Rh2AG608500

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
83566421 .. 83568737
2317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG608500.1

Sequence Viewer

Length: 1407 bp
ATGAAGACAAAACAAGCTCACAAGTTAATGAAGTTATATATACACTCAAAACATCCTTCCAATTCAGGCAGCCACAGAACAGAAGAACAAGCATTGAGTTTTAACAGAAAGGAGAGGAAGTTCAGAAAATTCATCTGCTTACAAGAGATGGATCAGCAGCTGATGATGGTGAAGAATGAAGAGACCCCAGCTGGGAGGCGCCGCTTGAGCACCGCTGATCGCGAGGCAAACCAGGCAGCGCGGTGTGTCAAGAGACGCCGAAGAGACCCAGCTGCTGTTGCTGTTGACATTAGCAAGAGTGAGCTGCCTCTGCCAGAAAAGCCAGCCGATCCAGCTTCTGCAGCTACCACAATGAAGAGAAGCTCAAGGTTTCGCGGCGTCAGCAGACATAGGTGGACTGGCCGATTTGAAGCTCATTTGTGGGACAAGCTTTCTTGGAATATAACACAGAAGAAGAAAGGGAAACAAGTCTACCTTGGGGCATATGATGAAGAAGAGTCTGCTGCAAGAGCCTATGATTTAGCTGCACTCAAGTACTGGGGAACCTCAACTTTCACAAACTTCCCGATATCAGACTATGAGAACGAAATTGAGATCATGCAATCTGTAACAAAAGAAGAATATCTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTGTCCAAGTACAGAGGAGTAGCAAGGCACCATCACAATGGCAGATGGGAAGCAAGAATCGGTAGAGTTTTCGGAAACAAGTACCTCTACCTTGGCACTTACAGCACCCAAGAGGAAGCAGCTCGCGCCTATGACATTGCGGCAATTGAGTACAGAGGGATCAATGCTGTGACCAACTTCGACTTGAGCTCTTACATTAGATGGTTAAAGCCAAAAGTAGACAGCACAATAGCAGCTCAAGAATTAGAGACAGTTGCAGAGCCTGAGAATATCCCATTCATGGCCAGCAACTACATCCCAACAGAGGAATCCCCCTTGTCACATACAAACCCTTTTGCCTCTGACTACTTGACCTCGCCAAAGCAAGAATTGTCCAGGAGCAACTTCCCTCTCGACTCAAGCAGCAAGTCATCCTCTCCAACCGCACTTGGCCTCCTCCTTCAGTCTTCTATATTCAGAGAACTGGTTCAGAAGAACTCGAATTACTCGGAGGATGAAAGCACCGATGGAGAAGAACAAAAGAACCAAGCACAAGGTGGGAGTGACGACGAGTATGGTGGACCTTTTTCATATGACCGAATTGGGGCCAATAGCCCGTTTGTTTCCTCTACCAACAGGGAAAGCATAGAACTGCAAGAAAGAGAGCTCCTTCACTCCCCATGGAACAGCTTCGCAAGCACGATGCTGCTTAATCATACAACAAAAGCAGATGCCTCAGAGTCTCTGTTCTTCTTTTCTTAG

Protein Analysis

468

Amino Acids

53.25

Weight (kDa)

8.95

Isoelectric Point (pI)

