Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Reverse (-)

56575855 .. 56583590

Gene Structure 7736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCTCAATTGGTTCACTTACATCAAGTTCTTCTTGCTGCAGAAACTTTTGAGAATGATAGACCTGTTATATATACTATGGAGGAGATCAAAGAGGCTACAAATAACTTTGACGATACAAGAAAGATTGGGGAGGGTGGATACGGTTGTGTTTACTTTGCCATAATAGGAGAAGTAGAAGTTGCAATTAAGAATATGAGATCTACCAGAACAAAAGAATTCTTTGCTGAGCTCAAGGTGTTATGCAAGATACATCATAACAATGTGGTGGAGCTGCTAGGATATGCTAGTGGAGGTGAACATCTTTGTTTGGTATATGAGTTTGTTCAGAATGGATCTCTCAACGACCATCTTCATGATCCATTGTTGAAAGGTCGCCAACCTCTTTCATGGACTGCAAGAGCACAAATAGCACTGGATACTGCAAGAGGGATTGAATACATTCATGATCACACGAAGAAACGCTATGTCCACCGTGATATAAAAACGAGTAATATTCTACTTGATGAAGGACTCAGAGCCAAGGTACAACACAACCATCCTTGGGCCTCTTATGAAAGTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

188

Amino Acids

21.54

Weight (kDa)

6.3

Isoelectric Point (pI)

