Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Forward (+)

19674376 .. 19677115

Gene Structure 2740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15070.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGAAATGGCTCCTTTAAACCAGAAGTTCCATTTTTTCTCAATTCTCTTCACCATTTTCTTCTATACCAATGTTCTCTCAGGTGGAGTGTACCCTTTTCCTTGCTCCACTGCTCTCCACACCCAGACCTGCAATTCCTCTCTATACCACATCTCAAAAGGCCACCAAATAGAAGAAATAGCCACTTTTTACTCAGTAAACCCATCCAACATCAAGCCAATTGTTCATGACGACCAACACCCAAAAGACTATCTTGTTTCTGTGCCTTGCACTTGTAAGGATGTCAAGGGCACCCAAGTTTACCTCTATGATACAAATTACCTAGTTAAGGAAGGAGACACTGTTGGAAATGTGGTGAGTGAGTTTTACAGTGGGCAGGCAGTGAAAATTGGGGAAGAGCAGCAGCAATTTACTGTGGAAAACATGACTACTTTTCACCTTGTTTGTGGGTGTGTAGAGAAAAAATCACAGGAGGTTGTGACATACACTGTTCAAGATCATGACACCTTATCAGATATTGAAAATCTTCTATCTGCATATGAGAGTGAGATTCAGAAATTGAACAAAAACTTCACTAAGTCCCCTAATTTTATAGATGTTGGATGGGTTTTGTTTGTGCCAATGGAGCTCAATGGACTTCGAGCCCAACAGCAAGGGAAGAGACTCAGTTTGGCTGCAATTATAGGGATAGTGTCAGCTGTTGGGTTTCTTTTGGTGGCCACATTCACCATATTTCTTCTTATAAGATATAGAAAAGGTAAGAACACAGAAGAAGATGTGAACCCAAATGCCAAAAAGGTTTCACTAAAGCAACAGTTTTTCAAAAGGCAAATGGAAGAAACTTTTGAGAATGAAAGGCCAGTTATATATACGATGGAGGAAATCGAGCAGGCTACGAATAACTTTGATGACACCAGGATGATTGGACAGGGCGGATATGGCAGCATATATGCAATTTTCAAAGAAGAAGATCCAGAAGCTGCTTTGGAAGCTCAAATAGACGGTAACATGAAGGGAAGTTACCCTATGGAAGAAGTCTACAAGATGGCGAAAATAGCATGGGGGTGTGCGAGTGAAGATCCAGTAAATAGACCGGAGATGAAAGACATTGTGCAAACACTCTCCCAAATATTGATGTCCTCCATAGAATGGGAAGCATCACTTGGAGGGAAGAGCGAGATCTTCAGTGGCTTACTCATGAGTGGCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

404

Amino Acids

45.51

Weight (kDa)

