Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002040.1

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Forward (+)

225195 .. 227663

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002040.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1749 bp

atggcttccctgaactttctcttcattctcttcaccattttgtacgcttccgtcctctctgccagtgatagtgttggcgcagagccaattcacatatacccttttacttgctctgcttctcatcacatcccgagctgcaattccaagctgtatcacatttctacaggccatcaaattgaagaaatagcctatttttacaaggtgaatgtatccgagcttgagcccataaaccgtgatcaaagtcaaaaggactatcttgtatctgtgccttgcagttgtaaggacattgatggcacacaaatgtacgtgtatgataccaattatccagttcaatcaggggacacatttgagagagttgcaggcgagttttacagtagccaagccttgaggggggaaggcaatttgagcaccatacatcttgtttgtggctgcgtgaagaaaaagtcgcaggagattgtgacatacacagttcaagagcatgacactttatcaggaattggacatcttctagatgcatacgagtctgaaattgagacatacaatagaaactttactaaagatccgagttttctagatgtaggttgggtgttgtatgtgccgaagaatggacttcgagctaacaagaaaggaaaaagactcaaggtgtctatagtcataggtgtatcgtccgctgtttgttttgttttggtggccgccttcattgtgttccttctaatgagaaataggatctgtaggaacctaggggatgatttgcaccttgtaaactcaagtgcgaagaaacgttcctcgctgaagcaacagttttttaaaaaggaaatggaagaaacttttgagaatgatagacctgttatatatactatggaggagatcaaagaggctacaaataactttgacgataccagaaagattggggagggtggatacggttgtgtttactttgccataataggagaagtaaaagttgcaattaagaatatgagatctaccagaacaaaagaattctttgctgagctcaaggtgttatgcaagatacatcataacaatgtggtggagctgctaggatatgctagtggaagtgaacatctttgtttggtatatgagtttgttcagaatggatctctcaacgaccatcttcatgatccattgttgaaaggtcgccaacctctttcatggactgcaagagcacagatagcactggatactgcaagagggattgaatacattcatgatcacacgaagaaacgctatgtccaccgtgatataaaaacgagtaatattctacttgatgaaggactcagagccaaggtagcagattttgggctagcaaggttagtggaacggtctaatgaagaagatatagttgcaactcgtgtagttggaacacccggttacattcctcctgaatcggtgcgggagctacaaatgacagcaaaaggtgatgtatatgcattcggagtggttataggagagctaataactggtcagcgtgccattgttcgtgacaaccgagagccaaaaaggatgaaatcacttgtctcagttttgttagaagtattccaagataatgatccagagattgctttggaagctaaaatagatggtaatttgaaaggaagctaccccatggaagaagtctacaaggtttgtgcagctgaaacatcatctcttagcattttctatactaaatatataatttgctcaatgctttgcttggcagatgggagaaatagcaagatggtgttcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

582

Amino Acids

65.54

Weight (kDa)