61.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 122 - 181 3.2e-12 AP2 domain
AP2 PF00847 224 - 275 2.6e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 198, 693
AccI GTMKAC 2 cut(s) 471, 885
AccII CGCG 4 cut(s) 222, 241, 375, 792
AciI CCGC 6 cut(s) 202, 213, 241, 375, 806, 1089
AclWI GGATC 3 cut(s) 159, 323, 833
AcoI YGGCCR 2 cut(s) 400, 948
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 1091
AcyI GRCGYC 3 cut(s) 199, 256, 378
AdeI CACNNNGTG 1 cut(s) 1202
AfaI GTAC 4 cut(s) 536, 677, 749, 818
AfiI CCNNNNNNNGG 4 cut(s) 192, 946, 970, 1249
AgsI TTSAA 2 cut(s) 410, 660
AjnI CCWGG 2 cut(s) 231, 1040
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
Alw21I GWGCWC 3 cut(s) 212, 857, 1314
Alw26I GTCTC 5 cut(s) 176, 247, 258, 908, 1392
AlwI GGATC 3 cut(s) 159, 323, 833
AlwNI CAGNNNCTG 4 cut(s) 160, 275, 338, 929
AoxI GGCC 5 cut(s) 400, 627, 948, 1096, 1251
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 2 cut(s) 1131, 1334
AspLEI GCGC 3 cut(s) 201, 241, 794
AspS9I GGNCC 2 cut(s) 1226, 1251
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 1226
BalI TGGCCA 1 cut(s) 950
BanI GGYRCC 2 cut(s) 198, 693
BanII GRGCYC 2 cut(s) 857, 1314
BbsI GAAGAC 2 cut(s) 11, 1104
Bbv12I GWGCWC 3 cut(s) 212, 857, 1314
BccI CCATC 6 cut(s) 142, 160, 705, 705, 861, 1166
BciT130I CCWGG 2 cut(s) 233, 1042
BcoDI GTCTC 5 cut(s) 176, 247, 258, 908, 1392
BfmI CTRYAG 1 cut(s) 339
BfoI RGCGCY 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 2 cut(s) 233, 1042
Bme18I GGWCC 1 cut(s) 1226
BmgT120I GGNCC 2 cut(s) 1226, 1251
BmiI GGNNCC 4 cut(s) 200, 544, 695, 1252
BmrFI CCNGG 2 cut(s) 233, 1042
BmrI ACTGGG 1 cut(s) 547
BmsI GCATC 2 cut(s) 1338, 1366
BmuI ACTGGG 1 cut(s) 547
BpiI GAAGAC 2 cut(s) 11, 1104
BpuEI CTTGAG 6 cut(s) 226, 349, 515, 871, 888, 1048
BsaHI GRCGYC 3 cut(s) 199, 256, 378
BsaI GGTCTC 2 cut(s) 176, 258
BsaJI CCNNGG 3 cut(s) 475, 757, 1325
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 1083, 1113
Bsc4I CCNNNNNNNGG 4 cut(s) 192, 946, 970, 1249
Bse1I ACTGG 3 cut(s) 403, 542, 1134
Bse3DI GCAATG 1 cut(s) 801
BseBI CCWGG 2 cut(s) 233, 1042
BseDI CCNNGG 3 cut(s) 475, 757, 1325
BseGI GGATG 4 cut(s) 52, 960, 1076, 1165
BseLI CCNNNNNNNGG 4 cut(s) 192, 946, 970, 1249
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 2 cut(s) 921, 1395
BseNI ACTGG 3 cut(s) 403, 542, 1134
BseRI GAGGAG 2 cut(s) 696, 1091
BseYI CCCAGC 3 cut(s) 187, 191, 268
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 4 cut(s) 222, 241, 375, 792
BshFI GGCC 5 cut(s) 402, 629, 950, 1098, 1253
BshNI GGYRCC 2 cut(s) 198, 693
BsiHKAI GWGCWC 3 cut(s) 212, 857, 1314
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 4 cut(s) 192, 946, 970, 1249
BsmAI GTCTC 5 cut(s) 176, 247, 258, 908, 1392
