Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003063

Physical Location & Seq

Genomic Coordinates Forward (+)

26832051 .. 26833545

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1174500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGGAAATCGAGCAGGCTACAGGCAACTTTGACAACACCAGGAAGATTGGAGAGGGCGGATATGGCAGTGTTTATTACGGTGTATTAGGAGAACTGGAGGTAGCAATTAAGAAGATGAGATCTAGCAGAACAAAGGAGTTCTTTGCTGAGCTCAAGGTTTTATGCAAGATCCATCATAACAATGTGGTAGAACTGCTGGGATATGCTAGTGGAAGTGAGCATCTGTGTTTGGTATATGAGTTTCTTCAGAATCGATCCCTCAATGATCATCTCCATGATCCATTGCTGAAAGGAAACCAACCGCTTTCATGGACAGCAAGAGCACAGATAGCACTGGATACTGCAAGAGGAATTGAGTACATTCATGATCACACGAAGAAGCGCTATGTTCACCGTGACATAAAAACGAGCAACATTTTACTTGATCAGGGACTCAGAGCAAAGGTAGCAGATTTTGGCCTGGCAAGGTTAGTAGAACGGTCGAATGAAGAAGATATTTTAGCAACACGCTTGGTTGGGACACCCGGTTACATTCCTCCAGAATCTGTGCGTGAGCTGCAAATGACATCAAAAACTGATGTTTATGCATTCGGAGTGGTCGTAGCAGAGCTAATAACCGGTCAGCGTGCAATTTTTTGTGACAACCGAGAACCGAAAAGGATGAAGTCACTCATCTCCGTTATATACGCAGTTTTCAAAGAAAAAGATCCAGAAGCTGCTTTGGAAGCTCAAATAGATGGTAACATGAAAGGAAGTTACCCTATGGAAGAAGTCTACAAGATGGCGGAAATAGCGTTGAGGTGTGCAAGTGAAGATCCAGTAAATAGACCAGAGATGAAAGACATTGTGCAAACACTCTCCCAAATATTGACGTCCTCAATTGAATGGGAAGCATTGCTTGGAGGGAAGAGCCAGGTCTTCAGTGGCTTACTCATGAGTGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase

Protein Analysis

317

Amino Acids

35.48

Weight (kDa)

