RLG00000004315

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
58245942 .. 58248540
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004315

Sequence Viewer

Length: 1806 bp
ATGGCTTCCCTGAACTTTCTCTTCATTGTCTTCACCATTTTGTACGCTTCCGTCCTCTCTGCCAGTGATAGTGTTGGCGCAGAGCCAACTCACATATACCCTTTTACTTGCTCTGCTTCTCATCACATCCGGAGCTGCAATTCCAAGCTGTATCACATTTCTACAGGCCATCAAATTGAAGAAATAGCCTCTTTTTACAAGGTGAATGTATCCGAGCTTGAGCCCATAAACCGTGATCAAAGTCAAAAGGACTATCTTGTATCTGTGCCTTGCAGTTGTAAGGACATTGATGGCACACAAATGTACGTGTATGATACCAATTATCCAGTTCAATCAGGGGACACATTTGAGAGAGTTGCAGTCGAGTTTTACAGTAGCCAAGCCTTGAGGGGGGAAGGCAATTTGAGCACCATACACCTTGTTTGTGGCTGCGTGAAGAAAAAGTCGCAGGAGGTTGTGACATACACAGTTCAAGAGCATGACACTTTATCAGGAATTGGACATCTTCTAGATGCATACGAGTCTGAAATTGAGACATACAATAGAAACTTTACTAAAGATCCGAGTTTTCTAGATGTAGGTTGGGTGTTGTATGTGCCGAAGAATGGACTTCGAGCTAACAAGAAAGGAAAAAGACTCAAGGTGTCTATAGTCATAGGTGTATCGTCCGCTGTTTGTTTTGTTTTGGTGGCCGCCTTCATTGTGTTCCTTCTCATGAGAAATAGGATCTGTAGGAACCTAGGGGATGATGTGCACCTTGTAAACTCAAGTGCGAAGAAACGTTCCTCGCTGAAGCAACAGTTTTTTAAAAAGGAAATGGAAGAAACTATTGAGAATGATAGACCTGTTATATATACTATGGAGGAGATCAAAGAGGCTACAAATAACTTTGACGATACCAGAAAGATTGGGGAGGGTGGATACGGTTGTGTTTACTTGGCCATAATAGGAGAAGTAGAAGTTGCAATTAAGAATATGAGATCTACCAGAACAAAAGAATTCTTTGCTGAGCTCAAGGTGTTATGCAAGATACATCATAACAATGTGGTGGAGCTGCTAGGATATGCTAGTGGAAGTGAACATCTTTGTTTGGTATATGAGTTTGTTCAGAATGGATCTCTCAACGACCATCTTCATGATCCATTGTTGAAAGGTCGCCAACCTCTTTCATGGACTGCAAGAGCACAAATAGCACTGGATACTGCAAGAGGGATTGAATACATTCATGATCACACTAAGAAACGCTATGTCCACCGTGATATAAAAACGAGTAATATTCTACTTGATGAAGGACTCAGAGCCAAGGTAGCAGATTTTGGGCTAGCAAGGTTAGTGGAGCGGTCTAATGAAGAAGATATCGTTGCAACTCGTGTAGTTGGAACACCCGGTTACATTCCTCCTGAATCGGTGCGGGAGCTACAAATGACATCAAAAGGTGATGTATATGCATTCGGAGTGGTTTTAGGAGAGCTAATAACTGGTCAGCGTGCCATTGTTCGTGACAACCGAGAGCCAAAAAGGATGAAATCACTTGTCTCAGTTTTACTAGAAGTATTCCAAGATAATGATCCAGAGATTGCTTTGGAAGCTAAAATAGATGGTAATTTGAAAGGAAGCTACCCCATGGAAGAAGTCTACAAGATGGGAGAAATAGCAAGATGGTGTTCGAGTGAAGATCCAGTAAATCGGCCAGAGATGCATGAGATTGTACAATCACTCTCCCAAATTTTGATGTCCTCAATAGAATGGGAAGCATCCCTCGGAGGGAAGAGTGAGGTCTTCAGTGGATTATTCAGTGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

602

Amino Acids

67.56

Weight (kDa)

