Prupe.5G168000_v2.0.a1

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
14485094 .. 14488107
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G168000.1

Sequence Viewer

Length: 1866 bp
ATGGAAATGGCTTGTTTAAACCAAAAACAGCACCTCCTCTTCTTGGTTCTCTTCACTACTATCTTCTCCACTCATGTTCTCTCAGACAGTGTTGGCATAAGCTCAACCCGTCTGTACCCTTTTGCTTGCTCTGATTCTGATCAAATCCAGAGCTGCAATTCCTACCTATATCACATCTCAAAAGGCCATCAAATAGAGGAAATAGCCACTTTTTACTCTGTCAATTCATCCAGCATCAAGCCTATAGTTCATGGCACCCAACACAAACAAGACTATCTTGTATCTGTGCCTTGCACTTGCAAAGACATCAAAGGCACCAAAACTTACCTCTATGACACCAGTTACCTAGTTAAACAAGGAGACACCCTTGAGAATGTTGTTAGTGAGTTTTACAGTGGGCAGGCAATGATAGTTGGAGCAGAGGAGAAGCCATTTGCTGGTGTTGGCAATATGACAACTATTCTCCTTGTTTGTGGGTGCGTAGAGAGATCTTCACAGGAGGTTGTGACATACACAGTTCAAGACCATGACACTTTGATAGGAATTGAACAACTTCTATCTGCATATGAGAGTGAAATTCAGAATCTGAACATAAACCTCACTCAAACCCCAAATTTTATAGATGTTGGTTGGGTTTTGTTTGTGCCAATGGAGCTGAATGGACTTCAACCAAAAAGGCAAGGAAAGAGACTCAGTTTGCCTACAATTATAGGCGTAGTGTCAGCTGTTGGTTTTCTATTTGTGGCCACATTCATCATATTCCTTCTCATCAGATACAGAAAAGGAAGGAACAGAGAAGAAGATCAAAAATCTGTTGTAAACCCAAGTGCCAAGAAAGGTTTCTCACTGAAGCAACAGTTCTTCAAAAGGCAAATGGAAGAAACTTTTGAGAATGAAAGACCAGTTATATATAGCATGGAGCAAATCGAGATGGCTACAAGTAACTTTGATGAAACCAGGAAGATTGGGGAGGGTGGATATGGCAGCGTTTACTTCGGAATATTAGGAGAACTGGAAGTTGCAATTAAGAAGATGAGATCTAGCAGAACAAAGGAGTTCTTTGCTGAGCTCAAGGTTTTATGCAAGATACATCACAACAATGTGGTGGAGCTGCTGGGATATGCTAGTGGAAGTGACCATCTATGTTTGGTTTATGAGTTTCTACAGAATGGCTCCCTCAATGACCATCTTCATGACCCATTGCTGAAAGGAAACCAACCTCTTTCATGGACAGCAAGAGCACAAATAGCACTGGATACAGCAAGAGGAATTGAATACATTCATGACCACACGAAGGCGCGCTATGTGCACCGGGATATAAAAACCAGTAACATTCTACTTGATCAAGGACTCAGAGCAAAGGTTGCAGATTTTGGCCTAGCAAGGTTAGTAGAACGGTCAAGCGAAGAAGATATGGTAGCGACACGCGTGGTTGGAACACCCGGTTACATTCCTCCAGAATCTGTTCGTGAGCTACAAATGACATCGAAAACTGATGTTTATGCGTTCGGAGTGGTGGTAGCAGAGCTAATAACGGGTCAGCGTGCGATTGTTCGTGACAACAGAGAACCAAAAAGAATGAAGTCACTCAGCTCAGTTCTATATGCAGTGTTCCAAGAAAAAGATCCAGAAGCTGCATTGGAAGCTAAAGTAGATGGTAACATGAAAGGAAGCTACCCTATCGAAGAAGTATACAAGATGGCAGAAATAGCAAGGCGGTGTTCGAGTGAAGATCCAGTAGATAGACCAGAGATGAGAGACATTGTGCAAACGCTCTCCCAAATATTGGTGTGCTCAATAGAATGGGAAGCATCACTTGGAGGGAAGAGCCAAGTCTTCAGTGGGTTAATTATGAGTGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

622

Amino Acids

69.73

Weight (kDa)

