Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000354.1

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Reverse (-)

32341 .. 35855

Gene Structure 3515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000354.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

atggcatcagttgatctccgtcattgtctgatcctcaccgtatttctggccttttcctttgctgtatctgtccaaacttctgacatagtccctttccaatgctctgctgcaacaatcgcgaggtgtaaagcctcactataccacatcaacagcggttttcagaaagaagaaatcgcctctttttactctgtcaatccatctcaagtcaatcctataaagtatcacaataaagacgatcatctcataagtgtaccttgttcttgcaaaagcatattcaacactactggatatttctatgatacaatctacaaagtgaaaccgtcagacacatttgatgatgtttcaaataatatctacagtgggcaagttttatctgtcatagaagaacgaaagaacaactttacaataggagctgattttcccattcatcttccttgtgggtgtgtagatagtgattctcagattgtggtaacatacacagttcaggacaaagatacactgtcagatattgccactctgctgtctgccaagatagaaaacatagaaagcatgaacaagaatcaggttgagaacccgtcatacatacaacccggttgggtgttgtttgtgccctcggaaaagaatggacttaaaaagccagatgcaacagtttttgaatcagacggaccagtggtattttctctcgaggagatagaagaggctaccggttattttgatgaaagtaagatcattggagagggtggatatggtaaagtatacttcggagtactaggggaaaaggaggtcgccataaagaagatgagatctaacatgtgcaaagaattctttgcagagctaaaggtcttatgcaaggtccatcacattaatgtggttgagcttttagggtacgccagtggccatgaccacctctacctggtctatgagtatattcagaatggatcattgagcgaacatcttcatgatccattgcttaaaggtcatcagcctctctcctggactgcaagaacacaaattgcactggatactgcaaaaggtattgaatacattcatgaccacacaaaagctcgatatgtgcaccgtgatataaagacaagtaacattctacttgatgagggtctcagagcaaaggagctccaggtgactcacaagactgatgtatttgcatttggagtggtacttggagaactgattacagggcaacttgcactgttccgtgacaaccgggagcctgcaaagatgaaatctttgattacagtaataaaaaaggtgttccaagatggtgaaccagaattagctttggaggctgtcacagaccctaatctccagggcaactatcctatagaagagatattcaagatggcagaaatatcagagtggtgtttgagtgaagaagcagtgggaaggccagagatgagagagattgttgtgctgctctcacaaatagtgacaacctctactgaatgggaagcatcacttggcggtaacagtcaagtttttagtggcttgtttagtggaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

506

Amino Acids

56.53

Weight (kDa)