6.31

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1635
AciI	CCGC	3 cut(s)	669, 693, 1411
AclI	AACGTT	1 cut(s)	781
AclWI	GGATC	5 cut(s)	554, 734, 1123, 1133, 1562
AcoI	YGGCCR	1 cut(s)	690
AcsI	RAATTY	1 cut(s)	998
AcuI	CTGAAG	1 cut(s)	812
AfaI	GTAC	2 cut(s)	44, 305
AfiI	CCNNNNNNNGG	2 cut(s)	390, 605
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	6 cut(s)	179, 332, 473, 1150, 1217, 1609
Alw21I	GWGCWC	3 cut(s)	410, 1014, 1186
Alw26I	GTCTC	2 cut(s)	527, 1540
AlwI	GGATC	5 cut(s)	554, 734, 1123, 1133, 1562
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	2 cut(s)	166, 690
ApeKI	GCWGC	4 cut(s)	135, 429, 1054, 1649
ApoI	RAATTY	1 cut(s)	998
Asp700I	GAANNNNTTC	1 cut(s)	1221
AspA2I	CCTAGG	1 cut(s)	739
AspLEI	GCGC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	1386
AsuHPI	GGTGA	3 cut(s)	25, 214, 1448
AsuNHI	GCTAGC	1 cut(s)	1321
AvaI	CYCGRG	1 cut(s)	130
AvrII	CCTAGG	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	913, 946
BanII	GRGCYC	2 cut(s)	225, 1014
BauI	CACGAG	1 cut(s)	1368
Bbv12I	GWGCWC	3 cut(s)	410, 1014, 1186
BbvI	GCAGC	4 cut(s)	122, 416, 1041, 1661
BccI	CCATC	6 cut(s)	177, 284, 1137, 1592, 1712, 1729
BciVI	GTATCC	3 cut(s)	220, 914, 1192
BclI	TGATCA	2 cut(s)	235, 1228
BcnI	CCSGG	1 cut(s)	1386
BcoDI	GTCTC	2 cut(s)	527, 1540
BfaI	CTAG	6 cut(s)	509, 572, 740, 1058, 1068, 1322
BfmI	CTRYAG	3 cut(s)	162, 648, 730
BfuI	GTATCC	3 cut(s)	220, 914, 1192
BglII	AGATCT	1 cut(s)	980
BisI	GCNGC	5 cut(s)	136, 430, 693, 1055, 1650
BlnI	CCTAGG	1 cut(s)	739
BlpI	GCTNAGC	1 cut(s)	1008
BlsI	GCNGC	5 cut(s)	137, 431, 694, 1056, 1651
Bme1390I	CCNGG	1 cut(s)	1386
BmeT110I	CYCGRG	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	1 cut(s)	1386
BmsI	GCATC	1 cut(s)	502
BmtI	GCTAGC	1 cut(s)	1325
Bpu1102I	GCTNAGC	1 cut(s)	1008
BpuEI	CTTGAG	5 cut(s)	239, 406, 623, 751, 998
BpuMI	CCSGG	1 cut(s)	1386
BsaAI	YACGTR	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	1566
BsaJI	CCNNGG	3 cut(s)	739, 1302, 1623
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 605
Bse1I	ACTGG	4 cut(s)	63, 326, 1200, 1483
Bse8I	GATNNNNATC	1 cut(s)	1566
BseDI	CCNNGG	3 cut(s)	739, 1302, 1623
BseGI	GGATG	3 cut(s)	126, 751, 1527
BseJI	GATNNNNATC	1 cut(s)	1566
BseLI	CCNNNNNNNGG	2 cut(s)	390, 605
BseMII	CTCAG	3 cut(s)	999, 1309, 1551
BseNI	ACTGG	4 cut(s)	63, 326, 1200, 1483
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	4 cut(s)	122, 416, 1041, 1661
BsgI	GTGCAG	1 cut(s)	1668
BshFI	GGCC	2 cut(s)	168, 692