5.02

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	290
AccB7I	CCANNNNNTGG	1 cut(s)	1149
AccI	GTMKAC	1 cut(s)	1038
AciI	CCGC	1 cut(s)	933
AclWI	GGATC	2 cut(s)	965, 1073
AcoI	YGGCCR	1 cut(s)	717
AcuI	CTGAAG	1 cut(s)	1168
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	328, 1149
AgsI	TTSAA	5 cut(s)	494, 521, 562, 823, 961
AjnI	CCWGG	1 cut(s)	914
AjuI	GAANNNNNNNTTGG	2 cut(s)	1146, 1178
AluBI	AGCT	4 cut(s)	628, 698, 980, 992
AluI	AGCT	4 cut(s)	628, 698, 980, 992
Alw21I	GWGCWC	1 cut(s)	630
Alw26I	GTCTC	2 cut(s)	330, 655
AlwI	GGATC	2 cut(s)	965, 1073
AlwNI	CAGNNNCTG	1 cut(s)	980
AoxI	GGCC	3 cut(s)	160, 717, 857
ApeKI	GCWGC	5 cut(s)	400, 403, 674, 942, 980
Asp700I	GAANNNNTTC	1 cut(s)	525
AsuHPI	GGTGA	4 cut(s)	43, 367, 428, 718
BaeGI	GKGCMC	1 cut(s)	293
BalI	TGGCCA	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	630, 646
BarI	GAAGNNNNNNTAC	2 cut(s)	1004, 1036
Bbv12I	GWGCWC	1 cut(s)	630
BbvI	GCAGC	5 cut(s)	412, 415, 661, 954, 967
BccI	CCATC	4 cut(s)	211, 597, 868, 1039
BciT130I	CCWGG	1 cut(s)	916
BcoDI	GTCTC	2 cut(s)	330, 655
BfaI	CTAG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	1179
BisI	GCNGC	5 cut(s)	401, 404, 675, 943, 981
BlsI	GCNGC	5 cut(s)	402, 405, 676, 944, 982
Bme1390I	CCNGG	1 cut(s)	916
BmiI	GGNNCC	2 cut(s)	12, 292
BmrFI	CCNGG	1 cut(s)	916
BmsI	GCATC	1 cut(s)	1166
BsaWI	WCCGGW	1 cut(s)	1093
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 1149
Bse1I	ACTGG	2 cut(s)	860, 1082
BseBI	CCWGG	1 cut(s)	916
BseGI	GGATG	4 cut(s)	203, 286, 608, 924
BseLI	CCNNNNNNNGG	2 cut(s)	328, 1149
BseMII	CTCAG	3 cut(s)	93, 207, 679
BseNI	ACTGG	2 cut(s)	860, 1082
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	5 cut(s)	412, 415, 661, 954, 967
BshFI	GGCC	3 cut(s)	162, 719, 859
BshNI	GGYRCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	630
BsiSI	CCGG	1 cut(s)	1094
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	328, 1149
BsmAI	GTCTC	2 cut(s)	330, 655
BsmFI	GGGAC	1 cut(s)	565
BsnI	GGCC	3 cut(s)	162, 719, 859
Bsp1286I	GDGCHC	3 cut(s)	293, 630, 646
Bsp143I	GATC	4 cut(s)	496, 970, 1078, 1179
BspACI	CCGC	1 cut(s)	933
BspANI	GGCC	3 cut(s)	162, 719, 859
BspCNI	CTCAG	3 cut(s)	92, 206, 678
BspHI	TCATGA	3 cut(s)	226, 499, 1197
BspLI	GGNNCC	2 cut(s)	12, 292
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	2 cut(s)	965, 1073
BspQI	GCTCTTC	2 cut(s)	390, 1166
BspT107I	GGYRCC	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	860, 1082
BssMI	GATC	4 cut(s)	496, 970, 1078, 1179
Bst2UI	CCWGG	1 cut(s)	916
Bst4CI	ACNGT	6 cut(s)	343, 371, 415, 490, 816, 1004
Bst6I	CTCTTC	4 cut(s)	53, 390, 653, 1166
BstC8I	GCNNGC	2 cut(s)	378, 891
BstDEI	CTNAG	4 cut(s)	79, 193, 576, 665
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	4 cut(s)	203, 286, 608, 924
BstKTI	GATC	4 cut(s)	499, 973, 1081, 1182
BstMAI	GTCTC	2 cut(s)	330, 655
BstMBI	GATC	4 cut(s)	496, 970, 1078, 1179
BstMWI	GCNNNNNNNGC	4 cut(s)	625, 939, 989, 1055
BstNI	CCWGG	1 cut(s)	916
BstSCI	CCNGG	1 cut(s)	914
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	5 cut(s)	412, 415, 661, 954, 967
BstX2I	RGATCY	3 cut(s)	970, 1078, 1179
BstYI	RGATCY	3 cut(s)	970, 1078, 1179
BsuRI	GGCC	3 cut(s)	162, 719, 859
BtsCI	GGATG	4 cut(s)	203, 286, 608, 924
BtsI	GCAGTG	2 cut(s)	108, 387
BtsIMutI	CAGTG	6 cut(s)	108, 339, 376, 387, 486, 1192
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	378, 891
CaiI	CAGNNNCTG	1 cut(s)	980
CciI	TCATGA	3 cut(s)	226, 499, 1197
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	6 cut(s)	227, 424, 500, 1009, 1059, 1198
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	4 cut(s)	79, 193, 576, 665
DpnI	GATC	4 cut(s)	498, 972, 1080, 1181
DpnII	GATC	4 cut(s)	496, 970, 1078, 1179
DraI	TTTAAA	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	4 cut(s)	53, 390, 653, 1166
EarI	CTCTTC	4 cut(s)	53, 390, 653, 1166
EciI	GGCGGA	1 cut(s)	948
Ecl136II	GAGCTC	1 cut(s)	628
Eco24I	GRGCYC	2 cut(s)	630, 646
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	1168
EcoICRI	GAGCTC	1 cut(s)	628
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	914