5.99

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 254, 314
AccB7I CCANNNNNTGG 2 cut(s) 437, 1786
AccI GTMKAC 1 cut(s) 1692
AccII CGCG 2 cut(s) 1300, 1428
AciI CCGC 1 cut(s) 1717
AclWI GGATC 2 cut(s) 1619, 1727
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 2 cut(s) 576, 613
AcuI CTGAAG 2 cut(s) 869, 1822
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 4 cut(s) 43, 437, 1294, 1786
AflIII ACRYGT 1 cut(s) 1426
AgsI TTSAA 5 cut(s) 521, 548, 668, 865, 1274
AjnI CCWGG 1 cut(s) 956
AjuI GAANNNNNNNTTGG 4 cut(s) 824, 856, 1800, 1832
Alw21I GWGCWC 4 cut(s) 1071, 1243, 1311, 1796
Alw26I GTCTC 3 cut(s) 354, 682, 1752
Alw44I GTGCAC 1 cut(s) 1307
AlwI GGATC 2 cut(s) 1619, 1727
AlwNI CAGNNNCTG 3 cut(s) 586, 1463, 1634
AoxI GGCC 3 cut(s) 184, 744, 1375
ApaLI GTGCAC 1 cut(s) 1307
ApeKI GCWGC 4 cut(s) 153, 984, 1111, 1634
ApoI RAATTY 2 cut(s) 576, 613
Asp700I GAANNNNTTC 4 cut(s) 552, 839, 1278, 1464
AspLEI GCGC 2 cut(s) 1300, 1302
AsuC2I CCSGG 2 cut(s) 1313, 1443
BaeGI GKGCMC 1 cut(s) 1311
BalI TGGCCA 1 cut(s) 746
BanI GGYRCC 2 cut(s) 254, 314
BanII GRGCYC 1 cut(s) 1071
BbsI GAAGAC 1 cut(s) 1828
Bbv12I GWGCWC 4 cut(s) 1071, 1243, 1311, 1796
BbvI GCAGC 4 cut(s) 140, 996, 1098, 1621
BccI CCATC 6 cut(s) 195, 925, 1146, 1194, 1649, 1693
BciT130I CCWGG 1 cut(s) 958
BciVI GTATCC 1 cut(s) 1249
BclI TGATCA 2 cut(s) 139, 1342
BcnI CCSGG 2 cut(s) 1313, 1443
BcoDI GTCTC 3 cut(s) 354, 682, 1752
BfaI CTAG 4 cut(s) 347, 1041, 1125, 1379
BfmI CTRYAG 2 cut(s) 243, 1163
BfuI GTATCC 1 cut(s) 1249
BglII AGATCT 2 cut(s) 488, 1037
BisI GCNGC 4 cut(s) 154, 985, 1112, 1635
BlpI GCTNAGC 1 cut(s) 1065
BlsI GCNGC 4 cut(s) 155, 986, 1113, 1636
Bme1390I CCNGG 3 cut(s) 958, 1313, 1443
BmiI GGNNCC 3 cut(s) 256, 316, 1174
BmrFI CCNGG 3 cut(s) 958, 1313, 1443
BmsI GCATC 2 cut(s) 243, 1820
BpiI GAAGAC 1 cut(s) 1828
BpmI CTGGAG 1 cut(s) 1440
Bpu1102I GCTNAGC 1 cut(s) 1065
BpuEI CTTGAG 2 cut(s) 389, 1055
BpuMI CCSGG 2 cut(s) 1313, 1443
BsaBI GATNNNNATC 1 cut(s) 138
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 1503, 1533
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 437, 1294, 1786
Bse1I ACTGG 6 cut(s) 339, 902, 1017, 1257, 1326, 1736
Bse3DI GCAATG 2 cut(s) 411, 1199
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 958
BseGI GGATG 1 cut(s) 227
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 4 cut(s) 43, 437, 1294, 1786
BseMI GCAATG 2 cut(s) 411, 1199
BseMII CTCAG 6 cut(s) 96, 706, 1056, 1366, 1603, 1608
BseNI ACTGG 6 cut(s) 339, 902, 1017, 1257, 1326, 1736
BsePI GCGCGC 1 cut(s) 1298
BseRI GAGGAG 2 cut(s) 26, 437
BseSI GKGCMC 1 cut(s) 1311
BseXI GCAGC 4 cut(s) 140, 996, 1098, 1621
