Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01102

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Reverse (-)

17899 .. 20114

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAGATGCAACAGTTTTTGAATCAGACGGACCGGTAGTATTTTCTCTCGAGGAGATAGAAGAGGCTACCGGTTATTTTGATGAAAGTAAGATCATTGGAGAGGGTGGATATGGTAAAGTATACTTCGGAGTACTAGGGGAAAAGGAGGTCGCCATAAAGAAGATGAGATCTAACATGTGCAAAGAATTCTTTGCAGAGCTAAAGGTTGAGCTTTTAGGGTACGCCAGTGGCCATGACCACCTCTACCTGGTCTATGAGTATATTCAGAATGGATCATTGAGCGAACATCTACATGATCCATTGCTTAAAGGTCATCAGCCTCTCTCCTGGACTGCAAGAACACAAATTGCACTGGATACTGCAAAAGGTATTGAATACATTCATGACCACACAAAAGCTCGATATGTGCACCGTGATATAAAGACAAGTAACATTCTACTTGATGAGGGTCTCAGAGCAAAGGTAGCAGATTTTGGTTTGGCAAAGCTTGTTGGCAGAACCAATGAAGAAGATATTATAGCCACAAGACTCGTTGGAACACCGGGCTATCTCCCTCCAGAATCTGTGCAGGAGCTCCAGGTGACTCACAAGACTGATGTATTTGCATTTGGAGTGGTACTTGGAGAACTGATTACAGGGCAACTTGCACTGTTCCGTGACAACCGGGAGCCTGCAAAGATGAAATCTTTGATTACAGTAATAAAAAAGGTGTTCCAAGATGGTGAACCAGAATTAGCTTTGGAGGCTGTCACAGACCCTAGTCTCCAGGGCAACTATCCTATAGAAGAGATATTCAAGATGGCAGAAATATCAGAGTGGTGTTTGAGTGAAGAAGCAGTGGGAAGGCCCGAGATGAGAGAGATTGTTGTGCTGCTCTCACAAATAGTGACAACCTCTACTGAATGGGAAGCATCACTTGGCGGTAACAGTCAAGTTTTTAGTGGCTTGTTTAGTGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

321

Amino Acids

35.73

Weight (kDa)