5.96

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 298 - 572 1.8e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 300 - 573 2.7e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1339
AccI GTMKAC 1 cut(s) 1635
AccIII TCCGGA 1 cut(s) 129
AciI CCGC 4 cut(s) 669, 693, 1339, 1411
AclI AACGTT 1 cut(s) 781
AclWI GGATC 6 cut(s) 554, 734, 1123, 1133, 1562, 1670
AcoI YGGCCR 3 cut(s) 690, 939, 1688
AcsI RAATTY 2 cut(s) 998, 1725
AcuI CTGAAG 2 cut(s) 812, 1765
AfaI GTAC 3 cut(s) 44, 305, 1710
AfiI CCNNNNNNNGG 3 cut(s) 390, 605, 1764
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 6 cut(s) 179, 332, 473, 1150, 1217, 1609
Alw21I GWGCWC 4 cut(s) 410, 756, 1014, 1186
Alw26I GTCTC 2 cut(s) 527, 1540
Alw44I GTGCAC 1 cut(s) 752
AlwI GGATC 6 cut(s) 554, 734, 1123, 1133, 1562, 1670
Aor13HI TCCGGA 1 cut(s) 129
AoxI GGCC 4 cut(s) 166, 690, 939, 1688
ApaLI GTGCAC 1 cut(s) 752
ApeKI GCWGC 3 cut(s) 135, 429, 1054
ApoI RAATTY 2 cut(s) 998, 1725
Asp700I GAANNNNTTC 1 cut(s) 1221
AspA2I CCTAGG 1 cut(s) 739
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 1386
AsuHPI GGTGA 3 cut(s) 25, 214, 1448
AsuNHI GCTAGC 1 cut(s) 1321
AvrII CCTAGG 1 cut(s) 739
BaeGI GKGCMC 1 cut(s) 756
BaeI ACNNNNGTAYC 2 cut(s) 913, 946
BalI TGGCCA 1 cut(s) 941
BanII GRGCYC 2 cut(s) 225, 1014
BauI CACGAG 1 cut(s) 1368
BbsI GAAGAC 2 cut(s) 22, 1771
Bbv12I GWGCWC 4 cut(s) 410, 756, 1014, 1186
BbvI GCAGC 3 cut(s) 122, 416, 1041
BccI CCATC 6 cut(s) 177, 284, 1137, 1592, 1636, 1653
BciVI GTATCC 3 cut(s) 220, 914, 1192
BclI TGATCA 2 cut(s) 235, 1228
BcnI CCSGG 1 cut(s) 1386
BcoDI GTCTC 2 cut(s) 527, 1540
BfaI CTAG 7 cut(s) 509, 572, 740, 1058, 1068, 1322, 1547
BfmI CTRYAG 3 cut(s) 162, 648, 730
BfuI GTATCC 3 cut(s) 220, 914, 1192
BglII AGATCT 1 cut(s) 980
BisI GCNGC 4 cut(s) 136, 430, 693, 1055
BlnI CCTAGG 1 cut(s) 739
BlpI GCTNAGC 1 cut(s) 1008
BlsI GCNGC 4 cut(s) 137, 431, 694, 1056
Bme1390I CCNGG 1 cut(s) 1386
BmiI GGNNCC 1 cut(s) 737
BmrFI CCNGG 1 cut(s) 1386
BmsI GCATC 3 cut(s) 502, 1686, 1763
BmtI GCTAGC 1 cut(s) 1325
BpiI GAAGAC 2 cut(s) 22, 1771
Bpu1102I GCTNAGC 1 cut(s) 1008
BpuEI CTTGAG 5 cut(s) 239, 406, 623, 751, 998
BpuMI CCSGG 1 cut(s) 1386
BsaAI YACGTR 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 1566
BsaJI CCNNGG 4 cut(s) 739, 1302, 1623, 1759
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 605, 1764
Bse1I ACTGG 5 cut(s) 63, 326, 1200, 1483, 1679
Bse8I GATNNNNATC 1 cut(s) 1566
BseAI TCCGGA 1 cut(s) 129
BseDI CCNNGG 4 cut(s) 739, 1302, 1623, 1759
BseGI GGATG 4 cut(s) 126, 751, 1527, 1754