BseYI CCCAGC 1 cut(s) 1114
Bsh1236I CGCG 2 cut(s) 1300, 1428
BshFI GGCC 3 cut(s) 186, 746, 1377
BshNI GGYRCC 2 cut(s) 254, 314
BsiHKAI GWGCWC 4 cut(s) 1071, 1243, 1311, 1796
BsiSI CCGG 2 cut(s) 1312, 1443
BslI CCNNNNNNNGG 4 cut(s) 43, 437, 1294, 1786
BsmAI GTCTC 3 cut(s) 354, 682, 1752
BsnI GGCC 3 cut(s) 186, 746, 1377
Bsp1286I GDGCHC 4 cut(s) 1071, 1243, 1311, 1796
Bsp143I GATC 7 cut(s) 139, 488, 802, 1037, 1342, 1624, 1732
Bsp1720I GCTNAGC 1 cut(s) 1065
BspACI CCGC 1 cut(s) 1717
BspANI GGCC 3 cut(s) 186, 746, 1377
BspCNI CTCAG 6 cut(s) 95, 705, 1057, 1365, 1602, 1607
BspFNI CGCG 2 cut(s) 1300, 1428
BspHI TCATGA 2 cut(s) 1192, 1282
BspLI GGNNCC 3 cut(s) 256, 316, 1174
BspPI GGATC 2 cut(s) 1619, 1727
BspQI GCTCTTC 1 cut(s) 1820
BspT107I GGYRCC 2 cut(s) 254, 314
BsrDI GCAATG 2 cut(s) 411, 1199
BsrI ACTGG 6 cut(s) 339, 902, 1017, 1257, 1326, 1736
BssHII GCGCGC 1 cut(s) 1298
BssMI GATC 7 cut(s) 139, 488, 802, 1037, 1342, 1624, 1732
BssNAI GTATAC 1 cut(s) 1693
Bst1107I GTATAC 1 cut(s) 1693
Bst2UI CCWGG 1 cut(s) 958
Bst4CI ACNGT 5 cut(s) 89, 395, 517, 858, 1398
Bst6I CTCTTC 3 cut(s) 44, 56, 1820
BstAPI GCANNNNNTGC 1 cut(s) 1364
BstC8I GCNNGC 4 cut(s) 127, 402, 1300, 1545
BstDEI CTNAG 6 cut(s) 82, 692, 1065, 1352, 1589, 1594
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 2 cut(s) 1300, 1428
BstHHI GCGC 2 cut(s) 1300, 1302
BstKTI GATC 7 cut(s) 142, 491, 805, 1040, 1345, 1627, 1735
BstMAI GTCTC 3 cut(s) 354, 682, 1752
BstMBI GATC 7 cut(s) 139, 488, 802, 1037, 1342, 1624, 1732
BstMWI GCNNNNNNNGC 6 cut(s) 652, 1247, 1306, 1364, 1643, 1709
BstNI CCWGG 1 cut(s) 958
BstSCI CCNGG 3 cut(s) 956, 1311, 1441
BstSFI CTRYAG 2 cut(s) 243, 1163
BstSLI GKGCMC 1 cut(s) 1311
BstUI CGCG 2 cut(s) 1300, 1428
BstV1I GCAGC 4 cut(s) 140, 996, 1098, 1621
BstV2I GAAGAC 1 cut(s) 1828
BstX2I RGATCY 4 cut(s) 488, 1037, 1624, 1732
BstYI RGATCY 4 cut(s) 488, 1037, 1624, 1732
BstZ17I GTATAC 1 cut(s) 1693
BsuI GTATCC 1 cut(s) 1249
BsuRI GGCC 3 cut(s) 186, 746, 1377
BtsCI GGATG 1 cut(s) 227
BtsI GCAGTG 1 cut(s) 1614
BtsIMutI CAGTG 6 cut(s) 94, 400, 845, 1250, 1614, 1846
Cac8I GCNNGC 4 cut(s) 127, 402, 1300, 1545
CaiI CAGNNNCTG 3 cut(s) 586, 1463, 1634
CciI TCATGA 2 cut(s) 1192, 1282
CfoI GCGC 2 cut(s) 1300, 1302
Csp6I GTAC 1 cut(s) 115
CviAII CATG 8 cut(s) 74, 251, 527, 916, 1193, 1227, 1283, 1663
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 6 cut(s) 82, 692, 1065, 1352, 1589, 1594
DpnI GATC 7 cut(s) 141, 490, 804, 1039, 1344, 1626, 1734
DpnII GATC 7 cut(s) 139, 488, 802, 1037, 1342, 1624, 1732
DraI TTTAAA 1 cut(s) 18
EaeI YGGCCR 1 cut(s) 744
Eam1104I CTCTTC 3 cut(s) 44, 56, 1820
EarI CTCTTC 3 cut(s) 44, 56, 1820
