Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Reverse (-)

31841826 .. 31850926

Gene Structure 9101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGGTGATGATGTGCACCTTGTGAACTCAAGTGCGAAGAAACGTACCTCACTAAAGCAACAGTTTTTTCAAAAAGAAATGGAAGGTAAAGGAAAAATCTTAACTCAATCTTATAGCATTAATGCCTCAATTAGTTCACTCACATCAATATCTTCTTGCTGCAGAATTAAACTTTTTGAGAATGAGAGATTGGTTATATATACTATGAAGGAGATCAAAGTGGCTATGAATAACTTTGATGATACCAGAAAGATTAGAGAGGGTGGATCCGTTTGTGTTTACAAAGCCATATTAGGCGAAGCAGAAGTTGCAATTAAGAATTCTCTGCTGAGCTCATGCAGCATCGAATTAGATCAAATCATTGGACTAACCAATTCTACCCAAGCTAAACCATTCATGTTCATAATGCCGACAATATTTTTCCGGTTCGGTGTTGTTAATTTTTTTGCCGGAACCGACTTGGAACCGGAATCGTTTAGTTCGGTTCGGTTACGGTTTCGTACACACAGCAAAACAGCAAAGCAAAGCTGCAAAGCTATCCAGCTTCCTAGCCACATCACGTTTTGCAAATTTTTCGATTCTCCATCAAAGAACACGACAAATCTAAAAACACCAAGTCCGCAAAAAGTCAAACACCCTTCGATGCTTATCCGAAAGAAATCAAGCAAACCCAAACAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

227

Amino Acids

25.55

Weight (kDa)