BsmBI CGTCTC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 5 cut(s) 402, 629, 950, 1098, 1253
Bso31I GGTCTC 2 cut(s) 176, 258
Bsp1286I GDGCHC 3 cut(s) 212, 857, 1314
Bsp143I GATC 5 cut(s) 151, 217, 328, 594, 825
Bsp19I CCATGG 1 cut(s) 1325
Bsp68I TCGCGA 1 cut(s) 222
BspACI CCGC 6 cut(s) 202, 213, 241, 375, 806, 1089
BspANI GGCC 5 cut(s) 402, 629, 950, 1098, 1253
BspCNI CTCAG 2 cut(s) 922, 1394
BspFNI CGCG 4 cut(s) 222, 241, 375, 792
BspLI GGNNCC 4 cut(s) 200, 544, 695, 1252
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 3 cut(s) 159, 323, 833
BspT107I GGYRCC 2 cut(s) 198, 693
BspTNI GGTCTC 2 cut(s) 176, 258
BsrDI GCAATG 1 cut(s) 801
BsrI ACTGG 3 cut(s) 403, 542, 1134
BssECI CCNNGG 3 cut(s) 475, 757, 1325
BssMI GATC 5 cut(s) 151, 217, 328, 594, 825
BssNI GRCGYC 3 cut(s) 199, 256, 378
BssT1I CCWWGG 3 cut(s) 475, 757, 1325
Bst2UI CCWGG 2 cut(s) 233, 1042
Bst4CI ACNGT 1 cut(s) 919
Bst6I CTCTTC 4 cut(s) 174, 256, 350, 489
BstACI GRCGYC 3 cut(s) 199, 256, 378
BstC8I GCNNGC 4 cut(s) 324, 790, 952, 1342
BstDEI CTNAG 3 cut(s) 930, 1381, 1404
BstDSI CCRYGG 1 cut(s) 1325
BstF5I GGATG 4 cut(s) 52, 960, 1076, 1165
BstFNI CGCG 4 cut(s) 222, 241, 375, 792
BstH2I RGCGCY 1 cut(s) 202
BstHHI GCGC 3 cut(s) 201, 241, 794
BstKTI GATC 5 cut(s) 154, 220, 331, 597, 828
BstMAI GTCTC 5 cut(s) 176, 247, 258, 908, 1392
BstMBI GATC 5 cut(s) 151, 217, 328, 594, 825
BstNI CCWGG 2 cut(s) 233, 1042
BstSCI CCNGG 2 cut(s) 231, 1040
BstSFI CTRYAG 1 cut(s) 339
BstUI CGCG 4 cut(s) 222, 241, 375, 792
BstV2I GAAGAC 2 cut(s) 11, 1104
BstXI CCANNNNNNTGG 1 cut(s) 704
BsuRI GGCC 5 cut(s) 402, 629, 950, 1098, 1253
BtgI CCRYGG 1 cut(s) 1325
BtsCI GGATG 4 cut(s) 52, 960, 1076, 1165
BtsI GCAGTG 1 cut(s) 655
BtsIMutI CAGTG 1 cut(s) 655
BtuMI TCGCGA 1 cut(s) 222
Cac8I GCNNGC 4 cut(s) 324, 790, 952, 1342
CaiI CAGNNNCTG 4 cut(s) 160, 275, 338, 929
CfoI GCGC 3 cut(s) 201, 241, 794
Cfr13I GGNCC 2 cut(s) 1226, 1251
CseI GACGC 2 cut(s) 264, 367
Csp6I GTAC 4 cut(s) 535, 676, 748, 817
CviAII CATG 3 cut(s) 598, 946, 1326
CviQI GTAC 4 cut(s) 535, 676, 748, 817
DdeI CTNAG 3 cut(s) 930, 1381, 1404
DinI GGCGCC 1 cut(s) 200
DpnI GATC 5 cut(s) 153, 219, 330, 596, 827
DpnII GATC 5 cut(s) 151, 217, 328, 594, 825
DraIII CACNNNGTG 1 cut(s) 1202
EaeI YGGCCR 2 cut(s) 400, 948
Eam1104I CTCTTC 4 cut(s) 174, 256, 350, 489
EarI CTCTTC 4 cut(s) 174, 256, 350, 489
Ecl136II GAGCTC 2 cut(s) 855, 1312
Eco130I CCWWGG 3 cut(s) 475, 757, 1325
Eco24I GRGCYC 2 cut(s) 857, 1314
Eco31I GGTCTC 2 cut(s) 176, 258
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 1226
Eco53kI GAGCTC 2 cut(s) 855, 1312
Eco57I CTGAAG 1 cut(s) 1091
EcoICRI GAGCTC 2 cut(s) 855, 1312
EcoRII CCWGG 2 cut(s) 231, 1040
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 3 cut(s) 475, 757, 1325
