Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Reverse (-)

30803283 .. 30805020

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGATCAGCTGGCCGCTAGTAGTGTGAAATCGGAACTCATGAAGAGCCCTGAAAAGCGTCCGATTTGCATGATAGAAGTTGATGCTTTGGTTAACAAGTGTGTCAAGAGAAGAAGGAGGGATACATCTACGGCTGTTTCAACAACAGTTAGCAATGCTGTGCCTAACCCTCAATCTAGTACTACCACTACCACTACCACTACTACTACTACTGCCAAAAGAAGTTCCAGATTTCGCGGAGTCAGCAGGCATAGATGGACAGGGAGATATGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGTTTATCTGGGTGCTTATGATGAAGAAGAATCCGCAGCAAGAGCATATGATTTGGCAGCACTCAAGTACTGGGGGACATCAACTTTCACGAACTTTCCGGTGTCTGATTACGAGAGTGAAATTGATCTAATGAACACACTAACAAAAGAAGAATACTTGGCCTCTCTAAGAAGAAGAAGCAGTGGTTTCTCAAGAGGTGTATCCAAGTACAGAGGAGTTGCAAGGCACCATCACAATGGGAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGAAACAAGTATCTGTACCTTGGCACATACGGCACCCAAGAAGAGGCAGCTCATGCCTATGATATTGCAGCGATAGAATACAGAGGCATAAACGCCGTGACCAACTTTGACTTGAGCACATACATAAGATGGCTCAGACCAGCAGGACCCAATCCACTTGTTGCTAATTCTCATGAACAACCAAAACCAAATATTTTAGACTCCAACAACAACAATCCAAGCAAGGAAGAGAGACAGATTCCGATCTTTACTCCGAATAACTCATTCGCAGTAGAGGACATTGACACCGCAAGAACAAGGGACATTTTCCAAATGCAGAACACTATGCCCCCCATCAGTCCTAGTTGCACCCCCAAGTCTTCATGTAATTCCCCAACTGCACTCAGCCTCCTCCTCAAATCCTCCATATTCAAAGAGCTGGTGGAGAAGAATTTGAACGATGAGAATGAAGAAAGTGACGATGAGAAGAGTGACATAATAAAGAACTTGCTCCCGCAGACAAACGGTACTGAAAATCTGAAGAGGATTTTGTATGAAGGGATTCACAACATCCCTTTTTCGTGTGCATCCAACACTGATGCATTGCCTGCTTTAGAGTCCCCGGAGAAGAACATGCTACCATTAAGGAGGCAGTCCCTTTGGAATAATGGTGCCATGAACATGTTCTCTTCTGCTGATTTTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

429

Amino Acids

48.29

Weight (kDa)