9.8

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	620
AclWI	GGATC	2 cut(s)	261, 274
AcsI	RAATTY	2 cut(s)	319, 569
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	2 cut(s)	46, 502
AgsI	TTSAA	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	173, 205
AluBI	AGCT	5 cut(s)	333, 386, 528, 536, 544
AluI	AGCT	5 cut(s)	333, 386, 528, 536, 544
Alw21I	GWGCWC	2 cut(s)	18, 335
Alw44I	GTGCAC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	261, 274
ApaLI	GTGCAC	1 cut(s)	14
ApeKI	GCWGC	3 cut(s)	159, 339, 528
ApoI	RAATTY	2 cut(s)	319, 569
AseI	ATTAAT	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	18
BamHI	GGATCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	335
Bbv12I	GWGCWC	2 cut(s)	18, 335
BbvI	GCAGC	3 cut(s)	146, 351, 515
BccI	CCATC	1 cut(s)	592
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BfaI	CTAG	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	3 cut(s)	160, 340, 529
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	3 cut(s)	161, 341, 530
BmiI	GGNNCC	3 cut(s)	268, 454, 465
BmsI	GCATC	2 cut(s)	351, 633
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	647
BsaWI	WCCGGW	2 cut(s)	423, 466
Bse8I	GATNNNNATC	1 cut(s)	647
BseJI	GATNNNNATC	1 cut(s)	647
BseMII	CTCAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	146, 351, 515
BsiHKAI	GWGCWC	2 cut(s)	18, 335
BsiSI	CCGG	3 cut(s)	424, 450, 467
Bsp1286I	GDGCHC	2 cut(s)	18, 335
Bsp143I	GATC	3 cut(s)	213, 266, 352
Bsp1720I	GCTNAGC	1 cut(s)	329
BspACI	CCGC	1 cut(s)	620
BspCNI	CTCAG	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	268, 454, 465
BspMAI	CTGCAG	1 cut(s)	164
BspPI	GGATC	2 cut(s)	261, 274
BssMI	GATC	3 cut(s)	213, 266, 352
Bst4CI	ACNGT	2 cut(s)	63, 495
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	329
BstKTI	GATC	3 cut(s)	216, 269, 355
BstMBI	GATC	3 cut(s)	213, 266, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 339
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	146, 351, 515
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	45, 501
CviAII	CATG	2 cut(s)	336, 397
CviJI	RGCY	8 cut(s)	224, 287, 333, 386, 528, 536, 544, 552
CviKI_1	RGCY	8 cut(s)	224, 287, 333, 386, 528, 536, 544, 552
CviQI	GTAC	2 cut(s)	45, 501
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	215, 268, 354
DpnII	GATC	3 cut(s)	213, 266, 352
DraIII	CACNNNGTG	1 cut(s)	22
Ecl136II	GAGCTC	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	335
Eco53kI	GAGCTC	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	333
EcoRI	GAATTC	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	335
FaeI	CATG	2 cut(s)	339, 400
FatI	CATG	2 cut(s)	335, 396
Fnu4HI	GCNGC	3 cut(s)	160, 340, 529
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	160, 340, 529
FspBI	CTAG	1 cut(s)	549
GluI	GCNGC	3 cut(s)	160, 340, 529
HapII	CCGG	3 cut(s)	424, 450, 467
Hin1II	CATG	2 cut(s)	339, 400
HinfI	GANTC	2 cut(s)	470, 578
HpaII	CCGG	3 cut(s)	424, 450, 467
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	5 cut(s)	16, 25, 137, 280, 503
Hpy188I	TCNGA	1 cut(s)	653
Hpy8I	GTNNAC	5 cut(s)	16, 25, 137, 280, 503
HpyAV	CCTTC	3 cut(s)	77, 202, 648
HpyCH4III	ACNGT	2 cut(s)	63, 495
HpyCH4IV	ACGT	2 cut(s)	43, 560
HpyCH4V	TGCA	6 cut(s)	16, 162, 311, 339, 531, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 339
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	2 cut(s)	43, 560
Hsp92II	CATG	2 cut(s)	339, 400
Kzo9I	GATC	3 cut(s)	213, 266, 352
LpnPI	CCDG	5 cut(s)	259, 437, 463, 480, 554
Lsp1109I	GCAGC	3 cut(s)	146, 351, 515
LweI	GCATC	2 cut(s)	351, 633
MaeI	CTAG	1 cut(s)	549
MaeII	ACGT	2 cut(s)	43, 560
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	3 cut(s)	215, 268, 354
MboI	GATC	3 cut(s)	213, 266, 352
MboII	GAAGA	2 cut(s)	49, 144
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	2 cut(s)	18, 335
MluCI	AATT	9 cut(s)	129, 165, 312, 319, 347, 373, 439, 569, 679
MnlI	CCTC	3 cut(s)	58, 136, 253
MseI	TTAA	5 cut(s)	101, 120, 168, 315, 438
MspI	CCGG	3 cut(s)	424, 450, 467
MwoI	GCNNNNNNNGC	2 cut(s)	308, 339
NdeII	GATC	3 cut(s)	213, 266, 352
NlaIII	CATG	2 cut(s)	339, 400
NlaIV	GGNNCC	3 cut(s)	268, 454, 465
PfeI	GAWTC	2 cut(s)	470, 578
PkrI	GCNGC	3 cut(s)	161, 341, 530
PshBI	ATTAAT	1 cut(s)	120
Psp124BI	GAGCTC	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	268, 454, 465
PstI	CTGCAG	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	2 cut(s)	46, 502
RsaNI	GTAC	2 cut(s)	45, 501
SacI	GAGCTC	1 cut(s)	335
SaqAI	TTAA	5 cut(s)	101, 120, 168, 315, 438
SatI	GCNGC	3 cut(s)	160, 340, 529
Sau3AI	GATC	3 cut(s)	213, 266, 352
SduI	GDGCHC	2 cut(s)	18, 335
SfaNI	GCATC	2 cut(s)	351, 633
SfcI	CTRYAG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	9 cut(s)	129, 165, 312, 319, 347, 373, 439, 569, 679
SsiI	CCGC	1 cut(s)	620
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	1 cut(s)	549
SstI	GAGCTC	1 cut(s)	335
TaaI	ACNGT	2 cut(s)	63, 495
TaiI	ACGT	2 cut(s)	46, 563
TaqI	TCGA	3 cut(s)	345, 576, 641
TasI	AATT	9 cut(s)	129, 165, 312, 319, 347, 373, 439, 569, 679
TfiI	GAWTC	2 cut(s)	470, 578
Tru1I	TTAA	5 cut(s)	101, 120, 168, 315, 438
Tru9I	TTAA	5 cut(s)	101, 120, 168, 315, 438
TseI	GCWGC	3 cut(s)	159, 339, 528
TspDTI	ATGAA	4 cut(s)	221, 242, 385, 391
TspGWI	ACGGA	1 cut(s)	259
VneI	GTGCAC	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	2 cut(s)	319, 569
XspI	CTAG	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.