21.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	38 - 171	3.8e-25	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	40 - 176	3.5e-28	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	343, 353
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	1 cut(s)	544
AgsI	TTSAA	2 cut(s)	370, 437
AluBI	AGCT	2 cut(s)	232, 274
AluI	AGCT	2 cut(s)	232, 274
Alw21I	GWGCWC	2 cut(s)	234, 406
AlwI	GGATC	2 cut(s)	343, 353
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	38, 274
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	546
AsuHPI	GGTGA	1 cut(s)	308
BaeI	ACNNNNGTAYC	2 cut(s)	133, 166
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	2 cut(s)	234, 406
BbvI	GCAGC	2 cut(s)	25, 261
BccI	CCATC	2 cut(s)	357, 546
BciVI	GTATCC	2 cut(s)	134, 412
BclI	TGATCA	1 cut(s)	448
BfaI	CTAG	3 cut(s)	278, 288, 565
BfmI	CTRYAG	1 cut(s)	39
BfuI	GTATCC	2 cut(s)	134, 412
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	39, 275
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	2 cut(s)	40, 276
BmgT120I	GGNCC	1 cut(s)	546
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	522, 542
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse1I	ACTGG	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	522, 542
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMII	CTCAG	2 cut(s)	219, 529
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	25, 261
BshFI	GGCC	1 cut(s)	548
BsiHKAI	GWGCWC	2 cut(s)	234, 406
BslI	CCNNNNNNNGG	1 cut(s)	544
BsnI	GGCC	1 cut(s)	548
Bsp1286I	GDGCHC	2 cut(s)	234, 406
Bsp143I	GATC	5 cut(s)	87, 200, 335, 358, 448
Bsp1720I	GCTNAGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	2 cut(s)	220, 528
BspHI	TCATGA	2 cut(s)	355, 445
BspMAI	CTGCAG	1 cut(s)	43
BspPI	GGATC	2 cut(s)	343, 353
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	522, 542
BssMI	GATC	5 cut(s)	87, 200, 335, 358, 448
BssT1I	CCWWGG	2 cut(s)	522, 542
Bst4CI	ACNGT	2 cut(s)	146, 476
BstDEI	CTNAG	2 cut(s)	228, 515
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	5 cut(s)	90, 203, 338, 361, 451
BstMBI	GATC	5 cut(s)	87, 200, 335, 358, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	25, 261
BstX2I	RGATCY	2 cut(s)	200, 335
BstYI	RGATCY	2 cut(s)	200, 335
BsuI	GTATCC	2 cut(s)	134, 412
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	413
CciI	TCATGA	2 cut(s)	355, 445
Cfr13I	GGNCC	1 cut(s)	546
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	3 cut(s)	356, 390, 446
CviJI	RGCY	5 cut(s)	98, 232, 274, 521, 548
CviKI_1	RGCY	5 cut(s)	98, 232, 274, 521, 548
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	2 cut(s)	228, 515
DpnI	GATC	5 cut(s)	89, 202, 337, 360, 450
DpnII	GATC	5 cut(s)	87, 200, 335, 358, 448
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	522, 542
Eco24I	GRGCYC	1 cut(s)	234
Eco53kI	GAGCTC	1 cut(s)	232
EcoICRI	GAGCTC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	218
EcoT14I	CCWWGG	2 cut(s)	522, 542
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	2 cut(s)	522, 542
FaeI	CATG	3 cut(s)	359, 393, 449
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FatI	CATG	3 cut(s)	355, 389, 445
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	39, 275
FokI	GGATG	1 cut(s)	525
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	39, 275
FspBI	CTAG	3 cut(s)	278, 288, 565
GluI	GCNGC	2 cut(s)	39, 275
HaeIII	GGCC	1 cut(s)	548
Hin1II	CATG	3 cut(s)	359, 393, 449
HinfI	GANTC	1 cut(s)	513
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	4 cut(s)	16, 154, 299, 472
Hpy188I	TCNGA	2 cut(s)	330, 518
Hpy188III	TCNNGA	2 cut(s)	356, 446
Hpy8I	GTNNAC	4 cut(s)	16, 154, 299, 472
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	2 cut(s)	146, 476
HpyCH4V	TGCA	5 cut(s)	41, 185, 246, 398, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	228, 515
Hsp92II	CATG	3 cut(s)	359, 393, 449
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	5 cut(s)	87, 200, 335, 358, 448
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	3 cut(s)	78, 220, 401
Lsp1109I	GCAGC	2 cut(s)	25, 261
MaeI	CTAG	3 cut(s)	278, 288, 565
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	5 cut(s)	89, 202, 337, 360, 450
MboI	GATC	5 cut(s)	87, 200, 335, 358, 448
MboII	GAAGA	3 cut(s)	23, 344, 469
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	2 cut(s)	200, 335
MhlI	GDGCHC	2 cut(s)	234, 406
MluCI	AATT	3 cut(s)	8, 186, 218
MlyI	GAGTC	1 cut(s)	507
MnlI	CCTC	8 cut(s)	15, 76, 88, 127, 287, 393, 422, 559
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	261, 354
MunI	CAATTG	1 cut(s)	8
MwoI	GCNNNNNNNGC	1 cut(s)	410
NdeII	GATC	5 cut(s)	87, 200, 335, 358, 448
NlaIII	CATG	3 cut(s)	359, 393, 449
PagI	TCATGA	2 cut(s)	355, 445
PdmI	GAANNNNTTC	1 cut(s)	441
PkrI	GCNGC	2 cut(s)	40, 276
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	546
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	200, 335
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	2 cut(s)	261, 354
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	39, 275
Sau3AI	GATC	5 cut(s)	87, 200, 335, 358, 448
Sau96I	GGNCC	1 cut(s)	546
SchI	GAGTC	1 cut(s)	507
SduI	GDGCHC	2 cut(s)	234, 406
SetI	ASST	8 cut(s)	67, 234, 240, 276, 298, 376, 385, 528
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	261, 354
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	8, 186, 218
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	3 cut(s)	278, 288, 565
SstI	GAGCTC	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	522, 542
TaaI	ACNGT	2 cut(s)	146, 476
TasI	AATT	3 cut(s)	8, 186, 218
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	2 cut(s)	38, 274
TspDTI	ATGAA	4 cut(s)	344, 378, 434, 522
TspRI	CASTG	1 cut(s)	420
XapI	RAATTY	1 cut(s)	218
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	3 cut(s)	278, 288, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.