Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Forward (+)

10950800 .. 10953408

Gene Structure 2609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG135200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGAAATGGCTTCCCTGAACTTTCTCTTCATTCTCTTCACCATTTTGTACGCTTCCGTCCTCTCTGCCAGTGATAGTGTTGGCGCAGAGCCAATTCACATATACCCTTTTACTTGCTCTGCTTCTCATCACATCCGGAGCTGCAATTCCAAGCTGTATCACATTTCTACAGGCCATCAAATTGAAGAAATAGCCTATTTTTACAAGGTGAATGTATCCCAGCTTGAGCCCATAAACCGTGATCAAAGTCAAAAGGACTATCTTGTATCTGTGCCTTGCAGTTGTAAGGACATTGATGGCACACAAATGTACGTGTATGATACCAATTATCCAGTTCAATCAGGAGACACATTTGAGAGAGTTGCAGGCGAGTTTTACAGTAGCCAAGCCTTGAGGGGGGAAGGCAATTTGAGCACCATACACCTTGTTTGTGGCTGCGTGAAGAAAAAGTCGCAGGAGGTTGTGACATACACAGTTCAAGAGCATGACACTTTATCAGGAATTGGACATCTTCTAGATGCATACGAGTCTGAAATTGAGACATACAATAGAAACTTTACTAAAGATCCGAGTTTTCTAGATGTAGGTTGGGTGTTGTATGTGCCGAAGAATGGACTTCGAGCTAACAAGAAAGGTCGCCAACCTCTTTCATGGACTGCAAGAGCACAGATAGCACTGGATACTGCAAGAGGGATTGAATACATTCATGATCACACGAAGAAACGCTATGTCCACCGTGATATAAAAACGAGTAATATTCTACTTGATGAAGGACTCAGAGCCAAGGTAGCAGATTTTGGGCTAGCAAGGTTAGTGGAACGGTCTAATGAAGAAGATATCGTTGCAACTCGTGTAGTTGGAACACCCGGTTACATTCCTCCTGAATCGGTGCGGGAGCTACAAATGACATCAAAAGGTGATGTATATGCATTCGGAGTGGTTATAGGAGAGCTAATAACTGGTCAGCGTGCCATTGTTCGTGACAACCGAGAGCCAAAAAGGATGAAATCACTTGTCTCAGTTTTACTAGAAGTATTCCAAGATAATGATCCAGAGATTGCTTTGGAAGCTAAAATAGATGGTAATTTGAAAGGAAGCTACCCCATGGAAGAAGTCTACAAGATGGGAGAAATAGCGAGATGGTGTTCGAGTGAAGATCCAGTAAATCGGCCAGAGATGCATGAGATTGTACAATCACTCTCCCAAGTTTTGATGTCGTCAATAGAATGGGAAGCATCCCTTGGAGGGAAGAGTGAGGTCTTCAGTGGATTATTCAGTGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

428

Amino Acids

48.08

Weight (kDa)

