Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Forward (+)

11233978 .. 11236585

Gene Structure 2608 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG133000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1554 bp

ATGGAAATGGCTTCCCTGAACTTTCTCTTCATTCTCTTCACCATTTTGTACGCTTCCGTCCTCTCTGCCAGTGATAGTGTTGGCGCAGAGCCAATTCACATATACCCTTTTACTTGCTCTGCTTCTCATCACATCCCGAGCTGCAATTCCAAGCTGTATCACATTTCTACAGGCCATCAAATTGAAGAAATAGCCTATTTTTACAAGGTGAATGTATCCGAGCTTGAGCCCATAAACCGTGATCAAAGTCAAAAGGACTATCTTGTATCTGTGCCTTGCAGTTGTAAGGACATTGATGGCACACAAATGTACGTGTATGATACCAATTATCCAGTTCAATCAGGGGACACATTTGAGAGAGTTGCAGGCGAGTTTTACAGTAGCCAAGCCTTGAGGGGGGAAGGCAATTTGAGCACCATACATCTTGTTTGTGGCTGCGTGAAGAAAAAGTCGCAGGAGATTGTGACATACACAGTTCAAGAGCATGACACTTTATCAGGAATTGGACATCTTCTAGATGCATACGAGTCTGAAATTGAGACATACAATAGAAACTTTACTAAAGATCCGAGTTTTCTAGATGTAGGTTGGGTGTTGTATGTGCCGAAGAATGGACTTCGAGCTAACAAGAAAGGAAAAAGACTCAAGGTGTCTATAGTCATAGGTGTATCGTCCGCTGTTTGTTTTGTTTTGGTGGCCGCCTTCATTGTGTTCCTTCTAATGAGAAATAGGATCTGTAGGAACCTAGGGGATGATTTGCACCTTGTAAACTCAAGTGCGAAGAAACGTTCCTCGCTGAAGCAACAGTTTTTTAAAAAGGAAATGGAAGAAACTTTTGAGAATGATAGACCTGTTATATATACTATGGAGGAGATCAAAGAGGCTACAAATAACTTTGACGATACCAGAAAGATTGGGGAGGGTGGATACGGTTGTGTTTACTTTGCCATAATAGGAGAAGTAAAAGTTGCAATTAAGAATATGAGATCTACCAGAACAAAAGAATTCTTTGCTGAGCTCAAGGTGTTATGCAAGATACATCATAACAATGTGGTAGCAGATTTTGGGCTAGCAAGGTTAGTGGAACGGTCTAATGAAGAAGATATAGTTGCAACTCGTGTAGTTGGAACACCCGGTTACATTCCTCCTGAATCGGTGCGGGAGCTACAAATGACAGCAAAAGGTGATGTATATGCATTCGGAGTGGTTATAGGAGAGCTAATAACTGGTCAGCGTGCCATTGTTCGTGACAACCGAGAGCCAAAAAGGATGAAATCACTGGTCTCAGTTTTGTTAGAAGTATTCCAAGATAATGATCCAGAGATTGCTTTGGAAGCTAAAATAGATGGTAATTTGAAAGGAAGCTACCCCATGGAAGAAGTCTACAAGATGGGAGAAATAGCAAGATGGTGTTCGAGTGAAGATCCAGTAAATCGGCCAGAGATGCATGAGATTGTACAATCACTCTCCCAAATTTTGATGTACTCAATAGAATGGGAAGCATCCCTTGGAGGGAAGAGTGAGGTCTTCAGTGGATTATTCAGTGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

517

Amino Acids

58.19

Weight (kDa)