5.23

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	1 cut(s)	119
AciI	CCGC	2 cut(s)	153, 1479
AclWI	GGATC	3 cut(s)	25, 946, 956
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	821
AfaI	GTAC	4 cut(s)	252, 768, 887, 1176
AfiI	CCNNNNNNNGG	1 cut(s)	913
AflIII	ACRYGT	1 cut(s)	810
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	5 cut(s)	277, 345, 656, 1040, 1354
AjnI	CCWGG	4 cut(s)	912, 992, 1134, 1323
AjuI	GAANNNNNNNTTGG	2 cut(s)	1458, 1490
AluBI	AGCT	6 cut(s)	413, 835, 877, 1064, 1132, 1295
AluI	AGCT	6 cut(s)	413, 835, 877, 1064, 1132, 1295
Alw21I	GWGCWC	2 cut(s)	1077, 1134
Alw26I	GTCTC	1 cut(s)	1121
Alw44I	GTGCAC	1 cut(s)	1073
AlwI	GGATC	3 cut(s)	25, 946, 956
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	3 cut(s)	48, 895, 1403
ApaLI	GTGCAC	1 cut(s)	1073
ApeKI	GCWGC	2 cut(s)	107, 1429
ApoI	RAATTY	1 cut(s)	821
AseI	ATTAAT	1 cut(s)	864
AsiGI	ACCGGT	1 cut(s)	704
Asp700I	GAANNNNTTC	2 cut(s)	954, 1044
AspS9I	GGNCC	2 cut(s)	665, 853
AsuC2I	CCSGG	2 cut(s)	591, 1223
AsuHPI	GGTGA	3 cut(s)	28, 1150, 1292
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	665, 853
BaeGI	GKGCMC	2 cut(s)	612, 1077
BaeI	ACNNNNGTAYC	2 cut(s)	877, 910
BalI	TGGCCA	1 cut(s)	897
BanII	GRGCYC	1 cut(s)	1134
Bbv12I	GWGCWC	2 cut(s)	1077, 1134
BbvI	GCAGC	2 cut(s)	94, 1416
BccI	CCATC	4 cut(s)	205, 864, 1271, 1351
BciT130I	CCWGG	4 cut(s)	914, 994, 1136, 1325
BciVI	GTATCC	1 cut(s)	1015
BcnI	CCSGG	2 cut(s)	591, 1223
BcoDI	GTCTC	1 cut(s)	1121
BfaI	CTAG	1 cut(s)	770
BfmI	CTRYAG	2 cut(s)	355, 1338
BfuI	GTATCC	1 cut(s)	1015
BglII	AGATCT	1 cut(s)	803
BisI	GCNGC	2 cut(s)	108, 1430
BlsI	GCNGC	2 cut(s)	109, 1431
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	6 cut(s)	591, 914, 994, 1136, 1223, 1325
Bme18I	GGWCC	2 cut(s)	665, 853
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	2 cut(s)	665, 853
BmiI	GGNNCC	1 cut(s)	1227
BmrFI	CCNGG	6 cut(s)	591, 914, 994, 1136, 1223, 1325
BmsI	GCATC	3 cut(s)	14, 631, 1478
BpmI	CTGGAG	2 cut(s)	1118, 1307
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	2 cut(s)	591, 1223
BsaI	GGTCTC	1 cut(s)	1121
BsaJI	CCNNGG	2 cut(s)	612, 1324
BsaWI	WCCGGW	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	1 cut(s)	913
Bse118I	RCCGGY	1 cut(s)	704
Bse1I	ACTGG	4 cut(s)	289, 668, 891, 1023
Bse3DI	GCAATG	1 cut(s)	965
BseBI	CCWGG	4 cut(s)	914, 994, 1136, 1325
BseDI	CCNNGG	2 cut(s)	612, 1324
BseLI	CCNNNNNNNGG	1 cut(s)	913
BseMI	GCAATG	1 cut(s)	965
BseMII	CTCAG	2 cut(s)	473, 1132
BseNI	ACTGG	4 cut(s)	289, 668, 891, 1023
BseRI	GAGGAG	1 cut(s)	701
BseSI	GKGCMC	2 cut(s)	612, 1077
BseXI	GCAGC	2 cut(s)	94, 1416
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	50, 897, 1405
BshTI	ACCGGT	1 cut(s)	704
BsiHKAI	GWGCWC	2 cut(s)	1077, 1134
BsiHKCI	CYCGRG	1 cut(s)	683
BsiSI	CCGG	3 cut(s)	591, 705, 1222
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	913
BsmAI	GTCTC	1 cut(s)	1121
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	3 cut(s)	50, 897, 1405
Bso31I	GGTCTC	1 cut(s)	1121
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	3 cut(s)	612, 1077, 1134
Bsp143I	GATC	7 cut(s)	13, 30, 235, 726, 803, 938, 961
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	2 cut(s)	153, 1479
BspANI	GGCC	3 cut(s)	50, 897, 1405
BspCNI	CTCAG	2 cut(s)	472, 1131
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	2 cut(s)	958, 1048
BspLI	GGNNCC	1 cut(s)	1227
BspPI	GGATC	3 cut(s)	25, 946, 956
BspTNI	GGTCTC	1 cut(s)	1121
