696, 732
SetI	ASST	7 cut(s)	20, 139, 298, 340, 454, 727, 732
SfaNI	GCATC	2 cut(s)	30, 86
SfcI	CTRYAG	2 cut(s)	439, 489
SmiMI	CAYNNNNRTG	2 cut(s)	71, 799
SmlI	CTYRAG	2 cut(s)	132, 285
SmoI	CTYRAG	2 cut(s)	132, 285
SphI	GCATGC	1 cut(s)	798
Sse9I	AATT	3 cut(s)	401, 811, 826
SsiI	CCGC	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	732
StyD4I	CCNGG	1 cut(s)	721
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	443, 565
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	3 cut(s)	38, 276, 428
TasI	AATT	3 cut(s)	401, 811, 826
TatI	WGTACW	2 cut(s)	21, 267
TfiI	GAWTC	2 cut(s)	103, 539
Tru1I	TTAA	2 cut(s)	714, 810
Tru9I	TTAA	2 cut(s)	714, 810
TscAI	CASTG	3 cut(s)	191, 448, 588
TseI	GCWGC	1 cut(s)	149
TspDTI	ATGAA	5 cut(s)	83, 500, 650, 655, 821
TspRI	CASTG	3 cut(s)	191, 448, 588
VspI	ATTAAT	1 cut(s)	810
XceI	RCATGY	2 cut(s)	210, 798
XmnI	GAANNNNTTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.