Rh7AG131100

lysM domain receptor-like kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
10466042 .. 10468650
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG131100.1

Sequence Viewer

Length: 1812 bp
ATGGAAATGGCTTCCCTGAACTTTCTCTTCATTCTCTTCACCATTTTGTACGCTTCCGTCCTCTCTGCCAGTGATGGTGTTGGCGCCGAGCCAATTCACATATACCCTTTTACTTGCTCTGCTTCTCATCACATCCGGAGCTGCAATTCCAAGCTGTATCACATTTCTACAGGCCATCAAATTGAAGAAATAGCCTATTTTTACAAGGTGAATGTATCCCAGCTTGAGCCCATAAACCGTGATCAAAGTCAAAAGGACTATCTTGTATCTGTGCCTTGCAGTTGTAAGGACATTGATGGCACACAAATGTACGTGTATGATACCAATTATCCAGTTCAATCAGGGGACACATTTGAGAGAGTTGCAGGCGAGTTTTACAGTAGCCAAGCCTTGAGGGGGGAAGGCAATTTGAGCACCATACACCTTGTTTGTGGCTGCGTGAAGAAAAAGTCGCAGGAGGTTGTGACATACACAGTTCAAGAGCATGACACTTTATCAGGAATTGGACATCTTCTAGATGCATACGAGTCTGAAATTAAGACATACAATAGAAACTTTACTAAAGATCCGAGTTTTCTAGATGTAGGTTGGGTGTTGTATGTGCCGAAGAATGGACTTCGAGCTAACAAGAAAGGAAAAAGACTCAAGGTGTCTATAGTCATAGGTGTATCGTCCGCTGTTTGTTTTGTTTTGGTGGCCGCCTTCATTGTCTTCCTTCTCATGAGAAATAGGATCTGTAGGAACCTAGGTGATGATGTGCACCTTGTAAACTCAAGTGCGAAGAAACGTTCCTCGCTGAAGCAACAGTTTTTTAAAAAGGAAATGGAAGAAACTTTTGAGAATGATAGACCTGTTATATATACTATGGAGGAGATCAAAGAGGCTACAAATAACTTTGACGATACCAGAAAGATTGGGGAGGGTGGATACGGTTGTGTTTACTTTGCCATAATAGGAGAAGTAAAAGTTGCAATTAAGAATATGAGATCTACCAGAGCAAAAGAATTCTTCGCTGAGCTCAAGGTGTTATGCAAGATACATCATAACAATGTGGTGGAGCTGCTAGGATATGCTAGTGGAAGTGAACATCTTTGTTTGGTATATGAGTTTGTTCAGAATGGATCTCTTAACGACCATCTTCATGATCCATTGTTGAAAGGTCGCCAACCTCTTTCATGGACTGCAAGAGCACAGATAGCACTGGATACTGCAAGAGGGATTGAATACATTCATGATCACACGAAGAAACGCTATGTCCACCGTGATATCAAAACGAGTAATATTCTACTTGATGAAGGACTCAGAGCCAAGGTAGCAGATTTTGGGCTAGCAAGGTTAGTGGAACGGTCTAATGAAGAAGATATCGTTGCAACTCGTGTAGTTGGAACACCCGGTTACATTCCTCCTGAATCGGTGCGGGAGCTACAAATGACATCAAAAGGTGATGTATATGCATTCGGAGTGGTTATGGGAGAGCTAATAACTGGTCAGCGTGCCATTGTTCGTGACAACCGAGAGCCAAAAAGGATGAAATCACTTGTCTCAGTTTTACTAGAAGTATTCCAAGATAATGATCCAGAGATTGCTTTGGAAGCTAAAATAGATGGTAATTTGAAAGGAAGCTACCCCATGGAAGAAGTCTACAAGATGGGAGAAATAGCAAGATGGTGTTCGAGTGAAGATCCAGTAAATCGGCCAGAGATGCATGAGATTGTACAATCACTCTCCCAAATTTTGATGTCCTCAATAGAATGGGAAGCATCCCTTGGAGGGAAGAGTGAGGTCTTCAGTGGATTATTCAGTGGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

603

Amino Acids

67.91

Weight (kDa)

