Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Reverse (-)

6926593 .. 6928354

Gene Structure 1762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1097500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAACTGCTCTGTGGAAATCATGACATGTAACGCCTCGCTCTACCACATCAACATCGATCTGAAGATAAAAGAAATCGCAACTTTGTACACCGTCTATCCATCCAAAATCAGACCTATAAAGTACAAGAAGAAACGAGATTCCCACATAAGTGTGCCTTGTTCTTGCCAGAACGTATCCGGCACTGTTGGATATTTCTATGACACAACCTACAAGTGGGCAGCCTTTGTCAAAGAAGAGCTACCGAAGTTTAAAGTAGATGCCGATTTTCCCATCCATATCCCGTGCGGTTGCGTACAGAGCCAGTCTCAGATTGTGGTGACATATACAGTTCAGGAGCTTGATACAGTGTCGGATATTGGCACACTGCTGTCTGCGAAGATCAAAAACATCGAAGATATGAACAAAAATACGACAGAAAATCCTTCGTTCATAGTTGTGGGTTGGGTGCTGTTTGTCCCCGTGGAAAAGAATGGATTTAGAACATCAAGGCCAGACGGACCGGTCATATTTAGCCTTGAGGAGATTGAGGAGATTGAGGAGATTGAGGAGGCTACTGGTTACTTCAATGAAACTAAGAAAATCGGAGAGGGTGTGCCAAGGGGCCCACTTTTGTTTGTTGTCCCTGGCCCAAGCCTTCCATCTCTCTCTCCCGGTCTCACTCTTTCTCTCCTTCTCTCTTTCCCTCTTTCTTCTCTCAACTATCTCTGCACTCTCTCCTTCCTTCTGCCCGAGCTCCACACACACACACAAACATATGTACACCCAGACAGCAACCACTCACCACCATCTGGACCTTGTTACCACGAAGCTCAGACTAATGACCCTGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

279

Amino Acids

30.99

Weight (kDa)

5.28

Isoelectric Point (pI)