5.68

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	352 - 488	4.4e-14	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	352 - 489	9.6e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1383
AciI	CCGC	3 cut(s)	675, 699, 1159
AclI	AACGTT	1 cut(s)	787
AclWI	GGATC	4 cut(s)	560, 740, 1310, 1418
AcoI	YGGCCR	2 cut(s)	696, 1436
AcsI	RAATTY	2 cut(s)	1004, 1473
AcuI	CTGAAG	2 cut(s)	818, 1513
AfaI	GTAC	4 cut(s)	50, 311, 1458, 1484
AfiI	CCNNNNNNNGG	3 cut(s)	396, 611, 1512
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	4 cut(s)	185, 338, 479, 1357
AjuI	GAANNNNNNNTTGG	2 cut(s)	1491, 1523
AluBI	AGCT	9 cut(s)	141, 154, 223, 623, 1018, 1165, 1219, 1337, 1365
AluI	AGCT	9 cut(s)	141, 154, 223, 623, 1018, 1165, 1219, 1337, 1365
Alw21I	GWGCWC	2 cut(s)	416, 1020
Alw26I	GTCTC	2 cut(s)	533, 1288
AlwI	GGATC	4 cut(s)	560, 740, 1310, 1418
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	3 cut(s)	172, 696, 1436
ApeKI	GCWGC	2 cut(s)	141, 435
ApoI	RAATTY	2 cut(s)	1004, 1473
AspA2I	CCTAGG	1 cut(s)	745
AspLEI	GCGC	1 cut(s)	86
AsuC2I	CCSGG	1 cut(s)	1134
AsuHPI	GGTGA	3 cut(s)	31, 220, 1196
AsuNHI	GCTAGC	1 cut(s)	1069
AvaI	CYCGRG	1 cut(s)	136
AvrII	CCTAGG	1 cut(s)	745
BaeI	ACNNNNGTAYC	2 cut(s)	919, 952
BanII	GRGCYC	2 cut(s)	231, 1020
BauI	CACGAG	1 cut(s)	1116
BbsI	GAAGAC	1 cut(s)	1519
Bbv12I	GWGCWC	2 cut(s)	416, 1020
BbvI	GCAGC	2 cut(s)	128, 422
BccI	CCATC	5 cut(s)	183, 290, 1340, 1384, 1401
BciVI	GTATCC	2 cut(s)	226, 920
BclI	TGATCA	1 cut(s)	241
BcnI	CCSGG	1 cut(s)	1134
BcoDI	GTCTC	2 cut(s)	533, 1288
BfaI	CTAG	4 cut(s)	515, 578, 746, 1070
BfmI	CTRYAG	3 cut(s)	168, 654, 736
BfuI	GTATCC	2 cut(s)	226, 920
BglII	AGATCT	1 cut(s)	986
BisI	GCNGC	3 cut(s)	142, 436, 699
BlnI	CCTAGG	1 cut(s)	745
BlpI	GCTNAGC	1 cut(s)	1014
BlsI	GCNGC	3 cut(s)	143, 437, 700
Bme1390I	CCNGG	1 cut(s)	1134
BmeT110I	CYCGRG	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	743
BmrFI	CCNGG	1 cut(s)	1134
BmsI	GCATC	3 cut(s)	508, 1434, 1511
BmtI	GCTAGC	1 cut(s)	1073
BpiI	GAAGAC	1 cut(s)	1519
Bpu1102I	GCTNAGC	1 cut(s)	1014
BpuEI	CTTGAG	5 cut(s)	245, 412, 629, 757, 1004
BpuMI	CCSGG	1 cut(s)	1134
BsaAI	YACGTR	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	1314
BsaI	GGTCTC	1 cut(s)	1288
BsaJI	CCNNGG	3 cut(s)	745, 1371, 1507
Bsc4I	CCNNNNNNNGG	3 cut(s)	396, 611, 1512
Bse1I	ACTGG	5 cut(s)	69, 332, 1231, 1284, 1427
Bse8I	GATNNNNATC	1 cut(s)	1314
BseDI	CCNNGG	3 cut(s)	745, 1371, 1507
BseGI	GGATG	4 cut(s)	132, 757, 1275, 1502
