Rroxscaffold_3G00262570

lysM domain receptor-like kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003063
Physical Location & Seq
Reverse (-)
56574994 .. 56575555
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262570.1

Sequence Viewer

Length: 384 bp
ATGACATCAAAAGGTGATGTATATGCATTCGGAGTGGTTTTAGGAGAGCTAATAACTGGTCAGCGTGCCATTGTTCGTGACAACCGAGAGCCAAAAAGGATGAAATCACTTGTCTCAGTTTTACTAGAAGTATTCCAAGATAATGATCCAGAGATTGCTTTGGAAGCTAAAATAGATGGTAATTTGAAAGGAAGCTACCCCATGGAAGAAGTCTACAAGATGGGAGAAATAGCAAGATGGTGTTCGAGTGAAGATCCAGTAAATCGGCCAGAGATGCATGAGATTGTACAATCACTCTCCCAAATTTTGATGTCCTCAATAGAATGGGAAGCATCCCTTGGAGGGAAGAGTGAGGTCTTCAGTGGATTATTCAGTGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM Pkinase

Protein Analysis

127

Amino Acids

14.15

Weight (kDa)

4.82

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AclWI GGATC 2 cut(s) 140, 248
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 343
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 3 cut(s) 49, 167, 195
AluI AGCT 3 cut(s) 49, 167, 195
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 2 cut(s) 140, 248
AoxI GGCC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 303
AsuHPI GGTGA 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 349
BccI CCATC 3 cut(s) 170, 214, 231
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 125
BmsI GCATC 2 cut(s) 264, 341
BpiI GAAGAC 1 cut(s) 349
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 201, 337
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 2 cut(s) 61, 257
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 2 cut(s) 201, 337
BseGI GGATG 2 cut(s) 105, 332
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 61, 257
BshFI GGCC 1 cut(s) 268
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 1 cut(s) 268
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 2 cut(s) 145, 253
Bsp19I CCATGG 1 cut(s) 201
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 128
BspPI GGATC 2 cut(s) 140, 248
BsrGI TGTACA 1 cut(s) 286
BsrI ACTGG 2 cut(s) 61, 257
BssECI CCNNGG 2 cut(s) 201, 337
BssMI GATC 2 cut(s) 145, 253
BssT1I CCWWGG 2 cut(s) 201, 337
Bst6I CTCTTC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 286
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 115
BstDSI CCRYGG 1 cut(s) 201
BstF5I GGATG 2 cut(s) 105, 332
BstKTI GATC 2 cut(s) 148, 256
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 2 cut(s) 145, 253
BstMWI GCNNNNNNNGC 2 cut(s) 164, 274
BstV2I GAAGAC 1 cut(s) 349
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 105, 332
BtsIMutI CAGTG 2 cut(s) 367, 379
Cac8I GCNNGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 287
CviAII CATG 2 cut(s) 202, 278
CviJI RGCY 5 cut(s) 49, 91, 167, 195, 268
CviKI_1 RGCY 5 cut(s) 49, 91, 167, 195, 268
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 115
DpnI GATC 2 cut(s) 147, 255
DpnII GATC 2 cut(s) 145, 253
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco130I CCWWGG 2 cut(s) 201, 337
Eco57I CTGAAG 1 cut(s) 343
EcoT14I CCWWGG 2 cut(s) 201, 337
EcoT22I ATGCAT 2 cut(s) 28, 279
ErhI CCWWGG 2 cut(s) 201, 337
FaeI CATG 2 cut(s) 205, 281
FaiI YATR 4 cut(s) 22, 24, 203, 279
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FatI CATG 2 cut(s) 201, 277
FblI GTMKAC 1 cut(s) 213
FokI GGATG 2 cut(s) 112, 319
FspBI CTAG 1 cut(s) 125
HaeIII GGCC 1 cut(s) 268
Hin1II CATG 2 cut(s) 205, 281
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 32
Hpy188III TCNNGA 2 cut(s) 77, 149
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 26, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 274
HpyF3I CTNAG 1 cut(s) 115
Hsp92II CATG 2 cut(s) 205, 281
Kzo9I GATC 2 cut(s) 145, 253
LpnPI CCDG 4 cut(s) 42, 162, 270, 282
LweI GCATC 2 cut(s) 264, 341
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 147, 255
MboI GATC 2 cut(s) 145, 253
MboII GAAGA 4 cut(s) 218, 263, 349, 358
MflI RGATCY 1 cut(s) 253
MluCI AATT 2 cut(s) 181, 303
MnlI CCTC 3 cut(s) 325, 335, 346
Mph1103I ATGCAT 2 cut(s) 28, 279
Mva1269I GAATGC 1 cut(s) 26
MwoI GCNNNNNNNGC 2 cut(s) 164, 274
NcoI CCATGG 1 cut(s) 201
NdeII GATC 2 cut(s) 145, 253
NlaIII CATG 2 cut(s) 205, 281
NmuCI GTSAC 1 cut(s) 77
NsiI ATGCAT 2 cut(s) 28, 279
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 145, 253
SetI ASST 5 cut(s) 16, 51, 169, 197, 357
SfaNI GCATC 2 cut(s) 264, 341
Sse9I AATT 2 cut(s) 181, 303
SspMI CTAG 1 cut(s) 125
StyI CCWWGG 2 cut(s) 201, 337
TaqI TCGA 1 cut(s) 245
TasI AATT 2 cut(s) 181, 303
TatI WGTACW 1 cut(s) 286
TscAI CASTG 2 cut(s) 367, 379
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 116
TspRI CASTG 2 cut(s) 367, 379
XapI RAATTY 1 cut(s) 303
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 2 cut(s) 28, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.