53.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	503
AccB7I	CCANNNNNTGG	1 cut(s)	791
AciI	CCGC	1 cut(s)	288
AcuI	CTGAAG	1 cut(s)	83
AfaI	GTAC	4 cut(s)	89, 125, 297, 762
AfiI	CCNNNNNNNGG	2 cut(s)	216, 791
AflIII	ACRYGT	1 cut(s)	26
AgeI	ACCGGT	1 cut(s)	502
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	625
AleI	CACNNNNGTG	1 cut(s)	150
AluBI	AGCT	5 cut(s)	241, 340, 736, 812, 833
AluI	AGCT	5 cut(s)	241, 340, 736, 812, 833
Alw21I	GWGCWC	1 cut(s)	738
Alw26I	GTCTC	2 cut(s)	312, 662
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	3 cut(s)	491, 604, 628
ApaI	GGGCCC	1 cut(s)	608
ApeKI	GCWGC	1 cut(s)	221
AsiGI	ACCGGT	1 cut(s)	502
AspS9I	GGNCC	5 cut(s)	500, 604, 605, 629, 794
AsuC2I	CCSGG	1 cut(s)	654
AsuHPI	GGTGA	2 cut(s)	331, 774
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	2 cut(s)	500, 794
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	2 cut(s)	608, 738
Bbv12I	GWGCWC	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	4 cut(s)	109, 281, 649, 796
BciT130I	CCWGG	1 cut(s)	627
BciVI	GTATCC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	312, 662
BfuI	GTATCC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	627, 654
Bme18I	GGWCC	2 cut(s)	500, 794
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	5 cut(s)	500, 604, 605, 629, 794
BmiI	GGNNCC	2 cut(s)	605, 606
BmrFI	CCNGG	2 cut(s)	627, 654
BmsI	GCATC	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	654
Bsa29I	ATCGAT	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	662
BsaJI	CCNNGG	3 cut(s)	462, 599, 625
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 791
Bse118I	RCCGGY	1 cut(s)	502
Bse1I	ACTGG	2 cut(s)	304, 562
BseBI	CCWGG	1 cut(s)	627
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	462, 599, 625
BseGI	GGATG	2 cut(s)	101, 273
BseLI	CCNNNNNNNGG	2 cut(s)	216, 791
BseMII	CTCAG	2 cut(s)	323, 827
BseNI	ACTGG	2 cut(s)	304, 562
BseRI	GAGGAG	4 cut(s)	536, 545, 554, 563
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	694
BshFI	GGCC	3 cut(s)	493, 606, 630
BshTI	ACCGGT	1 cut(s)	502
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	738
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	3 cut(s)	180, 503, 654
BslFI	GGGAC	2 cut(s)	443, 608
BslI	CCNNNNNNNGG	2 cut(s)	216, 791
BsmAI	GTCTC	2 cut(s)	312, 662
BsmFI	GGGAC	2 cut(s)	443, 608
BsnI	GGCC	3 cut(s)	493, 606, 630
Bso31I	GGTCTC	1 cut(s)	662
BsoBI	CYCGRG	1 cut(s)	731
Bsp120I	GGGCCC	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	608, 738
Bsp1407I	TGTACA	2 cut(s)	87, 760
Bsp143I	GATC	2 cut(s)	58, 381
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	3 cut(s)	493, 606, 630
BspCNI	CTCAG	2 cut(s)	322, 826
BspDI	ATCGAT	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	21
BspLI	GGNNCC	2 cut(s)	605, 606
BspQI	GCTCTTC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	662
BsrFI	RCCGGY	1 cut(s)	502
BsrGI	TGTACA	2 cut(s)	87, 760
BsrI	ACTGG	2 cut(s)	304, 562
BssAI	RCCGGY	1 cut(s)	502
BssECI	CCNNGG	3 cut(s)	462, 599, 625
BssMI	GATC	2 cut(s)	58, 381
BssT1I	CCWWGG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	4 cut(s)	94, 187, 331, 349
Bst6I	CTCTTC	1 cut(s)	231
BstAUI	TGTACA	2 cut(s)	87, 760
BstDEI	CTNAG	3 cut(s)	309, 576, 813
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	2 cut(s)	101, 273
BstKTI	GATC	2 cut(s)	61, 384
BstMAI	GTCTC	2 cut(s)	312, 662
BstMBI	GATC	2 cut(s)	58, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	1 cut(s)	30
BstSCI	CCNGG	2 cut(s)	625, 652
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	233
Bsu15I	ATCGAT	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	493, 606, 630
BsuTUI	ATCGAT	1 cut(s)	57
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	101, 273
BtsI	GCAGTG	1 cut(s)	365
BtsIMutI	CAGTG	3 cut(s)	183, 354, 365
CciI	TCATGA	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	502
Cfr13I	GGNCC	5 cut(s)	500, 604, 605, 629, 794
ClaI	ATCGAT	1 cut(s)	57
CpoI	CGGWCCG	1 cut(s)	500