BseJI	GATNNNNATC	1 cut(s)	1314
BseLI	CCNNNNNNNGG	3 cut(s)	396, 611, 1512
BseMII	CTCAG	2 cut(s)	1005, 1299
BseNI	ACTGG	5 cut(s)	69, 332, 1231, 1284, 1427
BseRI	GAGGAG	1 cut(s)	884
BseXI	GCAGC	2 cut(s)	128, 422
BshFI	GGCC	3 cut(s)	174, 698, 1438
BsiHKAI	GWGCWC	2 cut(s)	416, 1020
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	1134
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	3 cut(s)	396, 611, 1512
BsmAI	GTCTC	2 cut(s)	533, 1288
BsmFI	GGGAC	1 cut(s)	359
BsmI	GAATGC	1 cut(s)	1196
BsnI	GGCC	3 cut(s)	174, 698, 1438
Bso31I	GGTCTC	1 cut(s)	1288
BsoBI	CYCGRG	1 cut(s)	136
Bsp1286I	GDGCHC	3 cut(s)	231, 416, 1020
Bsp1407I	TGTACA	1 cut(s)	1456
Bsp143I	GATC	7 cut(s)	241, 565, 732, 873, 986, 1315, 1423
Bsp1720I	GCTNAGC	1 cut(s)	1014
Bsp19I	CCATGG	1 cut(s)	1371
BspACI	CCGC	3 cut(s)	675, 699, 1159
BspANI	GGCC	3 cut(s)	174, 698, 1438
BspCNI	CTCAG	2 cut(s)	1006, 1298
BspLI	GGNNCC	1 cut(s)	743
BspOI	GCTAGC	1 cut(s)	1073
BspPI	GGATC	4 cut(s)	560, 740, 1310, 1418
BspTNI	GGTCTC	1 cut(s)	1288
BsrGI	TGTACA	1 cut(s)	1456
BsrI	ACTGG	5 cut(s)	69, 332, 1231, 1284, 1427
BssECI	CCNNGG	3 cut(s)	745, 1371, 1507
BssMI	GATC	7 cut(s)	241, 565, 732, 873, 986, 1315, 1423
BssSI	CACGAG	1 cut(s)	1116
BssT1I	CCWWGG	3 cut(s)	745, 1371, 1507
Bst2BI	CACGAG	1 cut(s)	1116
Bst4CI	ACNGT	6 cut(s)	239, 380, 475, 807, 932, 1089
Bst6I	CTCTTC	3 cut(s)	32, 41, 1511
BstAUI	TGTACA	1 cut(s)	1456
BstBAI	YACGTR	1 cut(s)	313
BstC8I	GCNNGC	3 cut(s)	367, 1071, 1236
BstDEI	CTNAG	2 cut(s)	1014, 1285
BstDSI	CCRYGG	1 cut(s)	1371
BstF5I	GGATG	4 cut(s)	132, 757, 1275, 1502
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	7 cut(s)	244, 568, 735, 876, 989, 1318, 1426
BstMAI	GTCTC	2 cut(s)	533, 1288
BstMBI	GATC	7 cut(s)	241, 565, 732, 873, 986, 1315, 1423
BstMWI	GCNNNNNNNGC	3 cut(s)	411, 1334, 1444
BstSCI	CCNGG	1 cut(s)	1132
BstSFI	CTRYAG	3 cut(s)	168, 654, 736
BstV1I	GCAGC	2 cut(s)	128, 422
BstV2I	GAAGAC	1 cut(s)	1519
BstX2I	RGATCY	4 cut(s)	565, 732, 986, 1423
BstYI	RGATCY	4 cut(s)	565, 732, 986, 1423
BsuI	GTATCC	2 cut(s)	226, 920
BsuRI	GGCC	3 cut(s)	174, 698, 1438
BtgI	CCRYGG	1 cut(s)	1371
BtsCI	GGATG	4 cut(s)	132, 757, 1275, 1502
BtsIMutI	CAGTG	4 cut(s)	76, 1277, 1537, 1549
Cac8I	GCNNGC	3 cut(s)	367, 1071, 1236
CfoI	GCGC	1 cut(s)	86
Csp6I	GTAC	4 cut(s)	49, 310, 1457, 1483
CspCI	CAANNNNNGTGG	2 cut(s)	1062, 1097
CviAII	CATG	3 cut(s)	485, 1372, 1448
CviQI	GTAC	4 cut(s)	49, 310, 1457, 1483
DdeI	CTNAG	2 cut(s)	1014, 1285