6.25

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 300 - 574 5.5e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 302 - 575 5.3e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AccI GTMKAC 1 cut(s) 1641
AccIII TCCGGA 1 cut(s) 135
AciI CCGC 3 cut(s) 675, 699, 1417
AclI AACGTT 1 cut(s) 787
AclWI GGATC 6 cut(s) 560, 740, 1129, 1139, 1568, 1676
AcoI YGGCCR 2 cut(s) 696, 1694
AcsI RAATTY 2 cut(s) 1004, 1731
AcuI CTGAAG 2 cut(s) 818, 1771
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 3 cut(s) 50, 311, 1716
AfiI CCNNNNNNNGG 3 cut(s) 396, 611, 1770
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 6 cut(s) 185, 338, 479, 1156, 1223, 1615
AjuI GAANNNNNNNTTGG 2 cut(s) 1749, 1781
Alw21I GWGCWC 4 cut(s) 416, 762, 1020, 1192
Alw26I GTCTC 1 cut(s) 1546
Alw44I GTGCAC 1 cut(s) 758
AlwI GGATC 6 cut(s) 560, 740, 1129, 1139, 1568, 1676
Aor13HI TCCGGA 1 cut(s) 135
AoxI GGCC 3 cut(s) 172, 696, 1694
ApaLI GTGCAC 1 cut(s) 758
ApeKI GCWGC 3 cut(s) 141, 435, 1060
ApoI RAATTY 2 cut(s) 1004, 1731
Asp700I GAANNNNTTC 1 cut(s) 1227
AspA2I CCTAGG 1 cut(s) 745
AspLEI GCGC 1 cut(s) 86
AsuC2I CCSGG 1 cut(s) 1392
AsuHPI GGTGA 4 cut(s) 31, 220, 761, 1454
AsuNHI GCTAGC 1 cut(s) 1327
AvrII CCTAGG 1 cut(s) 745
BaeGI GKGCMC 1 cut(s) 762
BaeI ACNNNNGTAYC 2 cut(s) 919, 952
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 231, 1020
BauI CACGAG 1 cut(s) 1374
BbsI GAAGAC 2 cut(s) 703, 1777
Bbv12I GWGCWC 4 cut(s) 416, 762, 1020, 1192
BbvI GCAGC 3 cut(s) 128, 422, 1047
BccI CCATC 7 cut(s) 68, 183, 290, 1143, 1598, 1642, 1659
BciVI GTATCC 3 cut(s) 226, 920, 1198
BclI TGATCA 2 cut(s) 241, 1234
BcnI CCSGG 1 cut(s) 1392
BcoDI GTCTC 1 cut(s) 1546
BfaI CTAG 7 cut(s) 515, 578, 746, 1064, 1074, 1328, 1553
BfmI CTRYAG 3 cut(s) 168, 654, 736
BfoI RGCGCY 1 cut(s) 87
BfuI GTATCC 3 cut(s) 226, 920, 1198
BglII AGATCT 1 cut(s) 986
BisI GCNGC 4 cut(s) 142, 436, 699, 1061
BlnI CCTAGG 1 cut(s) 745
BlpI GCTNAGC 1 cut(s) 1014
BlsI GCNGC 4 cut(s) 143, 437, 700, 1062
Bme1390I CCNGG 1 cut(s) 1392
BmiI GGNNCC 2 cut(s) 85, 743
BmrFI CCNGG 1 cut(s) 1392
BmsI GCATC 3 cut(s) 508, 1692, 1769
BmtI GCTAGC 1 cut(s) 1331
BpiI GAAGAC 2 cut(s) 703, 1777
Bpu1102I GCTNAGC 1 cut(s) 1014
BpuEI CTTGAG 5 cut(s) 245, 412, 629, 757, 1004
BpuMI CCSGG 1 cut(s) 1392
BsaAI YACGTR 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 1572
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 4 cut(s) 745, 1308, 1629, 1765
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 3 cut(s) 396, 611, 1770
Bse1I ACTGG 5 cut(s) 69, 332, 1206, 1489, 1685
Bse8I GATNNNNATC 1 cut(s) 1572
BseAI TCCGGA 1 cut(s) 135
BseDI CCNNGG 4 cut(s) 745, 1308, 1629, 1765
BseGI GGATG 3 cut(s) 132, 1533, 1760
BseJI GATNNNNATC 1 cut(s) 1572