Csp6I	GTAC	4 cut(s)	88, 124, 296, 761
CspAI	ACCGGT	1 cut(s)	502
CspI	CGGWCCG	1 cut(s)	500
CviAII	CATG	2 cut(s)	22, 27
CviQI	GTAC	4 cut(s)	88, 124, 296, 761
DdeI	CTNAG	3 cut(s)	309, 576, 813
DpnI	GATC	2 cut(s)	60, 383
DpnII	GATC	2 cut(s)	58, 381
DraI	TTTAAA	1 cut(s)	253
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Ecl136II	GAGCTC	1 cut(s)	736
Eco130I	CCWWGG	1 cut(s)	599
Eco24I	GRGCYC	2 cut(s)	608, 738
Eco31I	GGTCTC	1 cut(s)	662
Eco47I	GGWCC	2 cut(s)	500, 794
Eco53kI	GAGCTC	1 cut(s)	736
Eco57I	CTGAAG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	731
EcoICRI	GAGCTC	1 cut(s)	736
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	599
EcoT38I	GRGCYC	2 cut(s)	608, 738
ErhI	CCWWGG	1 cut(s)	599
FaeI	CATG	2 cut(s)	25, 30
FalI	AAGNNNNNCTT	2 cut(s)	142, 174
FaqI	GGGAC	2 cut(s)	443, 608
FatI	CATG	2 cut(s)	21, 26
FauNDI	CATATG	1 cut(s)	757
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	88, 260
FriOI	GRGCYC	2 cut(s)	608, 738
Fsp4HI	GCNGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	3 cut(s)	493, 606, 630
HapII	CCGG	3 cut(s)	180, 503, 654
Hin1II	CATG	2 cut(s)	25, 30
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	3 cut(s)	180, 503, 654
HphI	GGTGA	2 cut(s)	331, 774
Hpy166II	GTNNAC	2 cut(s)	90, 763
Hpy188I	TCNGA	6 cut(s)	63, 113, 312, 355, 587, 816
Hpy188III	TCNNGA	3 cut(s)	22, 335, 792
Hpy8I	GTNNAC	2 cut(s)	90, 763
HpyAV	CCTTC	5 cut(s)	435, 647, 683, 730, 734
HpyCH4III	ACNGT	4 cut(s)	94, 187, 331, 349
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	3 cut(s)	309, 576, 813
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	25, 30
Kzo9I	GATC	2 cut(s)	58, 381
LguI	GCTCTTC	1 cut(s)	231
LmnI	GCTCC	2 cut(s)	337, 741
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	4 cut(s)	29, 319, 560, 800
MalI	GATC	2 cut(s)	60, 383
MboI	GATC	2 cut(s)	58, 381
MboII	GAAGA	6 cut(s)	76, 142, 248, 391, 407, 684
MhlI	GDGCHC	2 cut(s)	608, 738
MmeI	TCCRAC	2 cut(s)	169, 333
MnlI	CCTC	8 cut(s)	46, 514, 523, 532, 541, 544, 583, 696
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	3 cut(s)	150, 152, 437
MspI	CCGG	3 cut(s)	180, 503, 654
MspR9I	CCNGG	2 cut(s)	627, 654
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	1 cut(s)	654
NdeI	CATATG	1 cut(s)	757
NdeII	GATC	2 cut(s)	58, 381
NlaIII	CATG	2 cut(s)	25, 30
NlaIV	GGNNCC	2 cut(s)	605, 606
NmuCI	GTSAC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	30
OliI	CACNNNNGTG	1 cut(s)	150
PagI	TCATGA	1 cut(s)	21
PciI	ACATGT	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	791
PinAI	ACCGGT	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	223
PscI	ACATGT	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	2 cut(s)	605, 606
PspOMI	GGGCCC	1 cut(s)	604
PspPI	GGNCC	5 cut(s)	500, 604, 605, 629, 794
RsaI	GTAC	4 cut(s)	89, 125, 297, 762
RsaNI	GTAC	4 cut(s)	88, 124, 296, 761
RseI	CAYNNNNRTG	3 cut(s)	150, 152, 437
Rsr2I	CGGWCCG	1 cut(s)	500
RsrII	CGGWCCG	1 cut(s)	500
SacI	GAGCTC	1 cut(s)	738
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	58, 381
Sau96I	GGNCC	5 cut(s)	500, 604, 605, 629, 794
ScrFI	CCNGG	2 cut(s)	627, 654
SduI	GDGCHC	2 cut(s)	608, 738
SetI	ASST	9 cut(s)	118, 177, 212, 243, 342, 738, 799, 814, 835
SfaNI	GCATC	1 cut(s)	250
SinI	GGWCC	2 cut(s)	500, 794
SmiMI	CAYNNNNRTG	3 cut(s)	150, 152, 437
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
SsiI	CCGC	1 cut(s)	288
SstI	GAGCTC	1 cut(s)	738
StyD4I	CCNGG	2 cut(s)	625, 652
StyI	CCWWGG	1 cut(s)	599
TaaI	ACNGT	4 cut(s)	94, 187, 331, 349
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	57, 393
TatI	WGTACW	3 cut(s)	87, 123, 760
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	3 cut(s)	190, 354, 372
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	17, 416, 421, 585
TspGWI	ACGGA	1 cut(s)	513
TspRI	CASTG	3 cut(s)	190, 354, 372
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	500, 794
XceI	RCATGY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.