Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450261.1

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1568

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450261.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

atggaaaaaccggtggtttttacatatgaagaaatcttttcctcaacagatggattctctgattcacgtcttctgggaaatggaacttatggttctgtgtattatggcttacttcatgagcaggaagttgctattaaaagaatgactgttacaaaaaccaaagaatttctagcagaagtaaaagttctatgcagggttcatcattcaaatctggtagaattgattggttatgcagcaactgaagatgagctcttcttaatatatgagtacgcccaaaaaggttcacttaaaagccatttgcatgatcctcagaacaagggtcaaacgtcactttcctggatcatgaggctccagattgctcttgatgctgctagaggtcttgagtacatccatgagcacactaaagctcattatgtccaccgggatatcaagacaagcaacatcttgcttgatggtgccttcaggggaaagatttcagattttggattggcaaaacttgttggtaaaacaggtgaaggagaagctacggtaaccaaagttgttggtacatatggttatctggctccagaatacttgagcgatgggcgtgctactacaaaaagtgatatttatgcttttggagttgttctcttcgagattttatcagggaaggaggctgttatacgaactgaaggcacagttacaaaaaatcctgaaagacgctcactggtatccatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031348 GO:0032870 GO:0033993 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140096 GO:1901419 GO:1901421 GO:1901564 GO:1901700 GO:1901701 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

239

Amino Acids

26.64

Weight (kDa)