5.54

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	206 - 399	2.8e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	206 - 400	2.5e-26	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1116
AccIII	TCCGGA	1 cut(s)	135
AciI	CCGC	1 cut(s)	892
AclWI	GGATC	3 cut(s)	560, 1043, 1151
AcoI	YGGCCR	1 cut(s)	1169
AcuI	CTGAAG	1 cut(s)	1246
AfaI	GTAC	3 cut(s)	50, 311, 1191
AfiI	CCNNNNNNNGG	3 cut(s)	396, 611, 1245
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	5 cut(s)	185, 338, 479, 698, 1090
AjuI	GAANNNNNNNTTGG	2 cut(s)	1224, 1256
AluBI	AGCT	8 cut(s)	141, 154, 223, 623, 898, 952, 1070, 1098
AluI	AGCT	8 cut(s)	141, 154, 223, 623, 898, 952, 1070, 1098
Alw21I	GWGCWC	2 cut(s)	416, 667
Alw26I	GTCTC	3 cut(s)	339, 533, 1021
AlwI	GGATC	3 cut(s)	560, 1043, 1151
Aor13HI	TCCGGA	1 cut(s)	135
AoxI	GGCC	2 cut(s)	172, 1169
ApeKI	GCWGC	2 cut(s)	141, 435
Asp700I	GAANNNNTTC	1 cut(s)	702
AspLEI	GCGC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	867
AsuHPI	GGTGA	3 cut(s)	31, 220, 929
AsuNHI	GCTAGC	1 cut(s)	802
BanII	GRGCYC	1 cut(s)	231
BauI	CACGAG	1 cut(s)	849
BbsI	GAAGAC	1 cut(s)	1252
Bbv12I	GWGCWC	2 cut(s)	416, 667
BbvI	GCAGC	2 cut(s)	128, 422
BccI	CCATC	5 cut(s)	183, 290, 1073, 1117, 1134
BciVI	GTATCC	2 cut(s)	226, 673
BclI	TGATCA	2 cut(s)	241, 709
BcnI	CCSGG	1 cut(s)	867
BcoDI	GTCTC	3 cut(s)	339, 533, 1021
BfaI	CTAG	4 cut(s)	515, 578, 803, 1028
BfmI	CTRYAG	1 cut(s)	168
BfuI	GTATCC	2 cut(s)	226, 673
BisI	GCNGC	2 cut(s)	142, 436
BlsI	GCNGC	2 cut(s)	143, 437
Bme1390I	CCNGG	1 cut(s)	867
BmrFI	CCNGG	1 cut(s)	867
BmsI	GCATC	3 cut(s)	508, 1167, 1244
BmtI	GCTAGC	1 cut(s)	806
BpiI	GAAGAC	1 cut(s)	1252
BpuEI	CTTGAG	2 cut(s)	245, 412
BpuMI	CCSGG	1 cut(s)	867
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	1047
BsaJI	CCNNGG	3 cut(s)	783, 1104, 1240
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 611, 1245
Bse1I	ACTGG	5 cut(s)	69, 332, 681, 964, 1160
Bse8I	GATNNNNATC	1 cut(s)	1047
BseAI	TCCGGA	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	783, 1104, 1240
BseGI	GGATG	3 cut(s)	132, 1008, 1235
BseJI	GATNNNNATC	1 cut(s)	1047
BseLI	CCNNNNNNNGG	3 cut(s)	396, 611, 1245
BseMII	CTCAG	2 cut(s)	790, 1032
BseNI	ACTGG	5 cut(s)	69, 332, 681, 964, 1160
BseXI	GCAGC	2 cut(s)	128, 422
BseYI	CCCAGC	1 cut(s)	219
BshFI	GGCC	2 cut(s)	174, 1171
BsiHKAI	GWGCWC	2 cut(s)	416, 667
BsiSI	CCGG	2 cut(s)	136, 867
BslI	CCNNNNNNNGG	3 cut(s)	396, 611, 1245
BsmAI	GTCTC	3 cut(s)	339, 533, 1021
BsmI	GAATGC	1 cut(s)	929
BsnI	GGCC	2 cut(s)	174, 1171
Bsp1286I	GDGCHC	3 cut(s)	231, 416, 667
Bsp13I	TCCGGA	1 cut(s)	135
Bsp1407I	TGTACA	1 cut(s)	1189
Bsp143I	GATC	5 cut(s)	241, 565, 709, 1048, 1156
Bsp19I	CCATGG	1 cut(s)	1104
BspACI	CCGC	1 cut(s)	892
BspANI	GGCC	2 cut(s)	174, 1171
BspCNI	CTCAG	2 cut(s)	789, 1031
BspEI	TCCGGA	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	706
BspOI	GCTAGC	1 cut(s)	806
BspPI	GGATC	3 cut(s)	560, 1043, 1151
BsrGI	TGTACA	1 cut(s)	1189
BsrI	ACTGG	5 cut(s)	69, 332, 681, 964, 1160
BssECI	CCNNGG	3 cut(s)	783, 1104, 1240