5.97

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 285	1.5e-48	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	14 - 287	8.3e-50	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25871 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950 FvH4_5g05950
malus_domestica	MD06G1169200.v1.1 MD13G1097500.v1.1 MD14G1174500.v1.1 MD16G1098600.v1.1
prunus_persica	Prupe.1G247900_v2.0.a1 Prupe.5G168000_v2.0.a1
pyrus_communis	pycom06g15070 pycom13g08510
rosa_chinensis	RchiOBHm_Chr4g0433311 RchiOBHm_Chr7g0192891
rosa_laevigata	RLG00000004315 RLG00000006764
rosa_multiflora	Rmu_co8450261.1_g000001 Rmu_sc0000354.1_g000008 Rmu_sc0002040.1_g000053
rosa_roxburghii	Rroxscaffold_3G00262570 Rroxscaffold_3G00262580 Rroxscaffold_5G00374870 Rroxscaffold_7G00191320
rosa_rugosa	Rorug04G0268000 Rorug07G0005400
rosa_samantha	Rh4AG322500 Rh4BG330000 Rh4CG345400 Rh4DG326700 Rh7AG131100 Rh7BG131900 Rh7CG135200 Rh7DG133000
rosa_wichuraiana	Rw0G023840 Rw4G027910 Rw7G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	878
AccI	GTMKAC	1 cut(s)	777
AciI	CCGC	3 cut(s)	60, 305, 788
AclWI	GGATC	5 cut(s)	166, 252, 275, 704, 812
AcuI	CTGAAG	2 cut(s)	233, 907
AcyI	GRCGYC	1 cut(s)	875
AfaI	GTAC	1 cut(s)	362
AfeI	AGCGCT	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	620
AgsI	TTSAA	2 cut(s)	700, 887
AjnI	CCWGG	3 cut(s)	41, 462, 915
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	5 cut(s)	154, 559, 613, 719, 731
AluI	AGCT	5 cut(s)	154, 559, 613, 719, 731
Alw21I	GWGCWC	2 cut(s)	156, 328
AlwI	GGATC	5 cut(s)	166, 252, 275, 704, 812
AlwNI	CAGNNNCTG	2 cut(s)	548, 719
Aor51HI	AGCGCT	1 cut(s)	386
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	2 cut(s)	559, 719
AsiGI	ACCGGT	1 cut(s)	620
AspLEI	GCGC	1 cut(s)	387
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	913
Bbv12I	GWGCWC	2 cut(s)	156, 328
BbvI	GCAGC	2 cut(s)	546, 706
BccI	CCATC	3 cut(s)	183, 734, 778
BciT130I	CCWGG	3 cut(s)	43, 464, 917
BciVI	GTATCC	1 cut(s)	334
BclI	TGATCA	3 cut(s)	268, 370, 427
BcnI	CCSGG	1 cut(s)	528
BfaI	CTAG	2 cut(s)	126, 210
BfmI	CTRYAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	388
BfuI	GTATCC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	2 cut(s)	560, 720
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	2 cut(s)	561, 721
Bme1390I	CCNGG	4 cut(s)	43, 464, 528, 917
BmrFI	CCNGG	4 cut(s)	43, 464, 528, 917
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	913
BpmI	CTGGAG	2 cut(s)	119, 525
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	875
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bse118I	RCCGGY	1 cut(s)	620
Bse1I	ACTGG	3 cut(s)	102, 342, 821
Bse3DI	GCAATG	2 cut(s)	284, 896
BseBI	CCWGG	3 cut(s)	43, 464, 917
BseCI	ATCGAT	1 cut(s)	256
BseGI	GGATG	1 cut(s)	669
BseMI	GCAATG	2 cut(s)	284, 896
BseMII	CTCAG	2 cut(s)	141, 451
BseNI	ACTGG	3 cut(s)	102, 342, 821
BseXI	GCAGC	2 cut(s)	546, 706
BseYI	CCCAGC	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	485
BshFI	GGCC	1 cut(s)	462
BshTI	ACCGGT	1 cut(s)	620
BshVI	ATCGAT	1 cut(s)	256
BsiEI	CGRYCG	1 cut(s)	485
BsiHKAI	GWGCWC	2 cut(s)	156, 328
BsiSI	CCGG	2 cut(s)	528, 621
BslFI	GGGAC	2 cut(s)	447, 535
BsmFI	GGGAC	2 cut(s)	447, 535
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	462
Bsp1286I	GDGCHC	2 cut(s)	156, 328
Bsp143I	GATC	9 cut(s)	122, 171, 257, 268, 280, 370, 427, 709, 817
