Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Reverse (-)

63479644 .. 63495752

Gene Structure 16109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2637 bp

ATGGCATCGGTTGATCTCCTTCATTGTCTGATCCTCACCGTATTTCTGGCCTTTTCCTTTGCTGTATCTGTCCAAACTTCTGACATAGTCCCTTTCCAATGCTCTGCTGCAACAATCGCGAGGTGTGATGCCTCACTATACCACATCAACAGCGGTTTTCAGAAAGAAGAAATCGCCTCTTTTTACTCTGTCAATCCATCTCAAGTCAATCCTATAAAGTATCACAATAAAGACGATCATCTCATAAGTGTACCTTGTTCTTGCAAAAGCATATTCAACACTACTGGATATTTCCATGATACAATCTACAAAGTGAAACCGTCAGACACATTTGATGATGTTTCGAATAAAATCTACAGTGGGCAAGTTTTATCTGTCATAGAAGAACGAAAGCACAACTTTACAATAGGAGCTGATTTTCCCATTCATCTTCCTTGTGGGTGTGTAGATAGTGATTCTCAGATTGTGGTAACATACACAGTTCAGGACAAAGATACACTGACAGATATTGCCACTCTGCTGTCTGCCAAGATAGAAAACATAGAAAGCATGAACAAGAATCAGGTTGAGAACCCGTCATACATACAACCCGGTTGGGTGTTGTTTGTGCCCTCGGAAAAGAATGGACTTAAAAAGCCAGGAAGCAGACACAAGTGGGCAATATTGGTTGGCATACTATCAGTTGTGACATTGCTTTCACTAAGCACATTCATCCTCCTGCTATTTAGGAGAAAAGCTGCAGCCAAAGAAAATATGGAAGCTCCAAAAGTTGTATCCAAAACTTTGTCTGCCAATAAATCTTTTTCGTTGCATAATCAATTACTTCATCAGCAATACATTGAAGATGCAACAGTTTTTGAATCAGACGGACCGGTAGTATTTTCTCTCGAGGAGATAGAAGAGGCTACCGGTTATTTTGATGAAAGTAAGATCATTGGAGAGGGTGGATATGGTAAAGTATACTTCGGAGTACTAGGGGAAAAGGAGGTCGCCATAAAGAAGATGAGATCAAACATGTGCAAAGAATTCTTTGCAGAGCTAAAGGTCTTATGCAAGATCCATCACATTAATGTGGTTGAGCTTTTAGGGTACGCCAGTGGCCATGACCACCTCTACCTGGTCTATGAGTATATTCAGAATGGATCATTGAGCGAACATCTTCATGATCCATTGCTTAAAGGTCATCAGCCTCTCTCCTGGACTGCAAGAACACAAATTGCACTGGATACTGCAAAAGGTATTGAATACATTCATGACCACACAAAAGCTCGATATGTGCACCGTGATATAAAGACAAGTAACATTCTACTTGATGAGGCTCTCAGAGCAAAGGTAGCAGATTTTGGTTTGGCAAAGCTTGTTGGCAGAACCAATGAAGAAGATATTATAGCCACAAGACTCGTTGGAACACCGGGCTATCTCCCTCCAGAATCTGTGCAGGAGCTCCAGGTGACTCACAAGACTGATGTATTTGCATTTGGAGTGGTACTTGGAGAACTGATTACAGGGCAACTTGCACTGTTCCGTGACAACCGGGAGCCTGCAAAGATGAAATCTTTGATTACAGTAATAAAAAAGGTGTTCCAAGATGGTGAACCAGAATTAGCTTTGGAGGCTGTCACAGACCCTAGTCTCCAGGGCAACTATCCTATAGAAGAGATATTCAAGATGGCAGAAATATCAGAGTGGTGTTTGAGTGAAGAAGCAGTGGGAAGGCCAGAAATGAGAGAGATTGTTATGCTGCTCTCACATATAGTGACAACCTCTACTGAGTGGGAAGCATCACTTGGCGGTAACAGTCAAAAACGACGTCGTCGTGAGGCCCTAAAGCTCCAGCCTTTAGATCTACCTGAGCTCTCATTTGACTTCCCCACCAATCCAGAATCACAGATCGCATCCGGTGGTTTCCGATCTGAGCCTCCCCCAGAAACCCTAATGGCAGGGGCAGTCTCGGGGCTGTTCCTCCTAGACATCAAAGGCCGCGTTCTCATCTGGCGCGACTATCGTGGCGACGTCTCCGCCGTCCAGGCCGAGCGCTTCTTCACCAAGCTCATCGAGAAAGAGGTTGATGCAGAGTCACACGATCCGGTTGTGCACGATAATGGCGTAAGCTACATGTTTCTACAGCATAACAATGTGTACCTGATGGCGGCGTCTAGGCAGAACTGCAATGCTGCCAGCATTCTCTTCTTTCTGCACCGCATTGTTGATGTGTTCAAGCATTATTTTGAAGAGTTAGAAGAGGAATCGCTTAGGGATAACTTTGTGGTTGTGTATGAGTTGCTGGATGAAATGATGGACTTCGGTTACCCTCAGTTTACTGAAGCGAAGATTTTAAGCGAGTTTATCAAGACTGATGCTTACAGGATGGAAGTTAACCAGAGGCCCCCAATGGCCGTAACAAATGCAGTGTCTTGGCGCAGTGAAGGGATACGTTACAAGAAGAATGAGGTTTTCCTTGATGTAGTGGAGAGCGTTAATATACTCGTCAACAGCAATGGTCAAATCATTAGGTCTGATGTTGTTGGTGCTTTGAAGATGAGAACTTATTTGAGGTGTGTTTTCACTGTTATGTTTCCTCTAGCAAAGATATCTATTTTATTTCCTTATTCAAAAAAAGATATCTATTTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

878

Amino Acids

99.05

Weight (kDa)

5.59

Isoelectric Point (pI)

41.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	307 - 578	1.2e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	309 - 579	7.7e-44	Protein tyrosine and serine/threonine kinase
Clat_adaptor_s	PF01217	652 - 772	1.7e-06	Clathrin adaptor complex small chain
Adap_comp_sub	PF00928	804 - 863	3.1e-14	Adaptor complexes medium subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	1813, 2016
AccI	GTMKAC	1 cut(s)	960
AccII	CGCG	3 cut(s)	119, 1983, 1998
AciI	CCGC	6 cut(s)	153, 1791, 1981, 2019, 2150, 2200
AclWI	GGATC	5 cut(s)	25, 1051, 1150, 1160, 2078
AcoI	YGGCCR	2 cut(s)	1099, 2394
AcsI	RAATTY	1 cut(s)	1025
AcuI	CTGAAG	1 cut(s)	2343
AcyI	GRCGYC	3 cut(s)	1810, 2013, 2153
AfaI	GTAC	5 cut(s)	252, 972, 1091, 1488, 2141
AfeI	AGCGCT	1 cut(s)	2036
AfiI	CCNNNNNNNGG	2 cut(s)	1117, 2149
AflIII	ACRYGT	2 cut(s)	1014, 2115
AgeI	ACCGGT	2 cut(s)	871, 908
AgsI	TTSAA	9 cut(s)	277, 842, 860, 1244, 1666, 2218, 2231, 2536, 2613
AjnI	CCWGG	6 cut(s)	637, 1116, 1196, 1446, 1635, 2025
AjuI	GAANNNNNNNTTGG	2 cut(s)	1770, 1802
Alw21I	GWGCWC	4 cut(s)	1281, 1446, 1857, 2097
Alw26I	GTCTC	3 cut(s)	1637, 1954, 2020
Alw44I	GTGCAC	2 cut(s)	1277, 2093
AlwI	GGATC	5 cut(s)	25, 1051, 1150, 1160, 2078
AlwNI	CAGNNNCTG	1 cut(s)	1433
Ama87I	CYCGRG	2 cut(s)	887, 1951
Aor51HI	AGCGCT	1 cut(s)	2036
AoxI	GGCC	8 cut(s)	48, 1099, 1715, 1821, 1978, 2028, 2384, 2394
ApaLI	GTGCAC	2 cut(s)	1277, 2093
ApeKI	GCWGC	5 cut(s)	107, 737, 740, 1741, 2174
ApoI	RAATTY	1 cut(s)	1025