8.89

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	76 - 135	1.7e-11	AP2 domain
AP2	PF00847	178 - 229	2.1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	555, 632, 1250
AccII	CGCG	1 cut(s)	237
AciI	CCGC	5 cut(s)	15, 237, 363, 888, 1094
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	1030
AcuI	CTGAAG	1 cut(s)	1139
AfaI	GTAC	5 cut(s)	181, 398, 539, 617, 1108
AfiI	CCNNNNNNNGG	1 cut(s)	643
AflIII	ACRYGT	1 cut(s)	1260
AgsI	TTSAA	3 cut(s)	141, 1012, 1036
AhdI	GACNNNNNGTC	1 cut(s)	292
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	4 cut(s)	10, 275, 650, 1018
AluI	AGCT	4 cut(s)	10, 275, 650, 1018
Alw21I	GWGCWC	1 cut(s)	719
Alw26I	GTCTC	1 cut(s)	826
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	2 cut(s)	12, 489
ApeKI	GCWGC	4 cut(s)	365, 386, 647, 668
ApoI	RAATTY	1 cut(s)	1030
Asp700I	GAANNNNTTC	2 cut(s)	1140, 1262
AspS9I	GGNCC	1 cut(s)	746
AsuC2I	CCSGG	1 cut(s)	1202
AvaII	GGWCC	1 cut(s)	746
BanI	GGYRCC	3 cut(s)	555, 632, 1250
BanII	GRGCYC	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	1 cut(s)	719
BbvI	GCAGC	4 cut(s)	377, 398, 659, 680
BccI	CCATC	5 cut(s)	249, 567, 567, 723, 941
BceAI	ACGGC	3 cut(s)	147, 646, 680
BciVI	GTATCC	2 cut(s)	115, 541
BcnI	CCSGG	1 cut(s)	1202
BcoDI	GTCTC	1 cut(s)	826
BfaI	CTAG	3 cut(s)	18, 177, 942
BfuI	GTATCC	2 cut(s)	115, 541
BisI	GCNGC	5 cut(s)	15, 366, 387, 648, 669
BlsI	GCNGC	5 cut(s)	16, 367, 388, 649, 670
BmcAI	AGTACT	2 cut(s)	181, 398
Bme1390I	CCNGG	1 cut(s)	1202
Bme18I	GGWCC	1 cut(s)	746
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	4 cut(s)	557, 634, 748, 1252
BmrFI	CCNGG	1 cut(s)	1202
BmrI	ACTGGG	1 cut(s)	409
BmsI	GCATC	3 cut(s)	73, 1168, 1175
BmuI	ACTGGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	951
BpuEI	CTTGAG	3 cut(s)	377, 505, 733
BpuMI	CCSGG	1 cut(s)	1202
BsaBI	GATNNNNATC	1 cut(s)	842
BsaJI	CCNNGG	2 cut(s)	619, 1200
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	972, 1002
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	2 cut(s)	160, 1181
Bse8I	GATNNNNATC	1 cut(s)	842
BseDI	CCNNGG	2 cut(s)	619, 1200
BseGI	GGATG	2 cut(s)	1149, 1166
BseJI	GATNNNNATC	1 cut(s)	842
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMI	GCAATG	2 cut(s)	160, 1181
BseMII	CTCAG	2 cut(s)	748, 997
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	3 cut(s)	558, 980, 983
BseXI	GCAGC	4 cut(s)	377, 398, 659, 680
BsgI	GTGCAG	1 cut(s)	963
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	14, 491
BshNI	GGYRCC	3 cut(s)	555, 632, 1250
BsiHKAI	GWGCWC	1 cut(s)	719
BsiSI	CCGG	2 cut(s)	428, 1202
BslFI	GGGAC	5 cut(s)	299, 418, 914, 1183, 1219
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	1 cut(s)	826
BsmFI	GGGAC	5 cut(s)	299, 418, 914, 1183, 1219
BsnI	GGCC	2 cut(s)	14, 491
Bsp1286I	GDGCHC	2 cut(s)	50, 719
Bsp143I	GATC	3 cut(s)	4, 454, 843
BspACI	CCGC	5 cut(s)	15, 237, 363, 888, 1094
BspANI	GGCC	2 cut(s)	14, 491
BspCNI	CTCAG	2 cut(s)	747, 996
BspFNI	CGCG	1 cut(s)	237
BspHI	TCATGA	2 cut(s)	39, 772
BspLI	GGNNCC	4 cut(s)	557, 634, 748, 1252
BspPI	GGATC	1 cut(s)	12
BspQI	GCTCTTC	1 cut(s)	38
BspT107I	GGYRCC	3 cut(s)	555, 632, 1250
BsrDI	GCAATG	2 cut(s)	160, 1181