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	3 cut(s)	60, 305, 788
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	2 cut(s)	142, 450
BspDI	ATCGAT	1 cut(s)	256
BspHI	TCATGA	2 cut(s)	367, 936
BspPI	GGATC	5 cut(s)	166, 252, 275, 704, 812
BspQI	GCTCTTC	1 cut(s)	905
BsrDI	GCAATG	2 cut(s)	284, 896
BsrFI	RCCGGY	1 cut(s)	620
BsrI	ACTGG	3 cut(s)	102, 342, 821
BssAI	RCCGGY	1 cut(s)	620
BssMI	GATC	9 cut(s)	122, 171, 257, 268, 280, 370, 427, 709, 817
BssNI	GRCGYC	1 cut(s)	875
Bst2UI	CCWGG	3 cut(s)	43, 464, 917
Bst4CI	ACNGT	3 cut(s)	83, 398, 483
Bst6I	CTCTTC	1 cut(s)	905
BstACI	GRCGYC	1 cut(s)	875
BstC8I	GCNNGC	2 cut(s)	18, 630
BstDEI	CTNAG	2 cut(s)	150, 437
BstF5I	GGATG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	388
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	9 cut(s)	125, 174, 260, 271, 283, 373, 430, 712, 820
BstMBI	GATC	9 cut(s)	122, 171, 257, 268, 280, 370, 427, 709, 817
BstMCI	CGRYCG	1 cut(s)	485
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 332, 449, 559, 728, 794
BstNI	CCWGG	3 cut(s)	43, 464, 917
BstSCI	CCNGG	4 cut(s)	41, 462, 526, 915
BstSFI	CTRYAG	1 cut(s)	21
BstV1I	GCAGC	2 cut(s)	546, 706
BstV2I	GAAGAC	1 cut(s)	913
BstX2I	RGATCY	4 cut(s)	122, 171, 709, 817
BstYI	RGATCY	4 cut(s)	122, 171, 709, 817
Bsu15I	ATCGAT	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	462
BsuTUI	ATCGAT	1 cut(s)	256
BtsCI	GGATG	1 cut(s)	669
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	3 cut(s)	76, 335, 931
Cac8I	GCNNGC	2 cut(s)	18, 630
CaiI	CAGNNNCTG	2 cut(s)	548, 719
CciI	TCATGA	2 cut(s)	367, 936
CfoI	GCGC	1 cut(s)	387
Cfr10I	RCCGGY	1 cut(s)	620
ClaI	ATCGAT	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	361
CspAI	ACCGGT	1 cut(s)	620
CviAII	CATG	5 cut(s)	278, 312, 368, 748, 937
CviJI	RGCY	9 cut(s)	20, 154, 462, 559, 613, 719, 731, 915, 930
CviKI_1	RGCY	9 cut(s)	20, 154, 462, 559, 613, 719, 731, 915, 930
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	150, 437
DpnI	GATC	9 cut(s)	124, 173, 259, 270, 282, 372, 429, 711, 819
DpnII	GATC	9 cut(s)	122, 171, 257, 268, 280, 370, 427, 709, 817
Eam1104I	CTCTTC	1 cut(s)	905
EarI	CTCTTC	1 cut(s)	905
EciI	GGCGGA	2 cut(s)	75, 803
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco47III	AGCGCT	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	233, 907
EcoICRI	GAGCTC	1 cut(s)	154
EcoRII	CCWGG	3 cut(s)	41, 462, 915
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	5 cut(s)	281, 315, 371, 751, 940
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 885, 917
FaqI	GGGAC	2 cut(s)	447, 535
FatI	CATG	5 cut(s)	277, 311, 367, 747, 936
FbaI	TGATCA	3 cut(s)	268, 370, 427
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	2 cut(s)	560, 720
FokI	GGATG	1 cut(s)	676
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	2 cut(s)	560, 720
FspBI	CTAG	2 cut(s)	126, 210
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	2 cut(s)	560, 720
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	2 cut(s)	119, 525
HaeII	RGCGCY	1 cut(s)	388
HaeIII	GGCC	1 cut(s)	462
HapII	CCGG	2 cut(s)	528, 621
HhaI	GCGC	1 cut(s)	387
Hin1I	GRCGYC	1 cut(s)	875
Hin1II	CATG	5 cut(s)	281, 315, 371, 751, 940
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	253, 435, 545
HpaII	CCGG	2 cut(s)	528, 621
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	394, 778
Hpy188I	TCNGA	3 cut(s)	252, 440, 596