ArsI	GACNNNNNNTTYG	4 cut(s)	1795, 1827, 2396, 2428
AseI	ATTAAT	1 cut(s)	1068
AsiGI	ACCGGT	2 cut(s)	871, 908
Asp700I	GAANNNNTTC	2 cut(s)	1158, 1248
AspLEI	GCGC	3 cut(s)	1998, 2037, 2421
AspS9I	GGNCC	3 cut(s)	869, 1822, 2385
AsuC2I	CCSGG	3 cut(s)	591, 1413, 1535
AsuHPI	GGTGA	4 cut(s)	28, 1462, 1604, 2035
AsuII	TTCGAA	1 cut(s)	344
AvaI	CYCGRG	2 cut(s)	887, 1951
AvaII	GGWCC	1 cut(s)	869
BaeGI	GKGCMC	3 cut(s)	612, 1281, 2097
BaeI	ACNNNNGTAYC	2 cut(s)	1081, 1114
BalI	TGGCCA	1 cut(s)	1101
BanII	GRGCYC	2 cut(s)	1446, 1857
Bbv12I	GWGCWC	4 cut(s)	1281, 1446, 1857, 2097
BbvI	GCAGC	5 cut(s)	94, 724, 752, 1728, 2161
BccI	CCATC	7 cut(s)	205, 1068, 1583, 1663, 2140, 2290, 2362
BceAI	ACGGC	2 cut(s)	2006, 2381
BciT130I	CCWGG	6 cut(s)	639, 1118, 1198, 1448, 1637, 2027
BciVI	GTATCC	3 cut(s)	784, 1219, 2424
BcnI	CCSGG	3 cut(s)	591, 1413, 1535
BcoDI	GTCTC	3 cut(s)	1637, 1954, 2020
BfaI	CTAG	5 cut(s)	974, 1629, 1967, 2157, 2582
BfmI	CTRYAG	4 cut(s)	355, 738, 1650, 2123
BfoI	RGCGCY	1 cut(s)	2038
BfuI	GTATCC	3 cut(s)	784, 1219, 2424
BglI	GCCNNNNNGGC	1 cut(s)	2027
BglII	AGATCT	1 cut(s)	1843
BisI	GCNGC	7 cut(s)	108, 738, 741, 1742, 1981, 2151, 2175
BlsI	GCNGC	7 cut(s)	109, 739, 742, 1743, 1982, 2152, 2176
BmcAI	AGTACT	1 cut(s)	972
Bme1390I	CCNGG	9 cut(s)	591, 639, 1118, 1198, 1413, 1448, 1535, 1637, 2027
Bme18I	GGWCC	1 cut(s)	869
BmeT110I	CYCGRG	2 cut(s)	887, 1951
BmgT120I	GGNCC	3 cut(s)	869, 1822, 2385
BmiI	GGNNCC	2 cut(s)	1539, 2387
BmrFI	CCNGG	9 cut(s)	591, 639, 1118, 1198, 1413, 1448, 1535, 1637, 2027
BmsI	GCATC	7 cut(s)	14, 118, 835, 1790, 1904, 2059, 2347
BoxI	GACNNNNGTC	1 cut(s)	1629
BpmI	CTGGAG	4 cut(s)	1410, 1430, 1619, 1817
Bpu10I	CCTNAGC	2 cut(s)	1851, 2252
Bpu14I	TTCGAA	1 cut(s)	344
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	3 cut(s)	591, 1413, 1535
BsaHI	GRCGYC	3 cut(s)	1810, 2013, 2153
BsaJI	CCNNGG	2 cut(s)	612, 1636
BsaWI	WCCGGW	4 cut(s)	871, 908, 1898, 2086
Bsc4I	CCNNNNNNNGG	2 cut(s)	1117, 2149
Bse118I	RCCGGY	2 cut(s)	871, 908
Bse1I	ACTGG	3 cut(s)	289, 1095, 1227
Bse3DI	GCAATG	4 cut(s)	689, 1169, 2176, 2503
BseBI	CCWGG	6 cut(s)	639, 1118, 1198, 1448, 1637, 2027
BseDI	CCNNGG	2 cut(s)	612, 1636
BseGI	GGATG	4 cut(s)	711, 1895, 2293, 2373
BseLI	CCNNNNNNNGG	2 cut(s)	1117, 2149