4.88

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	28 - 289	1.2e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	30 - 290	5.6e-35	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	1 cut(s)	924
AclWI	GGATC	2 cut(s)	283, 293
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	3 cut(s)	135, 224, 621
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	177
AgeI	ACCGGT	2 cut(s)	34, 71
AgsI	TTSAA	3 cut(s)	23, 377, 799
AjnI	CCWGG	4 cut(s)	249, 329, 579, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	903, 935
AluBI	AGCT	6 cut(s)	202, 214, 401, 490, 577, 740
AluI	AGCT	6 cut(s)	202, 214, 401, 490, 577, 740
Alw21I	GWGCWC	2 cut(s)	414, 579
Alw26I	GTCTC	2 cut(s)	458, 770
Alw44I	GTGCAC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	283, 293
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	2 cut(s)	50, 851
AoxI	GGCC	2 cut(s)	232, 848
ApaLI	GTGCAC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	874
ApoI	RAATTY	1 cut(s)	188
AsiGI	ACCGGT	2 cut(s)	34, 71
Asp700I	GAANNNNTTC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	32, 849
AsuC2I	CCSGG	2 cut(s)	546, 668
AsuHPI	GGTGA	2 cut(s)	595, 737
AvaI	CYCGRG	2 cut(s)	50, 851
AvaII	GGWCC	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	414
BaeI	ACNNNNGTAYC	2 cut(s)	214, 247
BalI	TGGCCA	1 cut(s)	234
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	414, 579
BbvI	GCAGC	1 cut(s)	861
BccI	CCATC	2 cut(s)	716, 796
BciT130I	CCWGG	4 cut(s)	251, 331, 581, 770
BciVI	GTATCC	1 cut(s)	352
BcnI	CCSGG	2 cut(s)	546, 668
BcoDI	GTCTC	2 cut(s)	458, 770
BfaI	CTAG	2 cut(s)	137, 762
BfmI	CTRYAG	1 cut(s)	783
BfuI	GTATCC	1 cut(s)	352
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	1 cut(s)	875
BlsI	GCNGC	1 cut(s)	876
BmcAI	AGTACT	1 cut(s)	135
Bme1390I	CCNGG	6 cut(s)	251, 331, 546, 581, 668, 770
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	2 cut(s)	50, 851
BmgT120I	GGNCC	2 cut(s)	32, 849
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	6 cut(s)	251, 331, 546, 581, 668, 770
BmsI	GCATC	1 cut(s)	923
BoxI	GACNNNNGTC	1 cut(s)	762
BpmI	CTGGAG	3 cut(s)	543, 563, 752
BpuMI	CCSGG	2 cut(s)	546, 668
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	769
BsaWI	WCCGGW	2 cut(s)	34, 71
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	2 cut(s)	34, 71
Bse1I	ACTGG	2 cut(s)	228, 360
Bse3DI	GCAATG	1 cut(s)	302
BseBI	CCWGG	4 cut(s)	251, 331, 581, 770
BseDI	CCNNGG	1 cut(s)	769
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	469
BseNI	ACTGG	2 cut(s)	228, 360
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	861
BsgI	GTGCAG	1 cut(s)	590
BshFI	GGCC	2 cut(s)	234, 850
BshTI	ACCGGT	2 cut(s)	34, 71
BsiHKAI	GWGCWC	2 cut(s)	414, 579
BsiHKCI	CYCGRG	2 cut(s)	50, 851
BsiSI	CCGG	4 cut(s)	35, 72, 545, 667
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	2 cut(s)	458, 770
BsnI	GGCC	2 cut(s)	234, 850
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	2 cut(s)	50, 851
Bsp1286I	GDGCHC	2 cut(s)	414, 579
Bsp143I	GATC	4 cut(s)	93, 170, 275, 298
BspACI	CCGC	1 cut(s)	924
BspANI	GGCC	2 cut(s)	234, 850
BspCNI	CTCAG	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	672
BspPI	GGATC	2 cut(s)	283, 293
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	302
BsrFI	RCCGGY	2 cut(s)	34, 71
BsrI	ACTGG	2 cut(s)	228, 360
BssAI	RCCGGY	2 cut(s)	34, 71
BssECI	CCNNGG	1 cut(s)	769
BssMI	GATC	4 cut(s)	93, 170, 275, 298
BssNAI	GTATAC	1 cut(s)	124
Bst1107I	GTATAC	1 cut(s)	124
Bst2UI	CCWGG	4 cut(s)	251, 331, 581, 770
Bst4CI	ACNGT	5 cut(s)	16, 416, 654, 700, 932
Bst6I	CTCTTC	2 cut(s)	57, 783
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	1 cut(s)	455
BstKTI	GATC	4 cut(s)	96, 173, 278, 301
BstMAI	GTCTC	2 cut(s)	458, 770
BstMBI	GATC	4 cut(s)	93, 170, 275, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 746
BstNI	CCWGG	4 cut(s)	251, 331, 581, 770
BstNSI	RCATGY	1 cut(s)	181
BstPAI	GACNNNNGTC	1 cut(s)	762
BstSCI	CCNGG	6 cut(s)	249, 329, 544, 579, 666, 768
BstSFI	CTRYAG	1 cut(s)	783
BstSLI	GKGCMC	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	861
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BstZ17I	GTATAC	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	234, 850
BtsI	GCAGTG	1 cut(s)	846
BtsIMutI	CAGTG	4 cut(s)	235, 353, 650, 846
Cac8I	GCNNGC	1 cut(s)	675
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	385
Cfr10I	RCCGGY	2 cut(s)	34, 71
Cfr13I	GGNCC	2 cut(s)	32, 849
CpoI	CGGWCCG	1 cut(s)	32
CsiI	ACCWGGT	1 cut(s)	249
Csp6I	GTAC	3 cut(s)	134, 223, 620