Hpy188III	TCNNGA	4 cut(s)	368, 542, 713, 937
Hpy8I	GTNNAC	2 cut(s)	394, 778
HpyCH4III	ACNGT	3 cut(s)	83, 398, 483
HpyCH4IV	ACGT	1 cut(s)	875
HpyCH4V	TGCA	7 cut(s)	168, 347, 562, 590, 632, 809, 853
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 332, 449, 559, 728, 794
HpyF3I	CTNAG	2 cut(s)	150, 437
HpySE526I	ACGT	1 cut(s)	875
Hsp92I	GRCGYC	1 cut(s)	875
Hsp92II	CATG	5 cut(s)	281, 315, 371, 751, 940
HspAI	GCGC	1 cut(s)	385
Ksp22I	TGATCA	3 cut(s)	268, 370, 427
Kzo9I	GATC	9 cut(s)	122, 171, 257, 268, 280, 370, 427, 709, 817
LguI	GCTCTTC	1 cut(s)	905
Lsp1109I	GCAGC	2 cut(s)	546, 706
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	126, 210
MaeII	ACGT	1 cut(s)	875
MaeIII	GTNAC	6 cut(s)	398, 530, 641, 669, 743, 758
MalI	GATC	9 cut(s)	124, 173, 259, 270, 282, 372, 429, 711, 819
MboI	GATC	9 cut(s)	122, 171, 257, 268, 280, 370, 427, 709, 817
MfeI	CAATTG	1 cut(s)	882
MflI	RGATCY	4 cut(s)	122, 171, 709, 817
MhlI	GDGCHC	2 cut(s)	156, 328
MluCI	AATT	4 cut(s)	108, 354, 633, 882
MlyI	GAGTC	1 cut(s)	429
MnlI	CCTC	8 cut(s)	49, 94, 272, 344, 549, 795, 889, 899
Mph1103I	ATGCAT	1 cut(s)	592
MseI	TTAA	1 cut(s)	111
MslI	CAYNNNNRTG	2 cut(s)	183, 276
MspI	CCGG	2 cut(s)	528, 621
MspR9I	CCNGG	4 cut(s)	43, 464, 528, 917
MunI	CAATTG	1 cut(s)	882
Mva1269I	GAATGC	1 cut(s)	590
MvaI	CCWGG	3 cut(s)	43, 464, 917
MwoI	GCNNNNNNNGC	6 cut(s)	66, 332, 449, 559, 728, 794
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	9 cut(s)	122, 171, 257, 268, 280, 370, 427, 709, 817
NlaIII	CATG	5 cut(s)	281, 315, 371, 751, 940
NmuCI	GTSAC	3 cut(s)	398, 641, 669
NsiI	ATGCAT	1 cut(s)	592
PagI	TCATGA	2 cut(s)	367, 936
PciSI	GCTCTTC	1 cut(s)	905
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	253, 545
PinAI	ACCGGT	1 cut(s)	620
PkrI	GCNGC	2 cut(s)	561, 721
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	41, 462, 915
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	3 cut(s)	41, 462, 915
PstNI	CAGNNNCTG	2 cut(s)	548, 719
PsuI	RGATCY	4 cut(s)	122, 171, 709, 817
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	2 cut(s)	183, 276
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	905
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	560, 720
Sau3AI	GATC	9 cut(s)	122, 171, 257, 268, 280, 370, 427, 709, 817
SchI	GAGTC	1 cut(s)	429
ScrFI	CCNGG	4 cut(s)	43, 464, 528, 917
SduI	GDGCHC	2 cut(s)	156, 328
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	2 cut(s)	183, 276
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	4 cut(s)	108, 354, 633, 882
SsiI	CCGC	3 cut(s)	60, 305, 788
SspI	AATATT	1 cut(s)	870
SspMI	CTAG	2 cut(s)	126, 210
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	4 cut(s)	41, 462, 526, 915
TaaI	ACNGT	3 cut(s)	83, 398, 483
TaiI	ACGT	1 cut(s)	878
TaqI	TCGA	3 cut(s)	12, 256, 485
TasI	AATT	4 cut(s)	108, 354, 633, 882
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	253, 545
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	3 cut(s)	76, 342, 931
TseFI	GTSAC	3 cut(s)	398, 641, 669
TseI	GCWGC	2 cut(s)	559, 719
Tsp45I	GTSAC	3 cut(s)	398, 641, 669
TspDTI	ATGAA	6 cut(s)	300, 356, 504, 680, 764, 854
TspGWI	ACGGA	1 cut(s)	670
TspRI	CASTG	3 cut(s)	76, 342, 931
XcmI	CCANNNNNNNNNTGG	1 cut(s)	923
XmiI	GTMKAC	1 cut(s)	777
XspI	CTAG	2 cut(s)	126, 210
ZraI	GACGTC	1 cut(s)	876
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.