BseMI	GCAATG	4 cut(s)	689, 1169, 2176, 2503
BseMII	CTCAG	6 cut(s)	473, 1336, 1761, 1842, 1905, 2327
BseNI	ACTGG	3 cut(s)	289, 1095, 1227
BseRI	GAGGAG	1 cut(s)	905
BseSI	GKGCMC	3 cut(s)	612, 1281, 2097
BseXI	GCAGC	5 cut(s)	94, 724, 752, 1728, 2161
BsgI	GTGCAG	2 cut(s)	1457, 2180
Bsh1236I	CGCG	3 cut(s)	119, 1983, 1998
BshFI	GGCC	8 cut(s)	50, 1101, 1717, 1823, 1980, 2030, 2386, 2396
BshTI	ACCGGT	2 cut(s)	871, 908
BsiHKAI	GWGCWC	4 cut(s)	1281, 1446, 1857, 2097
BsiHKCI	CYCGRG	2 cut(s)	887, 1951
BsiSI	CCGG	7 cut(s)	591, 872, 909, 1412, 1534, 1899, 2087
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	2 cut(s)	1117, 2149
BsmAI	GTCTC	3 cut(s)	1637, 1954, 2020
BsmBI	CGTCTC	1 cut(s)	2020
BsmFI	GGGAC	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	2181
BsnI	GGCC	8 cut(s)	50, 1101, 1717, 1823, 1980, 2030, 2386, 2396
BsoBI	CYCGRG	2 cut(s)	887, 1951
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	5 cut(s)	612, 1281, 1446, 1857, 2097
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	6 cut(s)	153, 1791, 1981, 2019, 2150, 2200
BspANI	GGCC	8 cut(s)	50, 1101, 1717, 1823, 1980, 2030, 2386, 2396
BspCNI	CTCAG	6 cut(s)	472, 1335, 1762, 1843, 1906, 2326
BspFNI	CGCG	3 cut(s)	119, 1983, 1998
BspHI	TCATGA	2 cut(s)	1162, 1252
BspLI	GGNNCC	2 cut(s)	1539, 2387
BspMAI	CTGCAG	1 cut(s)	742
BspPI	GGATC	5 cut(s)	25, 1051, 1150, 1160, 2078
BspT104I	TTCGAA	1 cut(s)	344
BsrDI	GCAATG	4 cut(s)	689, 1169, 2176, 2503
BsrFI	RCCGGY	2 cut(s)	871, 908
BsrI	ACTGG	3 cut(s)	289, 1095, 1227
BssAI	RCCGGY	2 cut(s)	871, 908
BssECI	CCNNGG	2 cut(s)	612, 1636
BssNAI	GTATAC	1 cut(s)	961
BssNI	GRCGYC	3 cut(s)	1810, 2013, 2153
Bst1107I	GTATAC	1 cut(s)	961
Bst2UI	CCWGG	6 cut(s)	639, 1118, 1198, 1448, 1637, 2027
Bst6I	CTCTTC	5 cut(s)	894, 1650, 2192, 2226, 2235
BstACI	GRCGYC	3 cut(s)	1810, 2013, 2153
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	1542, 2179
BstDEI	CTNAG	8 cut(s)	459, 701, 1322, 1770, 1851, 1914, 2252, 2313
BstEII	GGTNACC	1 cut(s)	2306
BstF5I	GGATG	4 cut(s)	711, 1895, 2293, 2373
BstFNI	CGCG	3 cut(s)	119, 1983, 1998
BstH2I	RGCGCY	1 cut(s)	2038
BstHHI	GCGC	3 cut(s)	1998, 2037, 2421
BstMAI	GTCTC	3 cut(s)	1637, 1954, 2020