BssMI	GATC	5 cut(s)	241, 565, 709, 1048, 1156
BssSI	CACGAG	1 cut(s)	849
BssT1I	CCWWGG	3 cut(s)	783, 1104, 1240
Bst2BI	CACGAG	1 cut(s)	849
Bst4CI	ACNGT	5 cut(s)	239, 380, 475, 737, 822
Bst6I	CTCTTC	3 cut(s)	32, 41, 1244
BstAUI	TGTACA	1 cut(s)	1189
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	367, 804, 969
BstDEI	CTNAG	2 cut(s)	776, 1018
BstDSI	CCRYGG	1 cut(s)	1104
BstF5I	GGATG	3 cut(s)	132, 1008, 1235
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	5 cut(s)	244, 568, 712, 1051, 1159
BstMAI	GTCTC	3 cut(s)	339, 533, 1021
BstMBI	GATC	5 cut(s)	241, 565, 709, 1048, 1156
BstMWI	GCNNNNNNNGC	5 cut(s)	411, 671, 788, 1067, 1177
BstSCI	CCNGG	1 cut(s)	865
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	128, 422
BstV2I	GAAGAC	1 cut(s)	1252
BstX2I	RGATCY	2 cut(s)	565, 1156
BstYI	RGATCY	2 cut(s)	565, 1156
BsuI	GTATCC	2 cut(s)	226, 673
BsuRI	GGCC	2 cut(s)	174, 1171
BtgI	CCRYGG	1 cut(s)	1104
BtsCI	GGATG	3 cut(s)	132, 1008, 1235
BtsIMutI	CAGTG	4 cut(s)	76, 674, 1270, 1282
Cac8I	GCNNGC	3 cut(s)	367, 804, 969
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	1 cut(s)	86
Csp6I	GTAC	3 cut(s)	49, 310, 1190
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviAII	CATG	5 cut(s)	485, 651, 707, 1105, 1181
CviQI	GTAC	3 cut(s)	49, 310, 1190
DdeI	CTNAG	2 cut(s)	776, 1018
DpnI	GATC	5 cut(s)	243, 567, 711, 1050, 1158
DpnII	GATC	5 cut(s)	241, 565, 709, 1048, 1156
EaeI	YGGCCR	1 cut(s)	1169
Eam1104I	CTCTTC	3 cut(s)	32, 41, 1244
EarI	CTCTTC	3 cut(s)	32, 41, 1244
Eco130I	CCWWGG	3 cut(s)	783, 1104, 1240
Eco24I	GRGCYC	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	1246
EcoRV	GATATC	1 cut(s)	838
EcoT14I	CCWWGG	3 cut(s)	783, 1104, 1240
EcoT22I	ATGCAT	3 cut(s)	523, 931, 1182
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	3 cut(s)	783, 1104, 1240
FaeI	CATG	5 cut(s)	488, 654, 710, 1108, 1184
FalI	AAGNNNNNCTT	2 cut(s)	1224, 1256
FatI	CATG	5 cut(s)	484, 650, 706, 1104, 1180
FauI	CCCGC	1 cut(s)	885
FbaI	TGATCA	2 cut(s)	241, 709
FblI	GTMKAC	1 cut(s)	1116
Fnu4HI	GCNGC	2 cut(s)	142, 436
FokI	GGATG	3 cut(s)	119, 1015, 1222
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	142, 436
FspBI	CTAG	4 cut(s)	515, 578, 803, 1028
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	2 cut(s)	142, 436
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	174, 1171
HapII	CCGG	2 cut(s)	136, 867
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	5 cut(s)	488, 654, 710, 1108, 1184
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	527, 774, 884
HpaII	CCGG	2 cut(s)	136, 867
HphI	GGTGA	3 cut(s)	31, 220, 929
Hpy166II	GTNNAC	2 cut(s)	733, 1117
Hpy188I	TCNGA	4 cut(s)	532, 570, 779, 935
Hpy8I	GTNNAC	2 cut(s)	733, 1117
HpyAV	CCTTC	2 cut(s)	395, 764
HpyCH4III	ACNGT	5 cut(s)	239, 380, 475, 737, 822
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	9 cut(s)	144, 279, 365, 521, 659, 686, 845, 929, 1180
HpyF10VI	GCNNNNNNNGC	5 cut(s)	411, 671, 788, 1067, 1177
HpyF3I	CTNAG	2 cut(s)	776, 1018
