Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Forward (+)

11319760 .. 11321455

Gene Structure 1696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCCTCAATTGGTTCACTTACATCAAGTTCTTCTTGCTGCAGAAACTTTTGAGAATGATAGACCTGTTATATATACTATGGAGGAGATCAAAGAGGCTACAAATAACTTTGACGATACCAGAAAGATTGGGGAGGGTGGATACGGTTGTGTTTACTTTGCCATAATAGGAGAAGTAAAAGTTGCAATTAAGAATATGAGATCTACCAGGACAAAAGAATTCTTTGCTGAGCTCAAGGTGTTATGCAAGATACATCATAACAATGTGGTGGAGCTGCTAGGATATGCTAGTGGAAGTGAACATCTTTGTTTGGTATATGAGTTTGTTCAGAATGGATCTCTCAACGACCATCTTCATGATCCATTGTTGAAAGGTCGCCAACCTCTTTCATGGACTGCAAGAGCACAGATAGCACTGGATACTGCAAGAGGGATTGAATACATTCATGATCACACGAAGAAACGCTATGTCCACCGTGATATAAAAACGAGTAATATTCTACTTGATGAAGGACTCAGAGCCAAGGTAGCAGATTTTGGGCTAGCAAGGTTAGTGGAACGGTCTAATGAAGAAGATATAGTTGCAACTCGTGTAGTTGGAACACCCGGTTACATTCCTCCTGAATCGGTGCGGGAGCTACAAATGACAGCAAAAGGTGATGTATATGCATTCGGAGTGGTTATAGGAGAGCTAATAACTGGTCAGCGTGCCATTGTTCGTGACAACCGAGAGCCAAAAAGGATGAAATCACTGGTCTCAGTTTTGTTAGAAGTATTCCAAGATAATGATCCAGAGATTGCTTTGGAAGCTAAAATAGATGGTAATTTGAAAGGAAGCTACCCCATGGAAGAAGTCTACAAGATGGGAGAAATAGCAAGATGGTGTTCGAGTGAAGATCCAGTAAATCGGCCAGAGATGCATGAGATTGTACAATCACTCTCCCAAATTTTGATGTACTCAATAGAATGGGAAGCATCCCTTGGAGGGAAGAGTGAGGTCTTCAGTGGATTATTCAGTGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

341

Amino Acids

38.48

Weight (kDa)