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 1325, 1334, 1613, 2027
BstNI	CCWGG	6 cut(s)	639, 1118, 1198, 1448, 1637, 2027
BstNSI	RCATGY	2 cut(s)	1018, 2119
BstPAI	GACNNNNGTC	1 cut(s)	1629
BstPI	GGTNACC	1 cut(s)	2306
BstSCI	CCNGG	9 cut(s)	589, 637, 1116, 1196, 1411, 1446, 1533, 1635, 2025
BstSFI	CTRYAG	4 cut(s)	355, 738, 1650, 2123
BstSLI	GKGCMC	3 cut(s)	612, 1281, 2097
BstUI	CGCG	3 cut(s)	119, 1983, 1998
BstV1I	GCAGC	5 cut(s)	94, 724, 752, 1728, 2161
BstX2I	RGATCY	2 cut(s)	1056, 1843
BstYI	RGATCY	2 cut(s)	1056, 1843
BstZ17I	GTATAC	1 cut(s)	961
BsuI	GTATCC	3 cut(s)	784, 1219, 2424
BsuRI	GGCC	8 cut(s)	50, 1101, 1717, 1823, 1980, 2030, 2386, 2396
BtsCI	GGATG	4 cut(s)	711, 1895, 2293, 2373
BtsI	GCAGTG	3 cut(s)	1713, 2415, 2428
BtsIMutI	CAGTG	9 cut(s)	364, 497, 1102, 1220, 1517, 1713, 2415, 2428, 2565
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	1542, 2179
CaiI	CAGNNNCTG	1 cut(s)	1433
CciI	TCATGA	2 cut(s)	1162, 1252
CfoI	GCGC	3 cut(s)	1998, 2037, 2421
Cfr10I	RCCGGY	2 cut(s)	871, 908
Cfr13I	GGNCC	3 cut(s)	869, 1822, 2385
CpoI	CGGWCCG	1 cut(s)	869
CseI	GACGC	1 cut(s)	2142
CsiI	ACCWGGT	1 cut(s)	1116
Csp6I	GTAC	5 cut(s)	251, 971, 1090, 1487, 2140
CspAI	ACCGGT	2 cut(s)	871, 908
CspI	CGGWCCG	1 cut(s)	869
CviAII	CATG	7 cut(s)	296, 550, 1015, 1103, 1163, 1253, 2116
CviQI	GTAC	5 cut(s)	251, 971, 1090, 1487, 2140
DdeI	CTNAG	8 cut(s)	459, 701, 1322, 1770, 1851, 1914, 2252, 2313
EaeI	YGGCCR	2 cut(s)	1099, 2394
Eam1104I	CTCTTC	5 cut(s)	894, 1650, 2192, 2226, 2235
EarI	CTCTTC	5 cut(s)	894, 1650, 2192, 2226, 2235
EciI	GGCGGA	1 cut(s)	2008
Ecl136II	GAGCTC	2 cut(s)	1444, 1855
Eco24I	GRGCYC	2 cut(s)	1446, 1857
Eco32I	GATATC	2 cut(s)	2592, 2623
Eco47I	GGWCC	1 cut(s)	869
Eco47III	AGCGCT	1 cut(s)	2036
Eco53kI	GAGCTC	2 cut(s)	1444, 1855
Eco57I	CTGAAG	1 cut(s)	2343
Eco88I	CYCGRG	2 cut(s)	887, 1951
Eco91I	GGTNACC	1 cut(s)	2306
EcoICRI	GAGCTC	2 cut(s)	1444, 1855
EcoO109I	RGGNCCY	2 cut(s)	1822, 2385
EcoO65I	GGTNACC	1 cut(s)	2306
EcoRI	GAATTC	1 cut(s)	1025
EcoRII	CCWGG	6 cut(s)	637, 1116, 1196, 1446, 1635, 2025
EcoRV	GATATC	2 cut(s)	2592, 2623
EcoT38I	GRGCYC	2 cut(s)	1446, 1857
Esp3I	CGTCTC	1 cut(s)	2020
FaeI	CATG	7 cut(s)	299, 553, 1018, 1106, 1166, 1256, 2119
FalI	AAGNNNNNCTT	6 cut(s)	238, 270, 383, 415, 1770, 1802