BseLI CCNNNNNNNGG 3 cut(s) 396, 611, 1770
BseMII CTCAG 3 cut(s) 1005, 1315, 1557
BseNI ACTGG 5 cut(s) 69, 332, 1206, 1489, 1685
BseRI GAGGAG 1 cut(s) 884
BseSI GKGCMC 1 cut(s) 762
BseXI GCAGC 3 cut(s) 128, 422, 1047
BseYI CCCAGC 1 cut(s) 219
BshFI GGCC 3 cut(s) 174, 698, 1696
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 4 cut(s) 416, 762, 1020, 1192
BsiSI CCGG 2 cut(s) 136, 1392
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 3 cut(s) 396, 611, 1770
BsmAI GTCTC 1 cut(s) 1546
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 1454
BsnI GGCC 3 cut(s) 174, 698, 1696
Bsp1286I GDGCHC 5 cut(s) 231, 416, 762, 1020, 1192
Bsp13I TCCGGA 1 cut(s) 135
Bsp1407I TGTACA 1 cut(s) 1714
Bsp1720I GCTNAGC 1 cut(s) 1014
Bsp19I CCATGG 1 cut(s) 1629
BspACI CCGC 3 cut(s) 675, 699, 1417
BspANI GGCC 3 cut(s) 174, 698, 1696
BspCNI CTCAG 3 cut(s) 1006, 1314, 1556
BspEI TCCGGA 1 cut(s) 135
BspHI TCATGA 3 cut(s) 720, 1141, 1231
BspLI GGNNCC 2 cut(s) 85, 743
BspOI GCTAGC 1 cut(s) 1331
BspPI GGATC 6 cut(s) 560, 740, 1129, 1139, 1568, 1676
BspT107I GGYRCC 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 1714
BsrI ACTGG 5 cut(s) 69, 332, 1206, 1489, 1685
BssECI CCNNGG 4 cut(s) 745, 1308, 1629, 1765
BssNI GRCGYC 1 cut(s) 84
BssSI CACGAG 1 cut(s) 1374
BssT1I CCWWGG 4 cut(s) 745, 1308, 1629, 1765
Bst2BI CACGAG 1 cut(s) 1374
Bst4CI ACNGT 7 cut(s) 239, 380, 475, 807, 932, 1262, 1347
Bst6I CTCTTC 3 cut(s) 32, 41, 1769
BstACI GRCGYC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 1714
BstBAI YACGTR 1 cut(s) 313
BstC8I GCNNGC 3 cut(s) 367, 1329, 1494
BstDEI CTNAG 3 cut(s) 1014, 1301, 1543
BstDSI CCRYGG 1 cut(s) 1629
BstF5I GGATG 3 cut(s) 132, 1533, 1760
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstMAI GTCTC 1 cut(s) 1546
BstMWI GCNNNNNNNGC 5 cut(s) 411, 1196, 1313, 1592, 1702
BstSCI CCNGG 1 cut(s) 1390
BstSFI CTRYAG 3 cut(s) 168, 654, 736
BstSLI GKGCMC 1 cut(s) 762
BstV1I GCAGC 3 cut(s) 128, 422, 1047
BstV2I GAAGAC 2 cut(s) 703, 1777
BstX2I RGATCY 5 cut(s) 565, 732, 986, 1121, 1681
BstYI RGATCY 5 cut(s) 565, 732, 986, 1121, 1681
BsuI GTATCC 3 cut(s) 226, 920, 1198
BsuRI GGCC 3 cut(s) 174, 698, 1696
BtgI CCRYGG 1 cut(s) 1629
BtsCI GGATG 3 cut(s) 132, 1533, 1760
BtsIMutI CAGTG 4 cut(s) 76, 1199, 1795, 1807
Cac8I GCNNGC 3 cut(s) 367, 1329, 1494
CciI TCATGA 3 cut(s) 720, 1141, 1231
CfoI GCGC 1 cut(s) 86
Csp6I GTAC 3 cut(s) 49, 310, 1715
CspCI CAANNNNNGTGG 2 cut(s) 1320, 1355
CviAII CATG 7 cut(s) 485, 721, 1142, 1176, 1232, 1630, 1706
CviQI GTAC 3 cut(s) 49, 310, 1715
DdeI CTNAG 3 cut(s) 1014, 1301, 1543
DinI GGCGCC 1 cut(s) 85
DraI TTTAAA 1 cut(s) 814
EaeI YGGCCR 2 cut(s) 696, 1694
Eam1104I CTCTTC 3 cut(s) 32, 41, 1769
EarI CTCTTC 3 cut(s) 32, 41, 1769