5.63

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	38 - 312	1.7e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	40 - 313	4.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	855
AciI	CCGC	1 cut(s)	631
AclWI	GGATC	4 cut(s)	343, 353, 782, 890
AcoI	YGGCCR	1 cut(s)	908
AcsI	RAATTY	2 cut(s)	218, 945
AcuI	CTGAAG	1 cut(s)	985
AfaI	GTAC	2 cut(s)	930, 956
AfiI	CCNNNNNNNGG	1 cut(s)	984
AgsI	TTSAA	3 cut(s)	370, 437, 829
AjnI	CCWGG	1 cut(s)	206
AjuI	GAANNNNNNNTTGG	2 cut(s)	963, 995
AluBI	AGCT	6 cut(s)	232, 274, 637, 691, 809, 837
AluI	AGCT	6 cut(s)	232, 274, 637, 691, 809, 837
Alw21I	GWGCWC	2 cut(s)	234, 406
Alw26I	GTCTC	1 cut(s)	760
AlwI	GGATC	4 cut(s)	343, 353, 782, 890
AoxI	GGCC	1 cut(s)	908
ApeKI	GCWGC	2 cut(s)	38, 274
ApoI	RAATTY	2 cut(s)	218, 945
Asp700I	GAANNNNTTC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	1 cut(s)	668
AsuNHI	GCTAGC	1 cut(s)	541
BaeI	ACNNNNGTAYC	2 cut(s)	133, 166
BanII	GRGCYC	1 cut(s)	234
BauI	CACGAG	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	991
Bbv12I	GWGCWC	2 cut(s)	234, 406
BbvI	GCAGC	2 cut(s)	25, 261
BccI	CCATC	4 cut(s)	357, 812, 856, 873
BciT130I	CCWGG	1 cut(s)	208
BciVI	GTATCC	2 cut(s)	134, 412
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	760
BfaI	CTAG	3 cut(s)	278, 288, 542
BfmI	CTRYAG	1 cut(s)	39
BfuI	GTATCC	2 cut(s)	134, 412
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	2 cut(s)	39, 275
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	2 cut(s)	40, 276
Bme1390I	CCNGG	2 cut(s)	208, 606
BmrFI	CCNGG	2 cut(s)	208, 606
BmsI	GCATC	2 cut(s)	906, 983
BmtI	GCTAGC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	991
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	606
BsaBI	GATNNNNATC	1 cut(s)	786
BsaI	GGTCTC	1 cut(s)	760
BsaJI	CCNNGG	3 cut(s)	522, 843, 979
Bsc4I	CCNNNNNNNGG	1 cut(s)	984
Bse1I	ACTGG	4 cut(s)	420, 703, 756, 899
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	208
BseDI	CCNNGG	3 cut(s)	522, 843, 979
BseGI	GGATG	2 cut(s)	747, 974
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	1 cut(s)	984
BseMII	CTCAG	3 cut(s)	219, 529, 771
BseNI	ACTGG	4 cut(s)	420, 703, 756, 899
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	2 cut(s)	25, 261
BshFI	GGCC	1 cut(s)	910
BsiHKAI	GWGCWC	2 cut(s)	234, 406
BsiSI	CCGG	1 cut(s)	606
BslI	CCNNNNNNNGG	1 cut(s)	984
BsmAI	GTCTC	1 cut(s)	760
BsmI	GAATGC	1 cut(s)	668
BsnI	GGCC	1 cut(s)	910
Bso31I	GGTCTC	1 cut(s)	760
Bsp1286I	GDGCHC	2 cut(s)	234, 406
Bsp1407I	TGTACA	1 cut(s)	928
Bsp143I	GATC	7 cut(s)	87, 200, 335, 358, 448, 787, 895
Bsp1720I	GCTNAGC	1 cut(s)	228
Bsp19I	CCATGG	1 cut(s)	843
BspACI	CCGC	1 cut(s)	631
BspANI	GGCC	1 cut(s)	910
BspCNI	CTCAG	3 cut(s)	220, 528, 770
BspHI	TCATGA	2 cut(s)	355, 445
BspMAI	CTGCAG	1 cut(s)	43
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	4 cut(s)	343, 353, 782, 890
BspTNI	GGTCTC	1 cut(s)	760
BsrGI	TGTACA	1 cut(s)	928
BsrI	ACTGG	4 cut(s)	420, 703, 756, 899
BssECI	CCNNGG	3 cut(s)	522, 843, 979
BssMI	GATC	7 cut(s)	87, 200, 335, 358, 448, 787, 895
BssSI	CACGAG	1 cut(s)	588
BssT1I	CCWWGG	3 cut(s)	522, 843, 979
Bst2BI	CACGAG	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	208
Bst4CI	ACNGT	3 cut(s)	146, 476, 561
Bst6I	CTCTTC	1 cut(s)	983
BstAUI	TGTACA	1 cut(s)	928
BstC8I	GCNNGC	2 cut(s)	543, 708
BstDEI	CTNAG	3 cut(s)	228, 515, 757
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	2 cut(s)	747, 974
BstKTI	GATC	7 cut(s)	90, 203, 338, 361, 451, 790, 898
BstMAI	GTCTC	1 cut(s)	760
BstMBI	GATC	7 cut(s)	87, 200, 335, 358, 448, 787, 895
BstMWI	GCNNNNNNNGC	4 cut(s)	410, 527, 806, 916
BstNI	CCWGG	1 cut(s)	208
BstSCI	CCNGG	2 cut(s)	206, 604
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	25, 261
BstV2I	GAAGAC	1 cut(s)	991
BstX2I	RGATCY	3 cut(s)	200, 335, 895
BstYI	RGATCY	3 cut(s)	200, 335, 895
BsuI	GTATCC	2 cut(s)	134, 412
BsuRI	GGCC	1 cut(s)	910
BtgI	CCRYGG	1 cut(s)	843
BtsCI	GGATG	2 cut(s)	747, 974
BtsIMutI	CAGTG	4 cut(s)	413, 749, 1009, 1021
Cac8I	GCNNGC	2 cut(s)	543, 708
CciI	TCATGA	2 cut(s)	355, 445
Csp6I	GTAC	2 cut(s)	929, 955
CspCI	CAANNNNNGTGG	2 cut(s)	534, 569
CviAII	CATG	5 cut(s)	356, 390, 446, 844, 920
CviQI	GTAC	2 cut(s)	929, 955
DdeI	CTNAG	3 cut(s)	228, 515, 757
DpnI	GATC	7 cut(s)	89, 202, 337, 360, 450, 789, 897
DpnII	GATC	7 cut(s)	87, 200, 335, 358, 448, 787, 895
EaeI	YGGCCR	1 cut(s)	908