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	7 cut(s)	295, 549, 1014, 1102, 1162, 1252, 2115
FblI	GTMKAC	1 cut(s)	960
Fnu4HI	GCNGC	7 cut(s)	108, 738, 741, 1742, 1981, 2151, 2175
FokI	GGATG	4 cut(s)	698, 1882, 2300, 2380
FriOI	GRGCYC	2 cut(s)	1446, 1857
Fsp4HI	GCNGC	7 cut(s)	108, 738, 741, 1742, 1981, 2151, 2175
FspBI	CTAG	5 cut(s)	974, 1629, 1967, 2157, 2582
GlaI	GCGC	3 cut(s)	1997, 2036, 2420
GluI	GCNGC	7 cut(s)	108, 738, 741, 1742, 1981, 2151, 2175
GsuI	CTGGAG	4 cut(s)	1410, 1430, 1619, 1817
HaeII	RGCGCY	1 cut(s)	2038
HaeIII	GGCC	8 cut(s)	50, 1101, 1717, 1823, 1980, 2030, 2386, 2396
HapII	CCGG	7 cut(s)	591, 872, 909, 1412, 1534, 1899, 2087
HgaI	GACGC	1 cut(s)	2142
HhaI	GCGC	3 cut(s)	1998, 2037, 2421
Hin1I	GRCGYC	3 cut(s)	1810, 2013, 2153
Hin1II	CATG	7 cut(s)	299, 553, 1018, 1106, 1166, 1256, 2119
Hin6I	GCGC	3 cut(s)	1996, 2035, 2419
HinP1I	GCGC	3 cut(s)	1996, 2035, 2419
HincII	GTYRAC	2 cut(s)	2377, 2491
HindII	GTYRAC	2 cut(s)	2377, 2491
HindIII	AAGCTT	1 cut(s)	1355
HinfI	GANTC	9 cut(s)	455, 559, 860, 1398, 1430, 1453, 1883, 2075, 2246
HpaI	GTTAAC	1 cut(s)	2377
HpaII	CCGG	7 cut(s)	591, 872, 909, 1412, 1534, 1899, 2087
HphI	GGTGA	4 cut(s)	28, 1462, 1604, 2035
Hpy166II	GTNNAC	9 cut(s)	251, 961, 1279, 1595, 2095, 2140, 2319, 2377, 2491
Hpy8I	GTNNAC	9 cut(s)	251, 961, 1279, 1595, 2095, 2140, 2319, 2377, 2491
Hpy99I	CGWCG	4 cut(s)	1812, 1815, 1818, 2015
HpyAV	CCTTC	3 cut(s)	29, 1707, 2420
HpyCH4IV	ACGT	3 cut(s)	1810, 2013, 2434
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 1325, 1334, 1613, 2027
HpyF3I	CTNAG	8 cut(s)	459, 701, 1322, 1770, 1851, 1914, 2252, 2313
HpySE526I	ACGT	3 cut(s)	1810, 2013, 2434
Hsp92I	GRCGYC	3 cut(s)	1810, 2013, 2153
Hsp92II	CATG	7 cut(s)	299, 553, 1018, 1106, 1166, 1256, 2119
HspAI	GCGC	3 cut(s)	1996, 2035, 2419
KspAI	GTTAAC	1 cut(s)	2377
LmnI	GCTCC	6 cut(s)	410, 766, 1441, 1449, 1537, 1836
Lsp1109I	GCAGC	5 cut(s)	94, 724, 752, 1728, 2161
LweI	GCATC	7 cut(s)	14, 118, 835, 1790, 1904, 2059, 2347
MabI	ACCWGGT	1 cut(s)	1116
MaeI	CTAG	5 cut(s)	974, 1629, 1967, 2157, 2582
MaeII	ACGT	3 cut(s)	1810, 2013, 2434
MflI	RGATCY	2 cut(s)	1056, 1843
MhlI	GDGCHC	5 cut(s)	612, 1281, 1446, 1857, 2097