BsrDI	GCAATG	1 cut(s)	965
BsrFI	RCCGGY	1 cut(s)	704
BsrI	ACTGG	4 cut(s)	289, 668, 891, 1023
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	2 cut(s)	612, 1324
BssMI	GATC	7 cut(s)	13, 30, 235, 726, 803, 938, 961
BssNAI	GTATAC	1 cut(s)	757
Bst1107I	GTATAC	1 cut(s)	757
Bst2UI	CCWGG	4 cut(s)	914, 994, 1136, 1325
Bst6I	CTCTTC	2 cut(s)	690, 1338
BstC8I	GCNNGC	1 cut(s)	1230
BstDEI	CTNAG	2 cut(s)	459, 1118
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	7 cut(s)	16, 33, 238, 729, 806, 941, 964
BstMAI	GTCTC	1 cut(s)	1121
BstMBI	GATC	7 cut(s)	13, 30, 235, 726, 803, 938, 961
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 1301
BstNI	CCWGG	4 cut(s)	914, 994, 1136, 1325
BstNSI	RCATGY	1 cut(s)	814
BstSCI	CCNGG	6 cut(s)	589, 912, 992, 1134, 1221, 1323
BstSFI	CTRYAG	2 cut(s)	355, 1338
BstSLI	GKGCMC	2 cut(s)	612, 1077
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	94, 1416
BstX2I	RGATCY	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	803
BstZ17I	GTATAC	1 cut(s)	757
BsuI	GTATCC	1 cut(s)	1015
BsuRI	GGCC	3 cut(s)	50, 897, 1405
BtsI	GCAGTG	1 cut(s)	1401
BtsIMutI	CAGTG	7 cut(s)	364, 497, 675, 898, 1016, 1205, 1401
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	1230
CciI	TCATGA	2 cut(s)	958, 1048
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	2 cut(s)	665, 853
CsiI	ACCWGGT	1 cut(s)	912
Csp6I	GTAC	4 cut(s)	251, 767, 886, 1175
CspAI	ACCGGT	1 cut(s)	704
CviAII	CATG	5 cut(s)	550, 811, 899, 959, 1049
CviQI	GTAC	4 cut(s)	251, 767, 886, 1175
DdeI	CTNAG	2 cut(s)	459, 1118
DpnI	GATC	7 cut(s)	15, 32, 237, 728, 805, 940, 963
DpnII	GATC	7 cut(s)	13, 30, 235, 726, 803, 938, 961
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	2 cut(s)	690, 1338
EarI	CTCTTC	2 cut(s)	690, 1338
Ecl136II	GAGCTC	1 cut(s)	1132
Eco24I	GRGCYC	1 cut(s)	1134
Eco31I	GGTCTC	1 cut(s)	1121
Eco47I	GGWCC	2 cut(s)	665, 853
Eco53kI	GAGCTC	1 cut(s)	1132
Eco88I	CYCGRG	1 cut(s)	683
EcoICRI	GAGCTC	1 cut(s)	1132
EcoRI	GAATTC	1 cut(s)	821
EcoRII	CCWGG	4 cut(s)	912, 992, 1134, 1323
EcoT38I	GRGCYC	1 cut(s)	1134
FaeI	CATG	5 cut(s)	553, 814, 902, 962, 1052
FalI	AAGNNNNNCTT	6 cut(s)	238, 270, 383, 415, 1458, 1490
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	5 cut(s)	549, 810, 898, 958, 1048
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	2 cut(s)	108, 1430
FriOI	GRGCYC	1 cut(s)	1134
Fsp4HI	GCNGC	2 cut(s)	108, 1430
FspBI	CTAG	1 cut(s)	770
GluI	GCNGC	2 cut(s)	108, 1430
GsuI	CTGGAG	2 cut(s)	1118, 1307
HaeIII	GGCC	3 cut(s)	50, 897, 1405
HapII	CCGG	3 cut(s)	591, 705, 1222
Hin1II	CATG	5 cut(s)	553, 814, 902, 962, 1052
HinfI	GANTC	4 cut(s)	455, 559, 656, 1141
HpaII	CCGG	3 cut(s)	591, 705, 1222
HphI	GGTGA	3 cut(s)	28, 1150, 1292
Hpy166II	GTNNAC	4 cut(s)	251, 757, 1075, 1283
Hpy188III	TCNNGA	6 cut(s)	118, 485, 683, 959, 1049, 1354
Hpy8I	GTNNAC	4 cut(s)	251, 757, 1075, 1283
HpyAV	CCTTC	1 cut(s)	1395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 1301
HpyF3I	CTNAG	2 cut(s)	459, 1118
Hsp92II	CATG	5 cut(s)	553, 814, 902, 962, 1052
Kzo9I	GATC	7 cut(s)	13, 30, 235, 726, 803, 938, 961
LmnI	GCTCC	4 cut(s)	410, 1129, 1137, 1225
Lsp1109I	GCAGC	2 cut(s)	94, 1416
LweI	GCATC	3 cut(s)	14, 631, 1478
MabI	ACCWGGT	1 cut(s)	912
MaeI	CTAG	1 cut(s)	770
MaeIII	GTNAC	7 cut(s)	469, 1094, 1138, 1214, 1306, 1444, 1481
MalI	GATC	7 cut(s)	15, 32, 237, 728, 805, 940, 963
MboI	GATC	7 cut(s)	13, 30, 235, 726, 803, 938, 961
MboII	GAAGA	8 cut(s)	179, 395, 422, 707, 808, 947, 1355, 1400