BseJI GATNNNNATC 1 cut(s) 1566
BseLI CCNNNNNNNGG 3 cut(s) 390, 605, 1764
BseMII CTCAG 3 cut(s) 999, 1309, 1551
BseNI ACTGG 5 cut(s) 63, 326, 1200, 1483, 1679
BseRI GAGGAG 1 cut(s) 878
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 3 cut(s) 122, 416, 1041
BshFI GGCC 4 cut(s) 168, 692, 941, 1690
BsiHKAI GWGCWC 4 cut(s) 410, 756, 1014, 1186
BsiSI CCGG 2 cut(s) 130, 1386
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 3 cut(s) 390, 605, 1764
BsmAI GTCTC 2 cut(s) 527, 1540
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 1 cut(s) 1448
BsnI GGCC 4 cut(s) 168, 692, 941, 1690
Bsp1286I GDGCHC 5 cut(s) 225, 410, 756, 1014, 1186
Bsp13I TCCGGA 1 cut(s) 129
Bsp1407I TGTACA 1 cut(s) 1708
Bsp1720I GCTNAGC 1 cut(s) 1008
Bsp19I CCATGG 1 cut(s) 1623
BspACI CCGC 4 cut(s) 669, 693, 1339, 1411
BspANI GGCC 4 cut(s) 168, 692, 941, 1690
BspCNI CTCAG 3 cut(s) 1000, 1308, 1550
BspEI TCCGGA 1 cut(s) 129
BspHI TCATGA 3 cut(s) 714, 1135, 1225
BspLI GGNNCC 1 cut(s) 737
BspOI GCTAGC 1 cut(s) 1325
BspPI GGATC 6 cut(s) 554, 734, 1123, 1133, 1562, 1670
BsrBI CCGCTC 1 cut(s) 1339
BsrGI TGTACA 1 cut(s) 1708
BsrI ACTGG 5 cut(s) 63, 326, 1200, 1483, 1679
BssECI CCNNGG 4 cut(s) 739, 1302, 1623, 1759
BssSI CACGAG 1 cut(s) 1368
BssT1I CCWWGG 3 cut(s) 739, 1302, 1623
Bst2BI CACGAG 1 cut(s) 1368
Bst4CI ACNGT 6 cut(s) 233, 374, 469, 801, 926, 1256
Bst6I CTCTTC 2 cut(s) 26, 1763
BstAUI TGTACA 1 cut(s) 1708
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 1323, 1488
BstDEI CTNAG 4 cut(s) 1008, 1236, 1295, 1537
BstDSI CCRYGG 1 cut(s) 1623
BstF5I GGATG 4 cut(s) 126, 751, 1527, 1754
BstHHI GCGC 1 cut(s) 80
BstMAI GTCTC 2 cut(s) 527, 1540
BstMWI GCNNNNNNNGC 5 cut(s) 405, 1190, 1307, 1586, 1696
BstSCI CCNGG 1 cut(s) 1384
BstSFI CTRYAG 3 cut(s) 162, 648, 730
BstSLI GKGCMC 1 cut(s) 756
BstV1I GCAGC 3 cut(s) 122, 416, 1041
BstV2I GAAGAC 2 cut(s) 22, 1771
BstX2I RGATCY 5 cut(s) 559, 726, 980, 1115, 1675
BstYI RGATCY 5 cut(s) 559, 726, 980, 1115, 1675
BsuI GTATCC 3 cut(s) 220, 914, 1192
BsuRI GGCC 4 cut(s) 168, 692, 941, 1690
BtgI CCRYGG 1 cut(s) 1623
BtsCI GGATG 4 cut(s) 126, 751, 1527, 1754
BtsIMutI CAGTG 4 cut(s) 70, 1193, 1789, 1801
Cac8I GCNNGC 2 cut(s) 1323, 1488
CciI TCATGA 3 cut(s) 714, 1135, 1225
CfoI GCGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 43, 304, 1709
CspCI CAANNNNNGTGG 2 cut(s) 1314, 1349
CviAII CATG 7 cut(s) 479, 715, 1136, 1170, 1226, 1624, 1700
CviQI GTAC 3 cut(s) 43, 304, 1709
DdeI CTNAG 4 cut(s) 1008, 1236, 1295, 1537
DraI TTTAAA 1 cut(s) 808
EaeI YGGCCR 3 cut(s) 690, 939, 1688