MlsI	TGGCCA	1 cut(s)	1101
MluCI	AATT	4 cut(s)	818, 1025, 1215, 1601
MluNI	TGGCCA	1 cut(s)	1101
MlyI	GAGTC	3 cut(s)	1392, 1447, 2084
MmeI	TCCRAC	1 cut(s)	1384
Mox20I	TGGCCA	1 cut(s)	1101
MroXI	GAANNNNTTC	2 cut(s)	1158, 1248
MscI	TGGCCA	1 cut(s)	1101
MseI	TTAA	6 cut(s)	630, 1068, 1176, 2336, 2376, 2478
MslI	CAYNNNNRTG	6 cut(s)	1068, 1070, 1161, 2100, 2133, 2570
Msp20I	TGGCCA	1 cut(s)	1101
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	7 cut(s)	591, 872, 909, 1412, 1534, 1899, 2087
MspR9I	CCNGG	9 cut(s)	591, 639, 1118, 1198, 1413, 1448, 1535, 1637, 2027
Mva1269I	GAATGC	1 cut(s)	2181
MvaI	CCWGG	6 cut(s)	639, 1118, 1198, 1448, 1637, 2027
MvnI	CGCG	3 cut(s)	119, 1983, 1998
MwoI	GCNNNNNNNGC	5 cut(s)	116, 1325, 1334, 1613, 2027
NciI	CCSGG	3 cut(s)	591, 1413, 1535
NlaIII	CATG	7 cut(s)	299, 553, 1018, 1106, 1166, 1256, 2119
NlaIV	GGNNCC	2 cut(s)	1539, 2387
NmeAIII	GCCGAG	1 cut(s)	2056
NmuCI	GTSAC	6 cut(s)	685, 1450, 1526, 1618, 1756, 2076
NruI	TCGCGA	1 cut(s)	119
NspI	RCATGY	2 cut(s)	1018, 2119
NspV	TTCGAA	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	887
PagI	TCATGA	2 cut(s)	1162, 1252
PciI	ACATGT	2 cut(s)	1014, 2115
PcsI	WCGNNNNNNNCGW	3 cut(s)	1813, 2019, 2103
PctI	GAATGC	1 cut(s)	2181
PdmI	GAANNNNTTC	2 cut(s)	1158, 1248
PfeI	GAWTC	6 cut(s)	455, 559, 860, 1430, 1883, 2246
PflFI	GACNNNGTC	2 cut(s)	86, 1812
PfoI	TCCNGGA	1 cut(s)	1196
PinAI	ACCGGT	2 cut(s)	871, 908
PkrI	GCNGC	7 cut(s)	109, 739, 742, 1743, 1982, 2152, 2176
PleI	GAGTC	3 cut(s)	1392, 1447, 2083
PpsI	GAGTC	3 cut(s)	1392, 1447, 2083
PscI	ACATGT	2 cut(s)	1014, 2115
PshAI	GACNNNNGTC	1 cut(s)	1629
PshBI	ATTAAT	1 cut(s)	1068
Psp124BI	GAGCTC	2 cut(s)	1446, 1857
Psp6I	CCWGG	6 cut(s)	637, 1116, 1196, 1446, 1635, 2025
PspEI	GGTNACC	1 cut(s)	2306
PspGI	CCWGG	6 cut(s)	637, 1116, 1196, 1446, 1635, 2025
PspN4I	GGNNCC	2 cut(s)	1539, 2387
PspPI	GGNCC	3 cut(s)	869, 1822, 2385
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PstI	CTGCAG	1 cut(s)	742
PstNI	CAGNNNCTG	1 cut(s)	1433
PsuI	RGATCY	2 cut(s)	1056, 1843
PsyI	GACNNNGTC	2 cut(s)	86, 1812
RruI	TCGCGA	1 cut(s)	119
RsaI	GTAC	5 cut(s)	252, 972, 1091, 1488, 2141
RsaNI	GTAC	5 cut(s)	251, 971, 1090, 1487, 2140
RseI	CAYNNNNRTG	6 cut(s)	1068, 1070, 1161, 2100, 2133, 2570