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	5 cut(s)	488, 654, 710, 1108, 1184
HspAI	GCGC	1 cut(s)	84
Kpn2I	TCCGGA	1 cut(s)	135
Ksp22I	TGATCA	2 cut(s)	241, 709
Kzo9I	GATC	5 cut(s)	241, 565, 709, 1048, 1156
LmnI	GCTCC	2 cut(s)	138, 895
Lsp1109I	GCAGC	2 cut(s)	128, 422
LweI	GCATC	3 cut(s)	508, 1167, 1244
MaeI	CTAG	4 cut(s)	515, 578, 803, 1028
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	3 cut(s)	463, 869, 980
MalI	GATC	5 cut(s)	243, 567, 711, 1050, 1158
MboI	GATC	5 cut(s)	241, 565, 709, 1048, 1156
MflI	RGATCY	2 cut(s)	565, 1156
MhlI	GDGCHC	3 cut(s)	231, 416, 667
MluCI	AATT	8 cut(s)	93, 145, 180, 325, 406, 501, 534, 1084
MlyI	GAGTC	2 cut(s)	536, 768
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	8 cut(s)	71, 387, 451, 654, 683, 888, 1238, 1249
Mph1103I	ATGCAT	3 cut(s)	523, 931, 1182
MroI	TCCGGA	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	702
MslI	CAYNNNNRTG	1 cut(s)	305
MspI	CCGG	2 cut(s)	136, 867
MspR9I	CCNGG	1 cut(s)	867
Mva1269I	GAATGC	1 cut(s)	929
MwoI	GCNNNNNNNGC	5 cut(s)	411, 671, 788, 1067, 1177
NciI	CCSGG	1 cut(s)	867
NcoI	CCATGG	1 cut(s)	1104
NdeII	GATC	5 cut(s)	241, 565, 709, 1048, 1156
NheI	GCTAGC	1 cut(s)	802
NlaIII	CATG	5 cut(s)	488, 654, 710, 1108, 1184
NmuCI	GTSAC	2 cut(s)	463, 980
NsiI	ATGCAT	3 cut(s)	523, 931, 1182
PagI	TCATGA	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	1 cut(s)	985
PctI	GAATGC	1 cut(s)	929
PdmI	GAANNNNTTC	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	884
PkrI	GCNGC	2 cut(s)	143, 437
PleI	GAGTC	2 cut(s)	535, 768
PpsI	GAGTC	2 cut(s)	535, 768
Ppu21I	YACGTR	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	219
PsuI	RGATCY	2 cut(s)	565, 1156
RsaI	GTAC	3 cut(s)	50, 311, 1191
RsaNI	GTAC	3 cut(s)	49, 310, 1190
RseI	CAYNNNNRTG	1 cut(s)	305
SatI	GCNGC	2 cut(s)	142, 436
Sau3AI	GATC	5 cut(s)	241, 565, 709, 1048, 1156
SchI	GAGTC	2 cut(s)	536, 768
ScrFI	CCNGG	1 cut(s)	867
SduI	GDGCHC	3 cut(s)	231, 416, 667
SfaNI	GCATC	3 cut(s)	508, 1167, 1244
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	224, 391
SmoI	CTYRAG	2 cut(s)	224, 391
Sse9I	AATT	8 cut(s)	93, 145, 180, 325, 406, 501, 534, 1084
SsiI	CCGC	1 cut(s)	892
SspI	AATATT	1 cut(s)	757
SspMI	CTAG	4 cut(s)	515, 578, 803, 1028
StyD4I	CCNGG	1 cut(s)	865
StyI	CCWWGG	3 cut(s)	783, 1104, 1240
TaaI	ACNGT	5 cut(s)	239, 380, 475, 737, 822
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	2 cut(s)	619, 1148
TasI	AATT	8 cut(s)	93, 145, 180, 325, 406, 501, 534, 1084
TatI	WGTACW	1 cut(s)	1189
TfiI	GAWTC	1 cut(s)	884
TscAI	CASTG	4 cut(s)	76, 681, 1270, 1282
TseFI	GTSAC	2 cut(s)	463, 980
TseI	GCWGC	2 cut(s)	141, 435
Tsp45I	GTSAC	2 cut(s)	463, 980
TspDTI	ATGAA	6 cut(s)	19, 639, 695, 783, 843, 1019
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	4 cut(s)	76, 681, 1270, 1282
XbaI	TCTAGA	2 cut(s)	514, 577
XmiI	GTMKAC	1 cut(s)	1116
XmnI	GAANNNNTTC	1 cut(s)	702
XspI	CTAG	4 cut(s)	515, 578, 803, 1028
Zsp2I	ATGCAT	3 cut(s)	523, 931, 1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.