CspAI	ACCGGT	2 cut(s)	34, 71
CspI	CGGWCCG	1 cut(s)	32
CviAII	CATG	4 cut(s)	178, 236, 296, 386
CviQI	GTAC	3 cut(s)	134, 223, 620
DdeI	CTNAG	1 cut(s)	455
DpnI	GATC	4 cut(s)	95, 172, 277, 300
DpnII	GATC	4 cut(s)	93, 170, 275, 298
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	57, 783
EarI	CTCTTC	2 cut(s)	57, 783
Ecl136II	GAGCTC	1 cut(s)	577
Eco24I	GRGCYC	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	577
Eco88I	CYCGRG	2 cut(s)	50, 851
EcoICRI	GAGCTC	1 cut(s)	577
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	4 cut(s)	249, 329, 579, 768
EcoT38I	GRGCYC	1 cut(s)	579
FaeI	CATG	4 cut(s)	181, 239, 299, 389
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FatI	CATG	4 cut(s)	177, 235, 295, 385
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	875
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	1 cut(s)	875
FspBI	CTAG	2 cut(s)	137, 762
GluI	GCNGC	1 cut(s)	875
GsuI	CTGGAG	3 cut(s)	543, 563, 752
HaeIII	GGCC	2 cut(s)	234, 850
HapII	CCGG	4 cut(s)	35, 72, 545, 667
Hin1II	CATG	4 cut(s)	181, 239, 299, 389
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	23, 531, 563, 586
HpaII	CCGG	4 cut(s)	35, 72, 545, 667
HphI	GGTGA	2 cut(s)	595, 737
Hpy166II	GTNNAC	3 cut(s)	124, 412, 728
Hpy188I	TCNGA	5 cut(s)	28, 131, 270, 458, 817
Hpy188III	TCNNGA	4 cut(s)	50, 386, 560, 799
Hpy8I	GTNNAC	3 cut(s)	124, 412, 728
HpyAV	CCTTC	1 cut(s)	840
HpyCH4III	ACNGT	5 cut(s)	16, 416, 654, 700, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 746
HpyF3I	CTNAG	1 cut(s)	455
Hsp92II	CATG	4 cut(s)	181, 239, 299, 389
Kzo9I	GATC	4 cut(s)	93, 170, 275, 298
LmnI	GCTCC	3 cut(s)	574, 582, 670
Lsp1109I	GCAGC	1 cut(s)	861
LweI	GCATC	1 cut(s)	923
MabI	ACCWGGT	1 cut(s)	249
MaeI	CTAG	2 cut(s)	137, 762
MaeIII	GTNAC	6 cut(s)	431, 583, 659, 751, 889, 926
MalI	GATC	4 cut(s)	95, 172, 277, 300
MboI	GATC	4 cut(s)	93, 170, 275, 298
MboII	GAAGA	7 cut(s)	17, 74, 175, 521, 524, 800, 845
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	414, 579
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	3 cut(s)	188, 348, 734
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	2 cut(s)	525, 580
MmeI	TCCRAC	1 cut(s)	517
Mox20I	TGGCCA	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	234
MspI	CCGG	4 cut(s)	35, 72, 545, 667
MspR9I	CCNGG	6 cut(s)	251, 331, 546, 581, 668, 770
MvaI	CCWGG	4 cut(s)	251, 331, 581, 770
MwoI	GCNNNNNNNGC	2 cut(s)	467, 746
NciI	CCSGG	2 cut(s)	546, 668
NdeII	GATC	4 cut(s)	93, 170, 275, 298
NlaIII	CATG	4 cut(s)	181, 239, 299, 389
NlaIV	GGNNCC	1 cut(s)	672
NmuCI	GTSAC	4 cut(s)	583, 659, 751, 889
NspI	RCATGY	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	50
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	2 cut(s)	23, 563
PfoI	TCCNGGA	1 cut(s)	329
PinAI	ACCGGT	2 cut(s)	34, 71
PkrI	GCNGC	1 cut(s)	876
PleI	GAGTC	2 cut(s)	525, 580
PpsI	GAGTC	2 cut(s)	525, 580
PscI	ACATGT	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	4 cut(s)	249, 329, 579, 768
PspGI	CCWGG	4 cut(s)	249, 329, 579, 768
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	2 cut(s)	32, 849
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	3 cut(s)	135, 224, 621
RsaNI	GTAC	3 cut(s)	134, 223, 620
RseI	CAYNNNNRTG	1 cut(s)	294
Rsr2I	CGGWCCG	1 cut(s)	32
RsrII	CGGWCCG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	875
Sau3AI	GATC	4 cut(s)	93, 170, 275, 298
Sau96I	GGNCC	2 cut(s)	32, 849
ScaI	AGTACT	1 cut(s)	135
SchI	GAGTC	2 cut(s)	525, 580
ScrFI	CCNGG	6 cut(s)	251, 331, 546, 581, 668, 770
SduI	GDGCHC	2 cut(s)	414, 579
SexAI	ACCWGGT	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	923
SfcI	CTRYAG	1 cut(s)	783
Sfr274I	CTCGAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	188, 348, 734
SsiI	CCGC	1 cut(s)	924
SspMI	CTAG	2 cut(s)	137, 762
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	6 cut(s)	249, 329, 544, 579, 666, 768
TaaI	ACNGT	5 cut(s)	16, 416, 654, 700, 932
TaqI	TCGA	2 cut(s)	51, 403
TasI	AATT	3 cut(s)	188, 348, 734
TatI	WGTACW	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	23, 563
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	4 cut(s)	235, 360, 657, 846
TseFI	GTSAC	4 cut(s)	583, 659, 751, 889
TseI	GCWGC	1 cut(s)	874
Tsp45I	GTSAC	4 cut(s)	583, 659, 751, 889
TspDTI	ATGAA	4 cut(s)	99, 374, 522, 698
TspGWI	ACGGA	2 cut(s)	45, 647
TspRI	CASTG	4 cut(s)	235, 360, 657, 846
VneI	GTGCAC	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	2 cut(s)	137, 762
ZrmI	AGTACT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.