DpnI	GATC	7 cut(s)	243, 567, 734, 875, 988, 1317, 1425
DpnII	GATC	7 cut(s)	241, 565, 732, 873, 986, 1315, 1423
DraI	TTTAAA	1 cut(s)	814
EaeI	YGGCCR	2 cut(s)	696, 1436
Eam1104I	CTCTTC	3 cut(s)	32, 41, 1511
EarI	CTCTTC	3 cut(s)	32, 41, 1511
Ecl136II	GAGCTC	1 cut(s)	1018
Eco130I	CCWWGG	3 cut(s)	745, 1371, 1507
Eco24I	GRGCYC	2 cut(s)	231, 1020
Eco31I	GGTCTC	1 cut(s)	1288
Eco53kI	GAGCTC	1 cut(s)	1018
Eco57I	CTGAAG	2 cut(s)	818, 1513
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	1018
EcoRI	GAATTC	1 cut(s)	1004
EcoT14I	CCWWGG	3 cut(s)	745, 1371, 1507
EcoT22I	ATGCAT	3 cut(s)	523, 1198, 1449
EcoT38I	GRGCYC	2 cut(s)	231, 1020
ErhI	CCWWGG	3 cut(s)	745, 1371, 1507
FaeI	CATG	3 cut(s)	488, 1375, 1451
FalI	AAGNNNNNCTT	2 cut(s)	1491, 1523
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	3 cut(s)	484, 1371, 1447
FauI	CCCGC	1 cut(s)	1152
FbaI	TGATCA	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	1383
Fnu4HI	GCNGC	3 cut(s)	142, 436, 699
FokI	GGATG	4 cut(s)	119, 764, 1282, 1489
FriOI	GRGCYC	2 cut(s)	231, 1020
Fsp4HI	GCNGC	3 cut(s)	142, 436, 699
FspBI	CTAG	4 cut(s)	515, 578, 746, 1070
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	3 cut(s)	142, 436, 699
HaeIII	GGCC	3 cut(s)	174, 698, 1438
HapII	CCGG	1 cut(s)	1134
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	488, 1375, 1451
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	3 cut(s)	527, 642, 1151
HpaII	CCGG	1 cut(s)	1134
HphI	GGTGA	3 cut(s)	31, 220, 1196
Hpy166II	GTNNAC	3 cut(s)	769, 940, 1384
Hpy188I	TCNGA	4 cut(s)	220, 532, 570, 1202
Hpy188III	TCNNGA	8 cut(s)	136, 479, 498, 515, 578, 1148, 1247, 1319
Hpy8I	GTNNAC	3 cut(s)	769, 940, 1384
HpyAV	CCTTC	3 cut(s)	395, 712, 725
HpyCH4III	ACNGT	6 cut(s)	239, 380, 475, 807, 932, 1089
HpyCH4IV	ACGT	2 cut(s)	312, 787
HpyF10VI	GCNNNNNNNGC	3 cut(s)	411, 1334, 1444
HpyF3I	CTNAG	2 cut(s)	1014, 1285
HpySE526I	ACGT	2 cut(s)	312, 787
Hsp92II	CATG	3 cut(s)	488, 1375, 1451
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	7 cut(s)	241, 565, 732, 873, 986, 1315, 1423
LmnI	GCTCC	1 cut(s)	1162
Lsp1109I	GCAGC	2 cut(s)	128, 422
LweI	GCATC	3 cut(s)	508, 1434, 1511
MaeI	CTAG	4 cut(s)	515, 578, 746, 1070
MaeII	ACGT	2 cut(s)	312, 787
MaeIII	GTNAC	3 cut(s)	463, 1136, 1247
MalI	GATC	7 cut(s)	243, 567, 734, 875, 988, 1317, 1425
MboI	GATC	7 cut(s)	241, 565, 732, 873, 986, 1315, 1423
MflI	RGATCY	4 cut(s)	565, 732, 986, 1423
MhlI	GDGCHC	3 cut(s)	231, 416, 1020
MlyI	GAGTC	2 cut(s)	536, 636
MmeI	TCCRAC	1 cut(s)	1105