BsiHKAI	GWGCWC	3 cut(s)	410, 1014, 1186
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	1386
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	390, 605
BsmAI	GTCTC	2 cut(s)	527, 1540
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	1 cut(s)	1448
BsnI	GGCC	2 cut(s)	168, 692
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	4 cut(s)	225, 410, 1014, 1186
Bsp143I	GATC	9 cut(s)	235, 559, 726, 867, 980, 1115, 1138, 1228, 1567
Bsp1720I	GCTNAGC	1 cut(s)	1008
Bsp19I	CCATGG	1 cut(s)	1623
BspACI	CCGC	3 cut(s)	669, 693, 1411
BspANI	GGCC	2 cut(s)	168, 692
BspCNI	CTCAG	3 cut(s)	1000, 1308, 1550
BspHI	TCATGA	2 cut(s)	1135, 1225
BspLI	GGNNCC	1 cut(s)	737
BspOI	GCTAGC	1 cut(s)	1325
BspPI	GGATC	5 cut(s)	554, 734, 1123, 1133, 1562
BsrI	ACTGG	4 cut(s)	63, 326, 1200, 1483
BssECI	CCNNGG	3 cut(s)	739, 1302, 1623
BssMI	GATC	9 cut(s)	235, 559, 726, 867, 980, 1115, 1138, 1228, 1567
BssSI	CACGAG	1 cut(s)	1368
BssT1I	CCWWGG	3 cut(s)	739, 1302, 1623
Bst2BI	CACGAG	1 cut(s)	1368
Bst4CI	ACNGT	7 cut(s)	233, 374, 469, 801, 926, 1256, 1341
Bst6I	CTCTTC	2 cut(s)	26, 35
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	3 cut(s)	361, 1323, 1488
BstDEI	CTNAG	4 cut(s)	1008, 1295, 1537, 1667
BstDSI	CCRYGG	1 cut(s)	1623
BstF5I	GGATG	3 cut(s)	126, 751, 1527
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	9 cut(s)	238, 562, 729, 870, 983, 1118, 1141, 1231, 1570
BstMAI	GTCTC	2 cut(s)	527, 1540
BstMBI	GATC	9 cut(s)	235, 559, 726, 867, 980, 1115, 1138, 1228, 1567
BstMWI	GCNNNNNNNGC	4 cut(s)	405, 1190, 1307, 1586
BstSCI	CCNGG	1 cut(s)	1384
BstSFI	CTRYAG	3 cut(s)	162, 648, 730
BstV1I	GCAGC	4 cut(s)	122, 416, 1041, 1661
BstX2I	RGATCY	4 cut(s)	559, 726, 980, 1115
BstYI	RGATCY	4 cut(s)	559, 726, 980, 1115
BsuI	GTATCC	3 cut(s)	220, 914, 1192
BsuRI	GGCC	2 cut(s)	168, 692
BtgI	CCRYGG	1 cut(s)	1623
BtsCI	GGATG	3 cut(s)	126, 751, 1527
BtsIMutI	CAGTG	2 cut(s)	70, 1193
Cac8I	GCNNGC	3 cut(s)	361, 1323, 1488
CciI	TCATGA	2 cut(s)	1135, 1225
CfoI	GCGC	1 cut(s)	80
Csp6I	GTAC	2 cut(s)	43, 304
CspCI	CAANNNNNGTGG	2 cut(s)	1314, 1349
CviAII	CATG	5 cut(s)	479, 1136, 1170, 1226, 1624
CviQI	GTAC	2 cut(s)	43, 304
DdeI	CTNAG	4 cut(s)	1008, 1295, 1537, 1667
DpnI	GATC	9 cut(s)	237, 561, 728, 869, 982, 1117, 1140, 1230, 1569
DpnII	GATC	9 cut(s)	235, 559, 726, 867, 980, 1115, 1138, 1228, 1567
DraI	TTTAAA	1 cut(s)	808
EaeI	YGGCCR	1 cut(s)	690
Eam1104I	CTCTTC	2 cut(s)	26, 35
EarI	CTCTTC	2 cut(s)	26, 35
Ecl136II	GAGCTC	1 cut(s)	1012
Eco130I	CCWWGG	3 cut(s)	739, 1302, 1623