Rsr2I	CGGWCCG	1 cut(s)	869
RsrII	CGGWCCG	1 cut(s)	869
SacI	GAGCTC	2 cut(s)	1446, 1857
SaqAI	TTAA	6 cut(s)	630, 1068, 1176, 2336, 2376, 2478
SatI	GCNGC	7 cut(s)	108, 738, 741, 1742, 1981, 2151, 2175
Sau96I	GGNCC	3 cut(s)	869, 1822, 2385
ScaI	AGTACT	1 cut(s)	972
SchI	GAGTC	3 cut(s)	1392, 1447, 2084
ScrFI	CCNGG	9 cut(s)	591, 639, 1118, 1198, 1413, 1448, 1535, 1637, 2027
SduI	GDGCHC	5 cut(s)	612, 1281, 1446, 1857, 2097
SexAI	ACCWGGT	1 cut(s)	1116
SfaNI	GCATC	7 cut(s)	14, 118, 835, 1790, 1904, 2059, 2347
SfcI	CTRYAG	4 cut(s)	355, 738, 1650, 2123
Sfr274I	CTCGAG	1 cut(s)	887
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	869
SlaI	CTCGAG	1 cut(s)	887
SmiMI	CAYNNNNRTG	6 cut(s)	1068, 1070, 1161, 2100, 2133, 2570
SmlI	CTYRAG	2 cut(s)	201, 887
SmoI	CTYRAG	2 cut(s)	201, 887
Sse9I	AATT	4 cut(s)	818, 1025, 1215, 1601
SsiI	CCGC	6 cut(s)	153, 1791, 1981, 2019, 2150, 2200
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	5 cut(s)	974, 1629, 1967, 2157, 2582
SstI	GAGCTC	2 cut(s)	1446, 1857
StyD4I	CCNGG	9 cut(s)	589, 637, 1116, 1196, 1411, 1446, 1533, 1635, 2025
TaiI	ACGT	3 cut(s)	1813, 2016, 2437
TaqI	TCGA	4 cut(s)	344, 888, 1270, 2055
TasI	AATT	4 cut(s)	818, 1025, 1215, 1601
TatI	WGTACW	1 cut(s)	970
TauI	GCSGC	2 cut(s)	1983, 2153
TfiI	GAWTC	6 cut(s)	455, 559, 860, 1430, 1883, 2246
Tru1I	TTAA	6 cut(s)	630, 1068, 1176, 2336, 2376, 2478
Tru9I	TTAA	6 cut(s)	630, 1068, 1176, 2336, 2376, 2478
TscAI	CASTG	9 cut(s)	364, 504, 1102, 1227, 1524, 1713, 2415, 2428, 2572
TseFI	GTSAC	6 cut(s)	685, 1450, 1526, 1618, 1756, 2076
TseI	GCWGC	5 cut(s)	107, 737, 740, 1741, 2174
Tsp45I	GTSAC	6 cut(s)	685, 1450, 1526, 1618, 1756, 2076
TspGWI	ACGGA	2 cut(s)	882, 1514
TspRI	CASTG	9 cut(s)	364, 504, 1102, 1227, 1524, 1713, 2415, 2428, 2572
Tth111I	GACNNNGTC	2 cut(s)	86, 1812
VneI	GTGCAC	2 cut(s)	1277, 2093
VpaK11BI	GGWCC	1 cut(s)	869
VspI	ATTAAT	1 cut(s)	1068
XapI	RAATTY	1 cut(s)	1025
XceI	RCATGY	2 cut(s)	1018, 2119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	887
XmiI	GTMKAC	1 cut(s)	960
XmnI	GAANNNNTTC	2 cut(s)	1158, 1248
XspI	CTAG	5 cut(s)	974, 1629, 1967, 2157, 2582
ZraI	GACGTC	2 cut(s)	1811, 2014
ZrmI	AGTACT	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.