Ecl136II GAGCTC 1 cut(s) 1069
Eco24I GRGCYC 1 cut(s) 1071
Eco53kI GAGCTC 1 cut(s) 1069
Eco57I CTGAAG 2 cut(s) 869, 1822
EcoICRI GAGCTC 1 cut(s) 1069
EcoRII CCWGG 1 cut(s) 956
EcoT38I GRGCYC 1 cut(s) 1071
FaeI CATG 8 cut(s) 77, 254, 530, 919, 1196, 1230, 1286, 1666
FalI AAGNNNNNCTT 6 cut(s) 261, 293, 1043, 1075, 1800, 1832
FatI CATG 8 cut(s) 73, 250, 526, 915, 1192, 1226, 1282, 1662
FauNDI CATATG 1 cut(s) 565
FbaI TGATCA 2 cut(s) 139, 1342
FblI GTMKAC 1 cut(s) 1692
Fnu4HI GCNGC 4 cut(s) 154, 985, 1112, 1635
FokI GGATG 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 1071
Fsp4HI GCNGC 4 cut(s) 154, 985, 1112, 1635
FspBI CTAG 4 cut(s) 347, 1041, 1125, 1379
GlaI GCGC 2 cut(s) 1299, 1301
GluI GCNGC 4 cut(s) 154, 985, 1112, 1635
GsaI CCCAGC 1 cut(s) 1118
GsuI CTGGAG 1 cut(s) 1440
HaeIII GGCC 3 cut(s) 186, 746, 1377
HapII CCGG 2 cut(s) 1312, 1443
HhaI GCGC 2 cut(s) 1300, 1302
Hin1II CATG 8 cut(s) 77, 254, 530, 919, 1196, 1230, 1286, 1666
Hin6I GCGC 2 cut(s) 1298, 1300
HinP1I GCGC 2 cut(s) 1298, 1300
HinfI GANTC 5 cut(s) 134, 583, 690, 1350, 1460
HpaII CCGG 2 cut(s) 1312, 1443
Hpy166II GTNNAC 4 cut(s) 820, 991, 1309, 1693
Hpy188I TCNGA 9 cut(s) 85, 133, 139, 582, 588, 773, 998, 1355, 1511
Hpy188III TCNNGA 9 cut(s) 148, 521, 928, 1193, 1283, 1457, 1469, 1556, 1628
Hpy8I GTNNAC 4 cut(s) 820, 991, 1309, 1693
HpyAV CCTTC 3 cut(s) 773, 780, 1288
HpyCH4III ACNGT 5 cut(s) 89, 395, 517, 858, 1398
HpyF10VI GCNNNNNNNGC 6 cut(s) 652, 1247, 1306, 1364, 1643, 1709
HpyF3I CTNAG 6 cut(s) 82, 692, 1065, 1352, 1589, 1594
Hsp92II CATG 8 cut(s) 77, 254, 530, 919, 1196, 1230, 1286, 1666
HspAI GCGC 2 cut(s) 1298, 1300
Ksp22I TGATCA 2 cut(s) 139, 1342
Kzo9I GATC 7 cut(s) 139, 488, 802, 1037, 1342, 1624, 1732
LguI GCTCTTC 1 cut(s) 1820
LmnI GCTCC 5 cut(s) 416, 652, 919, 1108, 1178
Lsp1109I GCAGC 4 cut(s) 140, 996, 1098, 1621
LweI GCATC 2 cut(s) 243, 1820
MaeI CTAG 4 cut(s) 347, 1041, 1125, 1379
MaeIII GTNAC 9 cut(s) 341, 505, 941, 1133, 1328, 1445, 1556, 1584, 1658
MalI GATC 7 cut(s) 141, 490, 804, 1039, 1344, 1626, 1734
MboI GATC 7 cut(s) 139, 488, 802, 1037, 1342, 1624, 1732
MflI RGATCY 4 cut(s) 488, 1037, 1624, 1732
MhlI GDGCHC 4 cut(s) 1071, 1243, 1311, 1796
MlsI TGGCCA 1 cut(s) 746
MluCI AATT 9 cut(s) 157, 223, 543, 576, 613, 705, 1023, 1269, 1848
MluI ACGCGT 1 cut(s) 1426
MluNI TGGCCA 1 cut(s) 746
MlyI GAGTC 2 cut(s) 684, 1344
MmeI TCCRAC 2 cut(s) 394, 1414
Mox20I TGGCCA 1 cut(s) 746
MroXI GAANNNNTTC 4 cut(s) 552, 839, 1278, 1464
MscI TGGCCA 1 cut(s) 746
MseI TTAA 4 cut(s) 17, 351, 1026, 1847
MslI CAYNNNNRTG 2 cut(s) 1098, 1191
Msp20I TGGCCA 1 cut(s) 746
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 2 cut(s) 1312, 1443