Ecl136II GAGCTC 1 cut(s) 1018
Eco130I CCWWGG 4 cut(s) 745, 1308, 1629, 1765
Eco24I GRGCYC 2 cut(s) 231, 1020
Eco32I GATATC 2 cut(s) 1267, 1363
Eco53kI GAGCTC 1 cut(s) 1018
Eco57I CTGAAG 2 cut(s) 818, 1771
EcoICRI GAGCTC 1 cut(s) 1018
EcoRI GAATTC 1 cut(s) 1004
EcoRV GATATC 2 cut(s) 1267, 1363
EcoT14I CCWWGG 4 cut(s) 745, 1308, 1629, 1765
EcoT22I ATGCAT 3 cut(s) 523, 1456, 1707
EcoT38I GRGCYC 2 cut(s) 231, 1020
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
ErhI CCWWGG 4 cut(s) 745, 1308, 1629, 1765
FaeI CATG 7 cut(s) 488, 724, 1145, 1179, 1235, 1633, 1709
FalI AAGNNNNNCTT 2 cut(s) 1749, 1781
FaqI GGGAC 1 cut(s) 359
FatI CATG 7 cut(s) 484, 720, 1141, 1175, 1231, 1629, 1705
FauI CCCGC 1 cut(s) 1410
FbaI TGATCA 2 cut(s) 241, 1234
FblI GTMKAC 1 cut(s) 1641
Fnu4HI GCNGC 4 cut(s) 142, 436, 699, 1061
FokI GGATG 3 cut(s) 119, 1540, 1747
FriOI GRGCYC 2 cut(s) 231, 1020
Fsp4HI GCNGC 4 cut(s) 142, 436, 699, 1061
FspBI CTAG 7 cut(s) 515, 578, 746, 1064, 1074, 1328, 1553
GlaI GCGC 1 cut(s) 85
GluI GCNGC 4 cut(s) 142, 436, 699, 1061
GsaI CCCAGC 1 cut(s) 223
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 3 cut(s) 174, 698, 1696
HapII CCGG 2 cut(s) 136, 1392
HhaI GCGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 7 cut(s) 488, 724, 1145, 1179, 1235, 1633, 1709
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 4 cut(s) 527, 642, 1299, 1409
HpaII CCGG 2 cut(s) 136, 1392
HphI GGTGA 4 cut(s) 31, 220, 761, 1454
Hpy166II GTNNAC 6 cut(s) 760, 769, 940, 1085, 1258, 1642
Hpy188I TCNGA 5 cut(s) 532, 570, 1116, 1304, 1460
Hpy8I GTNNAC 6 cut(s) 760, 769, 940, 1085, 1258, 1642
HpyAV CCTTC 4 cut(s) 395, 712, 725, 1289
HpyCH4III ACNGT 7 cut(s) 239, 380, 475, 807, 932, 1262, 1347
HpyCH4IV ACGT 2 cut(s) 312, 787
HpyF10VI GCNNNNNNNGC 5 cut(s) 411, 1196, 1313, 1592, 1702
HpyF3I CTNAG 3 cut(s) 1014, 1301, 1543
HpySE526I ACGT 2 cut(s) 312, 787
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 7 cut(s) 488, 724, 1145, 1179, 1235, 1633, 1709
HspAI GCGC 1 cut(s) 84
KasI GGCGCC 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 135
Ksp22I TGATCA 2 cut(s) 241, 1234
LmnI GCTCC 3 cut(s) 138, 1057, 1420
Lsp1109I GCAGC 3 cut(s) 128, 422, 1047
LweI GCATC 3 cut(s) 508, 1692, 1769
MaeI CTAG 7 cut(s) 515, 578, 746, 1064, 1074, 1328, 1553
MaeII ACGT 2 cut(s) 312, 787
MaeIII GTNAC 3 cut(s) 463, 1394, 1505
MflI RGATCY 5 cut(s) 565, 732, 986, 1121, 1681
MhlI GDGCHC 5 cut(s) 231, 416, 762, 1020, 1192
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 3 cut(s) 536, 636, 1293
MmeI TCCRAC 1 cut(s) 1363
Mph1103I ATGCAT 3 cut(s) 523, 1456, 1707
MroI TCCGGA 1 cut(s) 135
MroXI GAANNNNTTC 1 cut(s) 1227
MseI TTAA 4 cut(s) 537, 813, 975, 1128
MslI CAYNNNNRTG 3 cut(s) 305, 1047, 1140