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	3 cut(s)	612, 1077, 1134
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	3 cut(s)	821, 1011, 1289
MluNI	TGGCCA	1 cut(s)	897
MlyI	GAGTC	1 cut(s)	1135
Mox20I	TGGCCA	1 cut(s)	897
MroXI	GAANNNNTTC	2 cut(s)	954, 1044
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	3 cut(s)	630, 864, 972
MslI	CAYNNNNRTG	3 cut(s)	864, 866, 957
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	591, 705, 1222
MspR9I	CCNGG	6 cut(s)	591, 914, 994, 1136, 1223, 1325
MvaI	CCWGG	4 cut(s)	914, 994, 1136, 1325
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	116, 1301
NciI	CCSGG	2 cut(s)	591, 1223
NdeII	GATC	7 cut(s)	13, 30, 235, 726, 803, 938, 961
NlaIII	CATG	5 cut(s)	553, 814, 902, 962, 1052
NlaIV	GGNNCC	1 cut(s)	1227
NmuCI	GTSAC	4 cut(s)	1138, 1214, 1306, 1444
NruI	TCGCGA	1 cut(s)	119
NspI	RCATGY	1 cut(s)	814
PaeR7I	CTCGAG	1 cut(s)	683
PagI	TCATGA	2 cut(s)	958, 1048
PciI	ACATGT	1 cut(s)	810
PdmI	GAANNNNTTC	2 cut(s)	954, 1044
PfeI	GAWTC	3 cut(s)	455, 559, 656
PflFI	GACNNNGTC	1 cut(s)	86
PfoI	TCCNGGA	1 cut(s)	992
PinAI	ACCGGT	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	109, 1431
PleI	GAGTC	1 cut(s)	1135
PpsI	GAGTC	1 cut(s)	1135
PscI	ACATGT	1 cut(s)	810
PshBI	ATTAAT	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	1134
Psp6I	CCWGG	4 cut(s)	912, 992, 1134, 1323
PspGI	CCWGG	4 cut(s)	912, 992, 1134, 1323
PspN4I	GGNNCC	1 cut(s)	1227
PspPI	GGNCC	2 cut(s)	665, 853
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PsuI	RGATCY	1 cut(s)	803
PsyI	GACNNNGTC	1 cut(s)	86
RruI	TCGCGA	1 cut(s)	119
RsaI	GTAC	4 cut(s)	252, 768, 887, 1176
RsaNI	GTAC	4 cut(s)	251, 767, 886, 1175
RseI	CAYNNNNRTG	3 cut(s)	864, 866, 957
SacI	GAGCTC	1 cut(s)	1134
SaqAI	TTAA	3 cut(s)	630, 864, 972
SatI	GCNGC	2 cut(s)	108, 1430
Sau3AI	GATC	7 cut(s)	13, 30, 235, 726, 803, 938, 961
Sau96I	GGNCC	2 cut(s)	665, 853
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	1 cut(s)	1135
ScrFI	CCNGG	6 cut(s)	591, 914, 994, 1136, 1223, 1325
SduI	GDGCHC	3 cut(s)	612, 1077, 1134
SexAI	ACCWGGT	1 cut(s)	912
SfaNI	GCATC	3 cut(s)	14, 631, 1478
SfcI	CTRYAG	2 cut(s)	355, 1338
Sfr274I	CTCGAG	1 cut(s)	683
SinI	GGWCC	2 cut(s)	665, 853
SlaI	CTCGAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	3 cut(s)	864, 866, 957
SmlI	CTYRAG	2 cut(s)	201, 683
SmoI	CTYRAG	2 cut(s)	201, 683
Sse9I	AATT	3 cut(s)	821, 1011, 1289
SsiI	CCGC	2 cut(s)	153, 1479
SspMI	CTAG	1 cut(s)	770
SstI	GAGCTC	1 cut(s)	1134
StyD4I	CCNGG	6 cut(s)	589, 912, 992, 1134, 1221, 1323
TaqI	TCGA	2 cut(s)	684, 1066
TasI	AATT	3 cut(s)	821, 1011, 1289
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	3 cut(s)	455, 559, 656
Tru1I	TTAA	3 cut(s)	630, 864, 972
Tru9I	TTAA	3 cut(s)	630, 864, 972
TscAI	CASTG	7 cut(s)	364, 504, 675, 898, 1023, 1212, 1401
TseFI	GTSAC	4 cut(s)	1138, 1214, 1306, 1444
TseI	GCWGC	2 cut(s)	107, 1429
Tsp45I	GTSAC	4 cut(s)	1138, 1214, 1306, 1444
TspDTI	ATGAA	6 cut(s)	416, 566, 732, 947, 1037, 1253
TspGWI	ACGGA	3 cut(s)	8, 678, 1202
TspRI	CASTG	7 cut(s)	364, 504, 675, 898, 1023, 1212, 1401
Tth111I	GACNNNGTC	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	1073
VpaK11BI	GGWCC	2 cut(s)	665, 853
VspI	ATTAAT	1 cut(s)	864
XapI	RAATTY	1 cut(s)	821
XceI	RCATGY	1 cut(s)	814
XhoI	CTCGAG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	756
XmnI	GAANNNNTTC	2 cut(s)	954, 1044
XspI	CTAG	1 cut(s)	770
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.