EcoT38I	GRGCYC	2 cut(s)	630, 646
FaeI	CATG	6 cut(s)	230, 427, 503, 1012, 1062, 1201
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 1146, 1178
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	6 cut(s)	226, 423, 499, 1008, 1058, 1197
FauNDI	CATATG	1 cut(s)	538
FblI	GTMKAC	1 cut(s)	1038
Fnu4HI	GCNGC	5 cut(s)	401, 404, 675, 943, 981
FokI	GGATG	4 cut(s)	190, 293, 615, 931
FriOI	GRGCYC	2 cut(s)	630, 646
Fsp4HI	GCNGC	5 cut(s)	401, 404, 675, 943, 981
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	5 cut(s)	401, 404, 675, 943, 981
HaeIII	GGCC	3 cut(s)	162, 719, 859
HapII	CCGG	1 cut(s)	1094
Hin1II	CATG	6 cut(s)	230, 427, 503, 1012, 1062, 1201
HinfI	GANTC	2 cut(s)	550, 663
HpaII	CCGG	1 cut(s)	1094
HphI	GGTGA	4 cut(s)	43, 367, 428, 718
Hpy166II	GTNNAC	5 cut(s)	91, 199, 301, 781, 1039
Hpy188I	TCNGA	2 cut(s)	514, 555
Hpy188III	TCNNGA	5 cut(s)	227, 494, 500, 974, 1198
Hpy8I	GTNNAC	5 cut(s)	91, 199, 301, 781, 1039
HpyAV	CCTTC	2 cut(s)	326, 1006
HpyCH4III	ACNGT	6 cut(s)	343, 371, 415, 490, 816, 1004
HpyCH4V	TGCA	6 cut(s)	132, 270, 536, 677, 953, 1114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	625, 939, 989, 1055
HpyF3I	CTNAG	4 cut(s)	79, 193, 576, 665
Hsp92II	CATG	6 cut(s)	230, 427, 503, 1012, 1062, 1201
Kzo9I	GATC	4 cut(s)	496, 970, 1078, 1179
LguI	GCTCTTC	2 cut(s)	390, 1166
LmnI	GCTCC	3 cut(s)	16, 110, 625
Lsp1109I	GCAGC	5 cut(s)	412, 415, 661, 954, 967
LweI	GCATC	1 cut(s)	1166
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	478, 1004, 1019
MalI	GATC	4 cut(s)	498, 972, 1080, 1181
MboI	GATC	4 cut(s)	496, 970, 1078, 1179
MfeI	CAATTG	1 cut(s)	219
MflI	RGATCY	3 cut(s)	970, 1078, 1179
MhlI	GDGCHC	3 cut(s)	293, 630, 646
MlsI	TGGCCA	1 cut(s)	719
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	3 cut(s)	231, 325, 580
MnlI	CCTC	6 cut(s)	148, 314, 466, 871, 1150, 1160
Mox20I	TGGCCA	1 cut(s)	719
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	2 cut(s)	17, 327
MslI	CAYNNNNRTG	2 cut(s)	917, 1063
Msp20I	TGGCCA	1 cut(s)	719
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	1094
MspR9I	CCNGG	1 cut(s)	916
MunI	CAATTG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	916
MwoI	GCNNNNNNNGC	4 cut(s)	625, 939, 989, 1055
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	4 cut(s)	496, 970, 1078, 1179
NlaIII	CATG	6 cut(s)	230, 427, 503, 1012, 1062, 1201
NlaIV	GGNNCC	2 cut(s)	12, 292
NmuCI	GTSAC	1 cut(s)	478
PagI	TCATGA	3 cut(s)	226, 499, 1197
PciSI	GCTCTTC	2 cut(s)	390, 1166
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	550
PflMI	CCANNNNNTGG	1 cut(s)	1149
PkrI	GCNGC	5 cut(s)	402, 405, 676, 944, 982
PleI	GAGTC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	657
PsiI	TTATAA	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	630
Psp6I	CCWGG	1 cut(s)	914
PspGI	CCWGG	1 cut(s)	914
PspN4I	GGNNCC	2 cut(s)	12, 292
PstNI	CAGNNNCTG	1 cut(s)	980
PsuI	RGATCY	3 cut(s)	970, 1078, 1179
PvuII	CAGCTG	1 cut(s)	698
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	2 cut(s)	917, 1063
SacI	GAGCTC	1 cut(s)	630
SapI	GCTCTTC	2 cut(s)	390, 1166
SaqAI	TTAA	2 cut(s)	17, 327
SatI	GCNGC	5 cut(s)	401, 404, 675, 943, 981
Sau3AI	GATC	4 cut(s)	496, 970, 1078, 1179
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	1 cut(s)	916
SduI	GDGCHC	3 cut(s)	293, 630, 646
SfaNI	GCATC	1 cut(s)	1166
SmiMI	CAYNNNNRTG	2 cut(s)	917, 1063
SsiI	CCGC	1 cut(s)	933
SspI	AATATT	1 cut(s)	1131
SspMI	CTAG	1 cut(s)	323
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	914
TaaI	ACNGT	6 cut(s)	343, 371, 415, 490, 816, 1004
TaqI	TCGA	2 cut(s)	640, 885
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	2 cut(s)	17, 327
Tru9I	TTAA	2 cut(s)	17, 327
TscAI	CASTG	6 cut(s)	115, 346, 376, 387, 493, 1192
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	5 cut(s)	400, 403, 674, 942, 980
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	4 cut(s)	215, 867, 1025, 1115
TspRI	CASTG	6 cut(s)	115, 346, 376, 387, 493, 1192
Van91I	CCANNNNNTGG	1 cut(s)	1149
XagI	CCTNNNNNAGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	1038
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.