6.51

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AclWI	GGATC	2 cut(s)	299, 347
AcsI	RAATTY	1 cut(s)	164
AcuI	CTGAAG	3 cut(s)	261, 445, 690
AfaI	GTAC	3 cut(s)	269, 386, 547
AgeI	ACCGGT	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	207
AjiI	CACGTC	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	3 cut(s)	250, 407, 524
AluI	AGCT	3 cut(s)	250, 407, 524
Alw21I	GWGCWC	2 cut(s)	252, 399
AlwI	GGATC	2 cut(s)	299, 347
AlwNI	CAGNNNCTG	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	233, 368
ApoI	RAATTY	1 cut(s)	164
AsiGI	ACCGGT	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	472
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	2 cut(s)	252, 399
BbvI	GCAGC	2 cut(s)	245, 355
BccI	CCATC	3 cut(s)	44, 446, 575
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	422
BfaI	CTAG	2 cut(s)	170, 372
BisI	GCNGC	2 cut(s)	234, 369
BlsI	GCNGC	2 cut(s)	235, 370
Bme1390I	CCNGG	2 cut(s)	337, 422
BmgBI	CACGTC	1 cut(s)	68
BmiI	GGNNCC	3 cut(s)	350, 457, 564
BmrFI	CCNGG	2 cut(s)	337, 422
BmsI	GCATC	1 cut(s)	355
BpiI	GAAGAC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	612, 644
BpmI	CTGGAG	2 cut(s)	335, 549
BpuEI	CTTGAG	2 cut(s)	401, 595
BpuMI	CCSGG	1 cut(s)	422
BsaWI	WCCGGW	1 cut(s)	10
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	711
BseBI	CCWGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	711
BseXI	GCAGC	2 cut(s)	245, 355
BshNI	GGYRCC	1 cut(s)	455
BshTI	ACCGGT	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	252, 399
BsiSI	CCGG	2 cut(s)	11, 421
Bsp1286I	GDGCHC	2 cut(s)	252, 399
Bsp143I	GATC	2 cut(s)	304, 339
BspCNI	CTCAG	1 cut(s)	322
BspHI	TCATGA	2 cut(s)	115, 342
BspLI	GGNNCC	3 cut(s)	350, 457, 564
BspPI	GGATC	2 cut(s)	299, 347
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	455
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	711
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	2 cut(s)	304, 339
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	3 cut(s)	148, 529, 679
Bst6I	CTCTTC	2 cut(s)	257, 635
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	1 cut(s)	309
BstEII	GGTNACC	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	2 cut(s)	307, 342
BstMBI	GATC	2 cut(s)	304, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstNI	CCWGG	1 cut(s)	337
BstPI	GGTNACC	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	335, 420
BstV1I	GCAGC	2 cut(s)	245, 355
BstV2I	GAAGAC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	594
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	704
Cac8I	GCNNGC	1 cut(s)	588
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	2 cut(s)	115, 342
Cfr10I	RCCGGY	1 cut(s)	10
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	3 cut(s)	268, 385, 546
CspAI	ACCGGT	1 cut(s)	10
CviAII	CATG	4 cut(s)	116, 302, 343, 392
CviJI	RGCY	8 cut(s)	108, 250, 294, 349, 407, 524, 563, 656
CviKI_1	RGCY	8 cut(s)	108, 250, 294, 349, 407, 524, 563, 656
CviQI	GTAC	3 cut(s)	268, 385, 546
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	306, 341
DpnII	GATC	2 cut(s)	304, 339
Eam1104I	CTCTTC	2 cut(s)	257, 635
EarI	CTCTTC	2 cut(s)	257, 635
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	427
Eco53kI	GAGCTC	1 cut(s)	250
Eco57I	CTGAAG	3 cut(s)	261, 445, 690
Eco91I	GGTNACC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	250
EcoO65I	GGTNACC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	335
EcoRV	GATATC	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	252
FaeI	CATG	4 cut(s)	119, 305, 346, 395
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FatI	CATG	4 cut(s)	115, 301, 342, 391
FauNDI	CATATG	2 cut(s)	25, 550
Fnu4HI	GCNGC	2 cut(s)	234, 369
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	234, 369
FspBI	CTAG	2 cut(s)	170, 372
GluI	GCNGC	2 cut(s)	234, 369
GsuI	CTGGAG	2 cut(s)	335, 549
HapII	CCGG	2 cut(s)	11, 421
HgaI	GACGC	1 cut(s)	708
Hin1II	CATG	4 cut(s)	119, 305, 346, 395
HinfI	GANTC	2 cut(s)	54, 62
HpaII	CCGG	2 cut(s)	11, 421
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	284, 418
Hpy188I	TCNGA	3 cut(s)	61, 312, 478
Hpy188III	TCNNGA	9 cut(s)	116, 343, 352, 362, 380, 430, 566, 634, 692
Hpy8I	GTNNAC	2 cut(s)	284, 418
HpyAV	CCTTC	4 cut(s)	469, 509, 643, 665
HpyCH4III	ACNGT	3 cut(s)	148, 529, 679
HpyCH4IV	ACGT	2 cut(s)	67, 326
HpyCH4V	TGCA	3 cut(s)	192, 233, 301
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	2 cut(s)	67, 326
Hsp92II	CATG	4 cut(s)	119, 305, 346, 395
Kzo9I	GATC	2 cut(s)	304, 339
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	2 cut(s)	354, 568
Lsp1109I	GCAGC	2 cut(s)	245, 355
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	2 cut(s)	170, 372
MaeII	ACGT	2 cut(s)	67, 326
MaeIII	GTNAC	4 cut(s)	148, 327, 529, 679
MalI	GATC	2 cut(s)	306, 341
MboI	GATC	2 cut(s)	304, 339
MboII	GAAGA	5 cut(s)	41, 62, 244, 254, 622
MhlI	GDGCHC	2 cut(s)	252, 399
MluCI	AATT	2 cut(s)	164, 218
MnlI	CCTC	5 cut(s)	52, 318, 339, 368, 646
MroXI	GAANNNNTTC	1 cut(s)	472
MseI	TTAA	3 cut(s)	135, 257, 288
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	2 cut(s)	11, 421
MspR9I	CCNGG	2 cut(s)	337, 422
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	1 cut(s)	365
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	2 cut(s)	25, 550
NdeII	GATC	2 cut(s)	304, 339
NlaIII	CATG	4 cut(s)	119, 305, 346, 395
NlaIV	GGNNCC	3 cut(s)	350, 457, 564
NmuCI	GTSAC	1 cut(s)	327
PagI	TCATGA	2 cut(s)	115, 342
PciSI	GCTCTTC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	54, 62
PfoI	TCCNGGA	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	235, 370
Psp124BI	GAGCTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	335
PspN4I	GGNNCC	3 cut(s)	350, 457, 564
PstNI	CAGNNNCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	269, 386, 547
RsaNI	GTAC	3 cut(s)	268, 385, 546
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	257
SaqAI	TTAA	3 cut(s)	135, 257, 288
SatI	GCNGC	2 cut(s)	234, 369
Sau3AI	GATC	2 cut(s)	304, 339
ScrFI	CCNGG	2 cut(s)	337, 422
SduI	GDGCHC	2 cut(s)	252, 399
SetI	ASST	8 cut(s)	70, 252, 283, 329, 379, 409, 514, 526
SfaNI	GCATC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	2 cut(s)	380, 574
SmoI	CTYRAG	2 cut(s)	380, 574
Sse9I	AATT	2 cut(s)	164, 218
SspMI	CTAG	2 cut(s)	170, 372
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	2 cut(s)	335, 420
TaaI	ACNGT	3 cut(s)	148, 529, 679
TaiI	ACGT	2 cut(s)	70, 329
TaqI	TCGA	1 cut(s)	633
TasI	AATT	2 cut(s)	164, 218
TatI	WGTACW	1 cut(s)	384
TfiI	GAWTC	2 cut(s)	54, 62
Tru1I	TTAA	3 cut(s)	135, 257, 288
Tru9I	TTAA	3 cut(s)	135, 257, 288
TscAI	CASTG	1 cut(s)	711
TseFI	GTSAC	1 cut(s)	327
TseI	GCWGC	2 cut(s)	233, 368
Tsp45I	GTSAC	1 cut(s)	327
TspDTI	ATGAA	3 cut(s)	42, 104, 188
TspRI	CASTG	1 cut(s)	711
XapI	RAATTY	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	472
XspI	CTAG	2 cut(s)	170, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.