Eco24I	GRGCYC	2 cut(s)	225, 1014
Eco53kI	GAGCTC	1 cut(s)	1012
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	1012
EcoRI	GAATTC	1 cut(s)	998
EcoT14I	CCWWGG	3 cut(s)	739, 1302, 1623
EcoT22I	ATGCAT	2 cut(s)	517, 1450
EcoT38I	GRGCYC	2 cut(s)	225, 1014
ErhI	CCWWGG	3 cut(s)	739, 1302, 1623
FaeI	CATG	5 cut(s)	482, 1139, 1173, 1229, 1627
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	5 cut(s)	478, 1135, 1169, 1225, 1623
FauI	CCCGC	1 cut(s)	1404
FbaI	TGATCA	2 cut(s)	235, 1228
FblI	GTMKAC	1 cut(s)	1635
Fnu4HI	GCNGC	5 cut(s)	136, 430, 693, 1055, 1650
FokI	GGATG	3 cut(s)	113, 758, 1534
FriOI	GRGCYC	2 cut(s)	225, 1014
Fsp4HI	GCNGC	5 cut(s)	136, 430, 693, 1055, 1650
FspBI	CTAG	6 cut(s)	509, 572, 740, 1058, 1068, 1322
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	5 cut(s)	136, 430, 693, 1055, 1650
HaeIII	GGCC	2 cut(s)	168, 692
HapII	CCGG	1 cut(s)	1386
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	5 cut(s)	482, 1139, 1173, 1229, 1627
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	4 cut(s)	521, 636, 1293, 1403
HpaII	CCGG	1 cut(s)	1386
HphI	GGTGA	3 cut(s)	25, 214, 1448
Hpy166II	GTNNAC	5 cut(s)	763, 934, 1079, 1252, 1636
Hpy188I	TCNGA	6 cut(s)	214, 526, 564, 1110, 1298, 1454
Hpy8I	GTNNAC	5 cut(s)	763, 934, 1079, 1252, 1636
HpyAV	CCTTC	4 cut(s)	389, 706, 719, 1283
HpyCH4III	ACNGT	7 cut(s)	233, 374, 469, 801, 926, 1256, 1341
HpyCH4IV	ACGT	2 cut(s)	306, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	405, 1190, 1307, 1586
HpyF3I	CTNAG	4 cut(s)	1008, 1295, 1537, 1667
HpySE526I	ACGT	2 cut(s)	306, 781
Hsp92II	CATG	5 cut(s)	482, 1139, 1173, 1229, 1627
HspAI	GCGC	1 cut(s)	78
Ksp22I	TGATCA	2 cut(s)	235, 1228
Kzo9I	GATC	9 cut(s)	235, 559, 726, 867, 980, 1115, 1138, 1228, 1567
LmnI	GCTCC	2 cut(s)	1051, 1414
Lsp1109I	GCAGC	4 cut(s)	122, 416, 1041, 1661
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	6 cut(s)	509, 572, 740, 1058, 1068, 1322
MaeII	ACGT	2 cut(s)	306, 781
MaeIII	GTNAC	3 cut(s)	457, 1388, 1499
MalI	GATC	9 cut(s)	237, 561, 728, 869, 982, 1117, 1140, 1230, 1569
MboI	GATC	9 cut(s)	235, 559, 726, 867, 980, 1115, 1138, 1228, 1567
MflI	RGATCY	4 cut(s)	559, 726, 980, 1115
MhlI	GDGCHC	4 cut(s)	225, 410, 1014, 1186
MlyI	GAGTC	3 cut(s)	530, 630, 1287
MmeI	TCCRAC	1 cut(s)	1357
MnlI	CCTC	9 cut(s)	65, 381, 796, 856, 868, 907, 1173, 1202, 1407
Mph1103I	ATGCAT	2 cut(s)	517, 1450
MroXI	GAANNNNTTC	1 cut(s)	1221
MseI	TTAA	2 cut(s)	807, 969
MslI	CAYNNNNRTG	3 cut(s)	299, 1041, 1134