Eam1104I CTCTTC 2 cut(s) 26, 1763
EarI CTCTTC 2 cut(s) 26, 1763
Ecl136II GAGCTC 1 cut(s) 1012
Eco130I CCWWGG 3 cut(s) 739, 1302, 1623
Eco24I GRGCYC 2 cut(s) 225, 1014
Eco32I GATATC 1 cut(s) 1357
Eco53kI GAGCTC 1 cut(s) 1012
Eco57I CTGAAG 2 cut(s) 812, 1765
EcoICRI GAGCTC 1 cut(s) 1012
EcoRI GAATTC 1 cut(s) 998
EcoRV GATATC 1 cut(s) 1357
EcoT14I CCWWGG 3 cut(s) 739, 1302, 1623
EcoT22I ATGCAT 3 cut(s) 517, 1450, 1701
EcoT38I GRGCYC 2 cut(s) 225, 1014
ErhI CCWWGG 3 cut(s) 739, 1302, 1623
FaeI CATG 7 cut(s) 482, 718, 1139, 1173, 1229, 1627, 1703
FaqI GGGAC 1 cut(s) 353
FatI CATG 7 cut(s) 478, 714, 1135, 1169, 1225, 1623, 1699
FauI CCCGC 1 cut(s) 1404
FbaI TGATCA 2 cut(s) 235, 1228
FblI GTMKAC 1 cut(s) 1635
Fnu4HI GCNGC 4 cut(s) 136, 430, 693, 1055
FokI GGATG 4 cut(s) 113, 758, 1534, 1741
FriOI GRGCYC 2 cut(s) 225, 1014
Fsp4HI GCNGC 4 cut(s) 136, 430, 693, 1055
FspBI CTAG 7 cut(s) 509, 572, 740, 1058, 1068, 1322, 1547
GlaI GCGC 1 cut(s) 79
GluI GCNGC 4 cut(s) 136, 430, 693, 1055
HaeIII GGCC 4 cut(s) 168, 692, 941, 1690
HapII CCGG 2 cut(s) 130, 1386
HhaI GCGC 1 cut(s) 80
Hin1II CATG 7 cut(s) 482, 718, 1139, 1173, 1229, 1627, 1703
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 4 cut(s) 521, 636, 1293, 1403
HpaII CCGG 2 cut(s) 130, 1386
HphI GGTGA 3 cut(s) 25, 214, 1448
Hpy166II GTNNAC 6 cut(s) 754, 763, 934, 1079, 1252, 1636
Hpy188I TCNGA 7 cut(s) 214, 526, 564, 1110, 1298, 1454, 1763
Hpy8I GTNNAC 6 cut(s) 754, 763, 934, 1079, 1252, 1636
HpyAV CCTTC 4 cut(s) 389, 706, 719, 1283
HpyCH4III ACNGT 6 cut(s) 233, 374, 469, 801, 926, 1256
HpyCH4IV ACGT 2 cut(s) 306, 781
HpyF10VI GCNNNNNNNGC 5 cut(s) 405, 1190, 1307, 1586, 1696
HpyF3I CTNAG 4 cut(s) 1008, 1236, 1295, 1537
HpySE526I ACGT 2 cut(s) 306, 781
Hsp92II CATG 7 cut(s) 482, 718, 1139, 1173, 1229, 1627, 1703
HspAI GCGC 1 cut(s) 78
Kpn2I TCCGGA 1 cut(s) 129
Ksp22I TGATCA 2 cut(s) 235, 1228
LmnI GCTCC 4 cut(s) 132, 1051, 1336, 1414
Lsp1109I GCAGC 3 cut(s) 122, 416, 1041
LweI GCATC 3 cut(s) 502, 1686, 1763
MaeI CTAG 7 cut(s) 509, 572, 740, 1058, 1068, 1322, 1547
MaeII ACGT 2 cut(s) 306, 781
MaeIII GTNAC 3 cut(s) 457, 1388, 1499
MbiI CCGCTC 1 cut(s) 1339
MflI RGATCY 5 cut(s) 559, 726, 980, 1115, 1675
MhlI GDGCHC 5 cut(s) 225, 410, 756, 1014, 1186
MlsI TGGCCA 1 cut(s) 941
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 3 cut(s) 530, 630, 1287
MmeI TCCRAC 1 cut(s) 1357
Mox20I TGGCCA 1 cut(s) 941
Mph1103I ATGCAT 3 cut(s) 517, 1450, 1701
MroI TCCGGA 1 cut(s) 129
MroXI GAANNNNTTC 1 cut(s) 1221
MscI TGGCCA 1 cut(s) 941