BsrI	ACTGG	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	619, 1200
BssMI	GATC	3 cut(s)	4, 454, 843
BssT1I	CCWWGG	1 cut(s)	619
Bst4CI	ACNGT	2 cut(s)	148, 1106
Bst6I	CTCTTC	6 cut(s)	38, 636, 822, 1061, 1115, 1273
BstAPI	GCANNNNNTGC	2 cut(s)	653, 1187
BstC8I	GCNNGC	3 cut(s)	12, 248, 1188
BstDEI	CTNAG	3 cut(s)	497, 734, 983
BstF5I	GGATG	2 cut(s)	1149, 1166
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	3 cut(s)	7, 457, 846
BstMAI	GTCTC	1 cut(s)	826
BstMBI	GATC	3 cut(s)	4, 454, 843
BstMWI	GCNNNNNNNGC	5 cut(s)	243, 371, 630, 653, 1187
BstNSI	RCATGY	2 cut(s)	1216, 1264
BstSCI	CCNGG	1 cut(s)	1200
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	377, 398, 659, 680
BstV2I	GAAGAC	1 cut(s)	951
BstXI	CCANNNNNNTGG	1 cut(s)	566
BsuI	GTATCC	2 cut(s)	115, 541
BsuRI	GGCC	2 cut(s)	14, 491
BtsCI	GGATG	2 cut(s)	1149, 1166
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	3 cut(s)	517, 1173, 1282
Cac8I	GCNNGC	3 cut(s)	12, 248, 1188
CciI	TCATGA	2 cut(s)	39, 772
Cfr13I	GGNCC	1 cut(s)	746
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	5 cut(s)	180, 397, 538, 616, 1107
CviAII	CATG	8 cut(s)	40, 70, 653, 773, 963, 1213, 1255, 1261
CviQI	GTAC	5 cut(s)	180, 397, 538, 616, 1107
DdeI	CTNAG	3 cut(s)	497, 734, 983
DpnI	GATC	3 cut(s)	6, 456, 845
DpnII	GATC	3 cut(s)	4, 454, 843
DriI	GACNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	6 cut(s)	38, 636, 822, 1061, 1115, 1273
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	6 cut(s)	38, 636, 822, 1061, 1115, 1273
Eco130I	CCWWGG	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	746
Eco57I	CTGAAG	1 cut(s)	1139
EcoO109I	RGGNCCY	1 cut(s)	746
EcoT14I	CCWWGG	1 cut(s)	619
EcoT22I	ATGCAT	1 cut(s)	1183
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	619
FaeI	CATG	8 cut(s)	43, 73, 656, 776, 966, 1216, 1258, 1264
FaqI	GGGAC	5 cut(s)	299, 418, 914, 1183, 1219
FatI	CATG	8 cut(s)	39, 69, 652, 772, 962, 1212, 1254, 1260
FauI	CCCGC	1 cut(s)	1101
FauNDI	CATATG	1 cut(s)	376
Fnu4HI	GCNGC	5 cut(s)	15, 366, 387, 648, 669
FokI	GGATG	2 cut(s)	1136, 1153
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	5 cut(s)	15, 366, 387, 648, 669
FspBI	CTAG	3 cut(s)	18, 177, 942
GluI	GCNGC	5 cut(s)	15, 366, 387, 648, 669
HaeIII	GGCC	2 cut(s)	14, 491
HapII	CCGG	2 cut(s)	428, 1202
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	8 cut(s)	43, 73, 656, 776, 966, 1216, 1258, 1264
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	7 cut(s)	240, 301, 359, 800, 838, 1141, 1196
HpaI	GTTAAC	1 cut(s)	94
HpaII	CCGG	2 cut(s)	428, 1202
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	7 cut(s)	34, 63, 436, 737, 843, 855, 1119
Hpy188III	TCNNGA	6 cut(s)	40, 106, 228, 418, 522, 773
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	108, 313, 1130
HpyCH4III	ACNGT	2 cut(s)	148, 1106
HpyCH4V	TGCA	8 cut(s)	69, 551, 668, 916, 948, 980, 1166, 1181
HpyF10VI	GCNNNNNNNGC	5 cut(s)	243, 371, 630, 653, 1187
HpyF3I	CTNAG	3 cut(s)	497, 734, 983
Hsp92II	CATG	8 cut(s)	43, 73, 656, 776, 966, 1216, 1258, 1264
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	4, 454, 843
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	1095