MspR9I CCNGG 3 cut(s) 958, 1313, 1443
MssI GTTTAAAC 1 cut(s) 18
MvaI CCWGG 1 cut(s) 958
MvnI CGCG 2 cut(s) 1300, 1428
MwoI GCNNNNNNNGC 6 cut(s) 652, 1247, 1306, 1364, 1643, 1709
NciI CCSGG 2 cut(s) 1313, 1443
NdeI CATATG 1 cut(s) 565
NdeII GATC 7 cut(s) 139, 488, 802, 1037, 1342, 1624, 1732
NlaIII CATG 8 cut(s) 77, 254, 530, 919, 1196, 1230, 1286, 1666
NlaIV GGNNCC 3 cut(s) 256, 316, 1174
NmuCI GTSAC 4 cut(s) 505, 1133, 1556, 1584
PagI TCATGA 2 cut(s) 1192, 1282
PauI GCGCGC 1 cut(s) 1298
PciSI GCTCTTC 1 cut(s) 1820
PdmI GAANNNNTTC 4 cut(s) 552, 839, 1278, 1464
PfeI GAWTC 3 cut(s) 134, 583, 1460
PflMI CCANNNNNTGG 2 cut(s) 437, 1786
PkrI GCNGC 4 cut(s) 155, 986, 1113, 1636
PleI GAGTC 2 cut(s) 684, 1344
PmeI GTTTAAAC 1 cut(s) 18
PpsI GAGTC 2 cut(s) 684, 1344
Psp124BI GAGCTC 1 cut(s) 1071
Psp6I CCWGG 1 cut(s) 956
PspFI CCCAGC 1 cut(s) 1114
PspGI CCWGG 1 cut(s) 956
PspN4I GGNNCC 3 cut(s) 256, 316, 1174
PstNI CAGNNNCTG 3 cut(s) 586, 1463, 1634
PsuI RGATCY 4 cut(s) 488, 1037, 1624, 1732
PteI GCGCGC 1 cut(s) 1298
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 2 cut(s) 1098, 1191
SacI GAGCTC 1 cut(s) 1071
SapI GCTCTTC 1 cut(s) 1820
SaqAI TTAA 4 cut(s) 17, 351, 1026, 1847
SatI GCNGC 4 cut(s) 154, 985, 1112, 1635
Sau3AI GATC 7 cut(s) 139, 488, 802, 1037, 1342, 1624, 1732
SchI GAGTC 2 cut(s) 684, 1344
ScrFI CCNGG 3 cut(s) 958, 1313, 1443
SduI GDGCHC 4 cut(s) 1071, 1243, 1311, 1796
SfaNI GCATC 2 cut(s) 243, 1820
SfcI CTRYAG 2 cut(s) 243, 1163
SmiMI CAYNNNNRTG 2 cut(s) 1098, 1191
SmlI CTYRAG 2 cut(s) 368, 1070
SmoI CTYRAG 2 cut(s) 368, 1070
Sse9I AATT 9 cut(s) 157, 223, 543, 576, 613, 705, 1023, 1269, 1848
SsiI CCGC 1 cut(s) 1717
SspI AATATT 2 cut(s) 1002, 1785
SspMI CTAG 4 cut(s) 347, 1041, 1125, 1379
SstI GAGCTC 1 cut(s) 1071
StyD4I CCNGG 3 cut(s) 956, 1311, 1441
TaaI ACNGT 5 cut(s) 89, 395, 517, 858, 1398
TaqI TCGA 4 cut(s) 927, 1487, 1683, 1724
TasI AATT 9 cut(s) 157, 223, 543, 576, 613, 705, 1023, 1269, 1848
TfiI GAWTC 3 cut(s) 134, 583, 1460
Tru1I TTAA 4 cut(s) 17, 351, 1026, 1847
Tru9I TTAA 4 cut(s) 17, 351, 1026, 1847
TscAI CASTG 6 cut(s) 94, 400, 852, 1257, 1614, 1846
TseFI GTSAC 4 cut(s) 505, 1133, 1556, 1584
TseI GCWGC 4 cut(s) 153, 984, 1111, 1634
Tsp45I GTSAC 4 cut(s) 505, 1133, 1556, 1584
TspRI CASTG 6 cut(s) 94, 400, 852, 1257, 1614, 1846
Van91I CCANNNNNTGG 2 cut(s) 437, 1786
VneI GTGCAC 1 cut(s) 1307
XapI RAATTY 2 cut(s) 576, 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 1838
XmiI GTMKAC 1 cut(s) 1692
XmnI GAANNNNTTC 4 cut(s) 552, 839, 1278, 1464
XspI CTAG 4 cut(s) 347, 1041, 1125, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.