Eam1104I	CTCTTC	1 cut(s)	983
EarI	CTCTTC	1 cut(s)	983
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	3 cut(s)	522, 843, 979
Eco24I	GRGCYC	1 cut(s)	234
Eco31I	GGTCTC	1 cut(s)	760
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	985
EcoICRI	GAGCTC	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	206
EcoT14I	CCWWGG	3 cut(s)	522, 843, 979
EcoT22I	ATGCAT	2 cut(s)	670, 921
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	3 cut(s)	522, 843, 979
FaeI	CATG	5 cut(s)	359, 393, 449, 847, 923
FalI	AAGNNNNNCTT	4 cut(s)	18, 50, 963, 995
FatI	CATG	5 cut(s)	355, 389, 445, 843, 919
FauI	CCCGC	1 cut(s)	624
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	855
Fnu4HI	GCNGC	2 cut(s)	39, 275
FokI	GGATG	2 cut(s)	754, 961
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	2 cut(s)	39, 275
FspBI	CTAG	3 cut(s)	278, 288, 542
GluI	GCNGC	2 cut(s)	39, 275
HaeIII	GGCC	1 cut(s)	910
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	5 cut(s)	359, 393, 449, 847, 923
HinfI	GANTC	2 cut(s)	513, 623
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	5 cut(s)	16, 154, 299, 472, 856
Hpy188I	TCNGA	3 cut(s)	330, 518, 674
Hpy188III	TCNNGA	5 cut(s)	356, 446, 620, 719, 791
Hpy8I	GTNNAC	5 cut(s)	16, 154, 299, 472, 856
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	3 cut(s)	146, 476, 561
HpyCH4V	TGCA	8 cut(s)	41, 185, 246, 398, 425, 584, 668, 919
HpyF10VI	GCNNNNNNNGC	4 cut(s)	410, 527, 806, 916
HpyF3I	CTNAG	3 cut(s)	228, 515, 757
Hsp92II	CATG	5 cut(s)	359, 393, 449, 847, 923
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	7 cut(s)	87, 200, 335, 358, 448, 787, 895
LmnI	GCTCC	2 cut(s)	271, 634
Lsp1109I	GCAGC	2 cut(s)	25, 261
LweI	GCATC	2 cut(s)	906, 983
MaeI	CTAG	3 cut(s)	278, 288, 542
MaeIII	GTNAC	2 cut(s)	608, 719
MalI	GATC	7 cut(s)	89, 202, 337, 360, 450, 789, 897
MboI	GATC	7 cut(s)	87, 200, 335, 358, 448, 787, 895
MboII	GAAGA	9 cut(s)	23, 344, 469, 581, 584, 860, 905, 991, 1000
MfeI	CAATTG	1 cut(s)	8
MflI	RGATCY	3 cut(s)	200, 335, 895
MhlI	GDGCHC	2 cut(s)	234, 406
MluCI	AATT	5 cut(s)	8, 186, 218, 823, 945
MlyI	GAGTC	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	9 cut(s)	15, 76, 88, 127, 393, 422, 627, 977, 988
Mph1103I	ATGCAT	2 cut(s)	670, 921
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	261, 354
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	208, 606
MunI	CAATTG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	668
MvaI	CCWGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	4 cut(s)	410, 527, 806, 916
NciI	CCSGG	1 cut(s)	606
NcoI	CCATGG	1 cut(s)	843
NdeII	GATC	7 cut(s)	87, 200, 335, 358, 448, 787, 895
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	5 cut(s)	359, 393, 449, 847, 923
NmuCI	GTSAC	1 cut(s)	719
NsiI	ATGCAT	2 cut(s)	670, 921
PagI	TCATGA	2 cut(s)	355, 445
PcsI	WCGNNNNNNNCGW	1 cut(s)	724
PctI	GAATGC	1 cut(s)	668
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	623
PkrI	GCNGC	2 cut(s)	40, 276
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	43
PsuI	RGATCY	3 cut(s)	200, 335, 895
RsaI	GTAC	2 cut(s)	930, 956
RsaNI	GTAC	2 cut(s)	929, 955
RseI	CAYNNNNRTG	2 cut(s)	261, 354
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	39, 275
Sau3AI	GATC	7 cut(s)	87, 200, 335, 358, 448, 787, 895
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	2 cut(s)	208, 606
SduI	GDGCHC	2 cut(s)	234, 406
SfaNI	GCATC	2 cut(s)	906, 983
SfcI	CTRYAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	2 cut(s)	261, 354
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	5 cut(s)	8, 186, 218, 823, 945
SsiI	CCGC	1 cut(s)	631
SspI	AATATT	1 cut(s)	496
SspMI	CTAG	3 cut(s)	278, 288, 542
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	206, 604
StyI	CCWWGG	3 cut(s)	522, 843, 979
TaaI	ACNGT	3 cut(s)	146, 476, 561
TaqI	TCGA	1 cut(s)	887
TasI	AATT	5 cut(s)	8, 186, 218, 823, 945
TatI	WGTACW	2 cut(s)	928, 954
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	4 cut(s)	420, 756, 1009, 1021
TseFI	GTSAC	1 cut(s)	719
TseI	GCWGC	2 cut(s)	38, 274
Tsp45I	GTSAC	1 cut(s)	719
TspDTI	ATGAA	6 cut(s)	344, 378, 434, 522, 582, 758
TspRI	CASTG	4 cut(s)	420, 756, 1009, 1021
XapI	RAATTY	2 cut(s)	218, 945
XmiI	GTMKAC	1 cut(s)	855
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	3 cut(s)	278, 288, 542
Zsp2I	ATGCAT	2 cut(s)	670, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.