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 2 cut(s) 136, 1392
MspR9I CCNGG 1 cut(s) 1392
Mva1269I GAATGC 1 cut(s) 1454
MwoI GCNNNNNNNGC 5 cut(s) 411, 1196, 1313, 1592, 1702
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 1 cut(s) 1392
NcoI CCATGG 1 cut(s) 1629
NheI GCTAGC 1 cut(s) 1327
NlaIII CATG 7 cut(s) 488, 724, 1145, 1179, 1235, 1633, 1709
NlaIV GGNNCC 2 cut(s) 85, 743
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 463, 1505
NsiI ATGCAT 3 cut(s) 523, 1456, 1707
PagI TCATGA 3 cut(s) 720, 1141, 1231
PcsI WCGNNNNNNNCGW 1 cut(s) 1510
PctI GAATGC 1 cut(s) 1454
PdmI GAANNNNTTC 1 cut(s) 1227
PfeI GAWTC 1 cut(s) 1409
PkrI GCNGC 4 cut(s) 143, 437, 700, 1062
PleI GAGTC 3 cut(s) 535, 636, 1293
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 3 cut(s) 535, 636, 1293
Ppu21I YACGTR 1 cut(s) 313
Psp124BI GAGCTC 1 cut(s) 1020
Psp1406I AACGTT 1 cut(s) 787
PspFI CCCAGC 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 85, 743
PsuI RGATCY 5 cut(s) 565, 732, 986, 1121, 1681
RsaI GTAC 3 cut(s) 50, 311, 1716
RsaNI GTAC 3 cut(s) 49, 310, 1715
RseI CAYNNNNRTG 3 cut(s) 305, 1047, 1140
SacI GAGCTC 1 cut(s) 1020
SaqAI TTAA 4 cut(s) 537, 813, 975, 1128
SatI GCNGC 4 cut(s) 142, 436, 699, 1061
SchI GAGTC 3 cut(s) 536, 636, 1293
ScrFI CCNGG 1 cut(s) 1392
SduI GDGCHC 5 cut(s) 231, 416, 762, 1020, 1192
SfaNI GCATC 3 cut(s) 508, 1692, 1769
SfcI CTRYAG 3 cut(s) 168, 654, 736
SfoI GGCGCC 1 cut(s) 85
SmiMI CAYNNNNRTG 3 cut(s) 305, 1047, 1140
SmlI CTYRAG 5 cut(s) 224, 391, 644, 772, 1019
SmoI CTYRAG 5 cut(s) 224, 391, 644, 772, 1019
SsiI CCGC 3 cut(s) 675, 699, 1417
SspDI GGCGCC 1 cut(s) 83
SspI AATATT 1 cut(s) 1282
SspMI CTAG 7 cut(s) 515, 578, 746, 1064, 1074, 1328, 1553
SstI GAGCTC 1 cut(s) 1020
StyD4I CCNGG 1 cut(s) 1390
StyI CCWWGG 4 cut(s) 745, 1308, 1629, 1765
TaaI ACNGT 7 cut(s) 239, 380, 475, 807, 932, 1262, 1347
TaiI ACGT 2 cut(s) 315, 790
TaqI TCGA 2 cut(s) 619, 1673
TatI WGTACW 1 cut(s) 1714
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 1 cut(s) 1409
Tru1I TTAA 4 cut(s) 537, 813, 975, 1128
Tru9I TTAA 4 cut(s) 537, 813, 975, 1128
TscAI CASTG 4 cut(s) 76, 1206, 1795, 1807
TseFI GTSAC 2 cut(s) 463, 1505
TseI GCWGC 3 cut(s) 141, 435, 1060
Tsp45I GTSAC 2 cut(s) 463, 1505
TspDTI ATGAA 8 cut(s) 19, 694, 1130, 1164, 1220, 1308, 1368, 1544
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 4 cut(s) 76, 1206, 1795, 1807
VneI GTGCAC 1 cut(s) 758
XapI RAATTY 2 cut(s) 1004, 1731
XbaI TCTAGA 2 cut(s) 514, 577
XmaJI CCTAGG 1 cut(s) 745
XmiI GTMKAC 1 cut(s) 1641
XmnI GAANNNNTTC 1 cut(s) 1227
XspI CTAG 7 cut(s) 515, 578, 746, 1064, 1074, 1328, 1553
Zsp2I ATGCAT 3 cut(s) 523, 1456, 1707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.