MnlI	CCTC	9 cut(s)	71, 387, 802, 862, 874, 913, 1155, 1505, 1516
Mph1103I	ATGCAT	3 cut(s)	523, 1198, 1449
MseI	TTAA	2 cut(s)	813, 975
MslI	CAYNNNNRTG	2 cut(s)	305, 1047
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	1 cut(s)	1134
MspR9I	CCNGG	1 cut(s)	1134
Mva1269I	GAATGC	1 cut(s)	1196
MwoI	GCNNNNNNNGC	3 cut(s)	411, 1334, 1444
NciI	CCSGG	1 cut(s)	1134
NcoI	CCATGG	1 cut(s)	1371
NdeII	GATC	7 cut(s)	241, 565, 732, 873, 986, 1315, 1423
NheI	GCTAGC	1 cut(s)	1069
NlaIII	CATG	3 cut(s)	488, 1375, 1451
NlaIV	GGNNCC	1 cut(s)	743
NmuCI	GTSAC	2 cut(s)	463, 1247
NsiI	ATGCAT	3 cut(s)	523, 1198, 1449
PcsI	WCGNNNNNNNCGW	1 cut(s)	1252
PctI	GAATGC	1 cut(s)	1196
PfeI	GAWTC	1 cut(s)	1151
PkrI	GCNGC	3 cut(s)	143, 437, 700
PleI	GAGTC	2 cut(s)	535, 636
PpsI	GAGTC	2 cut(s)	535, 636
Ppu21I	YACGTR	1 cut(s)	313
Psp124BI	GAGCTC	1 cut(s)	1020
Psp1406I	AACGTT	1 cut(s)	787
PspN4I	GGNNCC	1 cut(s)	743
PsuI	RGATCY	4 cut(s)	565, 732, 986, 1423
RsaI	GTAC	4 cut(s)	50, 311, 1458, 1484
RsaNI	GTAC	4 cut(s)	49, 310, 1457, 1483
RseI	CAYNNNNRTG	2 cut(s)	305, 1047
SacI	GAGCTC	1 cut(s)	1020
SaqAI	TTAA	2 cut(s)	813, 975
SatI	GCNGC	3 cut(s)	142, 436, 699
Sau3AI	GATC	7 cut(s)	241, 565, 732, 873, 986, 1315, 1423
SchI	GAGTC	2 cut(s)	536, 636
ScrFI	CCNGG	1 cut(s)	1134
SduI	GDGCHC	3 cut(s)	231, 416, 1020
SfaNI	GCATC	3 cut(s)	508, 1434, 1511
SfcI	CTRYAG	3 cut(s)	168, 654, 736
SmiMI	CAYNNNNRTG	2 cut(s)	305, 1047
SmlI	CTYRAG	5 cut(s)	224, 391, 644, 772, 1019
SmoI	CTYRAG	5 cut(s)	224, 391, 644, 772, 1019
SsiI	CCGC	3 cut(s)	675, 699, 1159
SspMI	CTAG	4 cut(s)	515, 578, 746, 1070
SstI	GAGCTC	1 cut(s)	1020
StyD4I	CCNGG	1 cut(s)	1132
StyI	CCWWGG	3 cut(s)	745, 1371, 1507
TaaI	ACNGT	6 cut(s)	239, 380, 475, 807, 932, 1089
TaiI	ACGT	2 cut(s)	315, 790
TaqI	TCGA	2 cut(s)	619, 1415
TatI	WGTACW	2 cut(s)	1456, 1482
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	1 cut(s)	1151
Tru1I	TTAA	2 cut(s)	813, 975
Tru9I	TTAA	2 cut(s)	813, 975
TscAI	CASTG	4 cut(s)	76, 1284, 1537, 1549
TseFI	GTSAC	2 cut(s)	463, 1247
TseI	GCWGC	2 cut(s)	141, 435
Tsp45I	GTSAC	2 cut(s)	463, 1247
TspDTI	ATGAA	4 cut(s)	19, 694, 1110, 1286
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	4 cut(s)	76, 1284, 1537, 1549
XapI	RAATTY	2 cut(s)	1004, 1473
XbaI	TCTAGA	2 cut(s)	514, 577
XmaJI	CCTAGG	1 cut(s)	745
XmiI	GTMKAC	1 cut(s)	1383
XspI	CTAG	4 cut(s)	515, 578, 746, 1070
Zsp2I	ATGCAT	3 cut(s)	523, 1198, 1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.