Lsp1109I	GCAGC	4 cut(s)	377, 398, 659, 680
LweI	GCATC	3 cut(s)	73, 1168, 1175
MaeI	CTAG	3 cut(s)	18, 177, 942
MaeIII	GTNAC	3 cut(s)	697, 1055, 1070
MalI	GATC	3 cut(s)	6, 456, 845
MboI	GATC	3 cut(s)	4, 454, 843
MhlI	GDGCHC	2 cut(s)	50, 719
MluCI	AATT	4 cut(s)	450, 766, 967, 1030
MlyI	GAGTC	3 cut(s)	249, 794, 1205
MmeI	TCCRAC	3 cut(s)	329, 828, 1194
Mph1103I	ATGCAT	1 cut(s)	1183
MroXI	GAANNNNTTC	2 cut(s)	1140, 1262
MseI	TTAA	2 cut(s)	93, 1223
MslI	CAYNNNNRTG	3 cut(s)	564, 657, 1259
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	2 cut(s)	428, 1202
MspR9I	CCNGG	1 cut(s)	1202
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	243, 371, 630, 653, 1187
NciI	CCSGG	1 cut(s)	1202
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	3 cut(s)	4, 454, 843
NlaIII	CATG	8 cut(s)	43, 73, 656, 776, 966, 1216, 1258, 1264
NlaIV	GGNNCC	4 cut(s)	557, 634, 748, 1252
NmuCI	GTSAC	3 cut(s)	697, 1055, 1070
NsiI	ATGCAT	1 cut(s)	1183
NspI	RCATGY	2 cut(s)	1216, 1264
PagI	TCATGA	2 cut(s)	39, 772
PciI	ACATGT	1 cut(s)	1260
PciSI	GCTCTTC	1 cut(s)	38
PdmI	GAANNNNTTC	2 cut(s)	1140, 1262
PfeI	GAWTC	4 cut(s)	301, 359, 838, 1141
PkrI	GCNGC	5 cut(s)	16, 367, 388, 649, 670
PleI	GAGTC	3 cut(s)	248, 794, 1204
PpsI	GAGTC	3 cut(s)	248, 794, 1204
PpuMI	RGGWCCY	1 cut(s)	746
PscI	ACATGT	1 cut(s)	1260
Psp5II	RGGWCCY	1 cut(s)	746
PspN4I	GGNNCC	4 cut(s)	557, 634, 748, 1252
PspPI	GGNCC	1 cut(s)	746
PspPPI	RGGWCCY	1 cut(s)	746
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	5 cut(s)	181, 398, 539, 617, 1108
RsaNI	GTAC	5 cut(s)	180, 397, 538, 616, 1107
RseI	CAYNNNNRTG	3 cut(s)	564, 657, 1259
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	93, 1223
SatI	GCNGC	5 cut(s)	15, 366, 387, 648, 669
Sau3AI	GATC	3 cut(s)	4, 454, 843
Sau96I	GGNCC	1 cut(s)	746
ScaI	AGTACT	2 cut(s)	181, 398
SchI	GAGTC	3 cut(s)	249, 794, 1205
ScrFI	CCNGG	1 cut(s)	1202
SduI	GDGCHC	2 cut(s)	50, 719
SetI	ASST	6 cut(s)	12, 277, 529, 621, 652, 1020
SfaNI	GCATC	3 cut(s)	73, 1168, 1175
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	3 cut(s)	564, 657, 1259
SmlI	CTYRAG	3 cut(s)	392, 520, 712
SmoI	CTYRAG	3 cut(s)	392, 520, 712
Sse9I	AATT	4 cut(s)	450, 766, 967, 1030
SsiI	CCGC	5 cut(s)	15, 237, 363, 888, 1094
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	3 cut(s)	18, 177, 942
StyD4I	CCNGG	1 cut(s)	1200
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	2 cut(s)	148, 1106
TasI	AATT	4 cut(s)	450, 766, 967, 1030
TatI	WGTACW	3 cut(s)	179, 396, 537
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	4 cut(s)	301, 359, 838, 1141
Tru1I	TTAA	2 cut(s)	93, 1223
Tru9I	TTAA	2 cut(s)	93, 1223
TscAI	CASTG	2 cut(s)	517, 1180
TseFI	GTSAC	3 cut(s)	697, 1055, 1070
TseI	GCWGC	4 cut(s)	365, 386, 647, 668
Tsp45I	GTSAC	3 cut(s)	697, 1055, 1070
TspDTI	ATGAA	9 cut(s)	56, 285, 366, 476, 789, 951, 1062, 1149, 1271
TspRI	CASTG	2 cut(s)	517, 1180
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	1 cut(s)	1030
XceI	RCATGY	2 cut(s)	1216, 1264
XmnI	GAANNNNTTC	2 cut(s)	1140, 1262
XspI	CTAG	3 cut(s)	18, 177, 942
ZrmI	AGTACT	2 cut(s)	181, 398
Zsp2I	ATGCAT	1 cut(s)	1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.