MseI TTAA 2 cut(s) 807, 969
MslI CAYNNNNRTG 3 cut(s) 299, 1041, 1134
Msp20I TGGCCA 1 cut(s) 941
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 2 cut(s) 130, 1386
MspR9I CCNGG 1 cut(s) 1386
Mva1269I GAATGC 1 cut(s) 1448
MwoI GCNNNNNNNGC 5 cut(s) 405, 1190, 1307, 1586, 1696
NciI CCSGG 1 cut(s) 1386
NcoI CCATGG 1 cut(s) 1623
NheI GCTAGC 1 cut(s) 1321
NlaIII CATG 7 cut(s) 482, 718, 1139, 1173, 1229, 1627, 1703
NlaIV GGNNCC 1 cut(s) 737
NmuCI GTSAC 2 cut(s) 457, 1499
NsiI ATGCAT 3 cut(s) 517, 1450, 1701
PagI TCATGA 3 cut(s) 714, 1135, 1225
PcsI WCGNNNNNNNCGW 1 cut(s) 1504
PctI GAATGC 1 cut(s) 1448
PdmI GAANNNNTTC 1 cut(s) 1221
PfeI GAWTC 1 cut(s) 1403
PkrI GCNGC 4 cut(s) 137, 431, 694, 1056
PleI GAGTC 3 cut(s) 529, 630, 1287
PpsI GAGTC 3 cut(s) 529, 630, 1287
Ppu21I YACGTR 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 1014
Psp1406I AACGTT 1 cut(s) 781
PspN4I GGNNCC 1 cut(s) 737
PsuI RGATCY 5 cut(s) 559, 726, 980, 1115, 1675
RsaI GTAC 3 cut(s) 44, 305, 1710
RsaNI GTAC 3 cut(s) 43, 304, 1709
RseI CAYNNNNRTG 3 cut(s) 299, 1041, 1134
SacI GAGCTC 1 cut(s) 1014
SaqAI TTAA 2 cut(s) 807, 969
SatI GCNGC 4 cut(s) 136, 430, 693, 1055
SchI GAGTC 3 cut(s) 530, 630, 1287
ScrFI CCNGG 1 cut(s) 1386
SduI GDGCHC 5 cut(s) 225, 410, 756, 1014, 1186
SfaNI GCATC 3 cut(s) 502, 1686, 1763
SfcI CTRYAG 3 cut(s) 162, 648, 730
SmiMI CAYNNNNRTG 3 cut(s) 299, 1041, 1134
SmlI CTYRAG 5 cut(s) 218, 385, 638, 766, 1013
SmoI CTYRAG 5 cut(s) 218, 385, 638, 766, 1013
SsiI CCGC 4 cut(s) 669, 693, 1339, 1411
SspI AATATT 1 cut(s) 1276
SspMI CTAG 7 cut(s) 509, 572, 740, 1058, 1068, 1322, 1547
SstI GAGCTC 1 cut(s) 1014
StyD4I CCNGG 1 cut(s) 1384
StyI CCWWGG 3 cut(s) 739, 1302, 1623
TaaI ACNGT 6 cut(s) 233, 374, 469, 801, 926, 1256
TaiI ACGT 2 cut(s) 309, 784
TaqI TCGA 3 cut(s) 363, 613, 1667
TatI WGTACW 1 cut(s) 1708
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 1 cut(s) 1403
Tru1I TTAA 2 cut(s) 807, 969
Tru9I TTAA 2 cut(s) 807, 969
TscAI CASTG 4 cut(s) 70, 1200, 1789, 1801
TseFI GTSAC 2 cut(s) 457, 1499
TseI GCWGC 3 cut(s) 135, 429, 1054
Tsp45I GTSAC 2 cut(s) 457, 1499
TspDTI ATGAA 8 cut(s) 13, 688, 1124, 1158, 1214, 1302, 1362, 1538
TspGWI ACGGA 1 cut(s) 40
TspRI CASTG 4 cut(s) 70, 1200, 1789, 1801
VneI GTGCAC 1 cut(s) 752
XapI RAATTY 2 cut(s) 998, 1725
XbaI TCTAGA 2 cut(s) 508, 571
XmaJI CCTAGG 1 cut(s) 739
XmiI GTMKAC 1 cut(s) 1635
XmnI GAANNNNTTC 1 cut(s) 1221
XspI CTAG 7 cut(s) 509, 572, 740, 1058, 1068, 1322, 1547
Zsp2I ATGCAT 3 cut(s) 517, 1450, 1701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.