MspA1I	CMGCKG	2 cut(s)	671, 1652
MspI	CCGG	1 cut(s)	1386
MspR9I	CCNGG	1 cut(s)	1386
Mva1269I	GAATGC	1 cut(s)	1448
MwoI	GCNNNNNNNGC	4 cut(s)	405, 1190, 1307, 1586
NciI	CCSGG	1 cut(s)	1386
NcoI	CCATGG	1 cut(s)	1623
NdeII	GATC	9 cut(s)	235, 559, 726, 867, 980, 1115, 1138, 1228, 1567
NheI	GCTAGC	1 cut(s)	1321
NlaIII	CATG	5 cut(s)	482, 1139, 1173, 1229, 1627
NlaIV	GGNNCC	1 cut(s)	737
NmuCI	GTSAC	2 cut(s)	457, 1499
NsiI	ATGCAT	2 cut(s)	517, 1450
PagI	TCATGA	2 cut(s)	1135, 1225
PcsI	WCGNNNNNNNCGW	1 cut(s)	1504
PctI	GAATGC	1 cut(s)	1448
PdmI	GAANNNNTTC	1 cut(s)	1221
PfeI	GAWTC	1 cut(s)	1403
PkrI	GCNGC	5 cut(s)	137, 431, 694, 1056, 1651
PleI	GAGTC	3 cut(s)	529, 630, 1287
PpsI	GAGTC	3 cut(s)	529, 630, 1287
Ppu21I	YACGTR	1 cut(s)	307
Psp124BI	GAGCTC	1 cut(s)	1014
Psp1406I	AACGTT	1 cut(s)	781
PspN4I	GGNNCC	1 cut(s)	737
PsuI	RGATCY	4 cut(s)	559, 726, 980, 1115
PvuII	CAGCTG	1 cut(s)	1652
RsaI	GTAC	2 cut(s)	44, 305
RsaNI	GTAC	2 cut(s)	43, 304
RseI	CAYNNNNRTG	3 cut(s)	299, 1041, 1134
SacI	GAGCTC	1 cut(s)	1014
SaqAI	TTAA	2 cut(s)	807, 969
SatI	GCNGC	5 cut(s)	136, 430, 693, 1055, 1650
Sau3AI	GATC	9 cut(s)	235, 559, 726, 867, 980, 1115, 1138, 1228, 1567
SchI	GAGTC	3 cut(s)	530, 630, 1287
ScrFI	CCNGG	1 cut(s)	1386
SduI	GDGCHC	4 cut(s)	225, 410, 1014, 1186
SfaNI	GCATC	1 cut(s)	502
SfcI	CTRYAG	3 cut(s)	162, 648, 730
SmiMI	CAYNNNNRTG	3 cut(s)	299, 1041, 1134
SmlI	CTYRAG	5 cut(s)	218, 385, 638, 766, 1013
SmoI	CTYRAG	5 cut(s)	218, 385, 638, 766, 1013
SsiI	CCGC	3 cut(s)	669, 693, 1411
SspI	AATATT	1 cut(s)	1276
SspMI	CTAG	6 cut(s)	509, 572, 740, 1058, 1068, 1322
SstI	GAGCTC	1 cut(s)	1014
StyD4I	CCNGG	1 cut(s)	1384
StyI	CCWWGG	3 cut(s)	739, 1302, 1623
TaaI	ACNGT	7 cut(s)	233, 374, 469, 801, 926, 1256, 1341
TaiI	ACGT	2 cut(s)	309, 784
TaqI	TCGA	2 cut(s)	613, 1743
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	1 cut(s)	1403
Tru1I	TTAA	2 cut(s)	807, 969
Tru9I	TTAA	2 cut(s)	807, 969
TscAI	CASTG	2 cut(s)	70, 1200
TseFI	GTSAC	2 cut(s)	457, 1499
TseI	GCWGC	4 cut(s)	135, 429, 1054, 1649
Tsp45I	GTSAC	2 cut(s)	457, 1499
TspDTI	ATGAA	8 cut(s)	13, 688, 1124, 1158, 1214, 1302, 1362, 1538
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	2 cut(s)	70, 1200
XapI	RAATTY	1 cut(s)	998
XbaI	TCTAGA	2 cut(s)	508, 571
XmaJI	CCTAGG	1 cut(s)	739
XmiI	GTMKAC	1 cut(s)	1635
XmnI	GAANNNNTTC	1 cut(s)	1221
XspI	CTAG	6 cut(s)	509, 572, 740, 1058, 1068, 1322
Zsp2I	ATGCAT	2 cut(s)	517, 1450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.