EcoT38I GRGCYC 2 cut(s) 857, 1314
EgeI GGCGCC 1 cut(s) 200
EheI GGCGCC 1 cut(s) 200
ErhI CCWWGG 3 cut(s) 475, 757, 1325
Esp3I CGTCTC 1 cut(s) 247
FaeI CATG 3 cut(s) 601, 949, 1329
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 1 cut(s) 437
FatI CATG 3 cut(s) 597, 945, 1325
FauNDI CATATG 2 cut(s) 484, 1237
FblI GTMKAC 2 cut(s) 471, 885
FokI GGATG 4 cut(s) 39, 947, 1063, 1172
FriOI GRGCYC 2 cut(s) 857, 1314
GlaI GCGC 3 cut(s) 200, 240, 793
GsaI CCCAGC 3 cut(s) 191, 195, 272
HaeII RGCGCY 1 cut(s) 202
HaeIII GGCC 5 cut(s) 402, 629, 950, 1098, 1253
HgaI GACGC 2 cut(s) 264, 367
HhaI GCGC 3 cut(s) 201, 241, 794
Hin1I GRCGYC 3 cut(s) 199, 256, 378
Hin1II CATG 3 cut(s) 601, 949, 1329
Hin6I GCGC 3 cut(s) 199, 239, 792
HinP1I GCGC 3 cut(s) 199, 239, 792
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 5 cut(s) 497, 723, 974, 1061, 1385
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 5 cut(s) 286, 396, 472, 886, 1226
Hpy188I TCNGA 8 cut(s) 125, 574, 740, 1009, 1124, 1137, 1156, 1384
Hpy188III TCNNGA 6 cut(s) 221, 250, 565, 660, 905, 1058
Hpy8I GTNNAC 5 cut(s) 286, 396, 472, 886, 1226
Hpy99I CGWCG 1 cut(s) 1217
HpyAV CCTTC 3 cut(s) 66, 1115, 1325
HpyCH4III ACNGT 1 cut(s) 919
HpyCH4V TGCA 6 cut(s) 341, 506, 527, 601, 923, 1300
HpyF3I CTNAG 3 cut(s) 930, 1381, 1404
Hsp92I GRCGYC 3 cut(s) 199, 256, 378
Hsp92II CATG 3 cut(s) 601, 949, 1329
HspAI GCGC 3 cut(s) 199, 239, 792
KasI GGCGCC 1 cut(s) 198
Kzo9I GATC 5 cut(s) 151, 217, 328, 594, 825
LmnI GCTCC 2 cut(s) 1044, 1317
LweI GCATC 2 cut(s) 1338, 1366
MaeIII GTNAC 4 cut(s) 607, 835, 984, 1208
MalI GATC 5 cut(s) 153, 219, 330, 596, 827
MboI GATC 5 cut(s) 151, 217, 328, 594, 825
MfeI CAATTG 1 cut(s) 810
MhlI GDGCHC 3 cut(s) 212, 857, 1314
MlsI TGGCCA 1 cut(s) 950
MluCI AATT 8 cut(s) 61, 128, 588, 810, 908, 1034, 1147, 1245
MluNI TGGCCA 1 cut(s) 950
Mly113I GGCGCC 1 cut(s) 199
MlyI GAGTC 3 cut(s) 506, 1055, 1394
MmeI TCCRAC 1 cut(s) 1109
Mox20I TGGCCA 1 cut(s) 950
MroXI GAANNNNTTC 2 cut(s) 1131, 1334
MscI TGGCCA 1 cut(s) 950
MseI TTAA 5 cut(s) 26, 102, 635, 872, 1356
MslI CAYNNNNRTG 1 cut(s) 702
Msp20I TGGCCA 1 cut(s) 950
MspA1I CMGCKG 4 cut(s) 160, 191, 215, 272
MspR9I CCNGG 2 cut(s) 233, 1042
MunI CAATTG 1 cut(s) 810
MvaI CCWGG 2 cut(s) 233, 1042
MvnI CGCG 4 cut(s) 222, 241, 375, 792
NarI GGCGCC 1 cut(s) 199
NcoI CCATGG 1 cut(s) 1325
NdeI CATATG 2 cut(s) 484, 1237
NdeII GATC 5 cut(s) 151, 217, 328, 594, 825
NlaIII CATG 3 cut(s) 601, 949, 1329
NlaIV GGNNCC 4 cut(s) 200, 544, 695, 1252
NmuCI GTSAC 3 cut(s) 835, 984, 1208
NruI TCGCGA 1 cut(s) 222
PdmI GAANNNNTTC 2 cut(s) 1131, 1334
PfeI GAWTC 2 cut(s) 723, 974
PfoI TCCNGGA 1 cut(s) 1040
PleI GAGTC 3 cut(s) 505, 1055, 1393
PluTI GGCGCC 1 cut(s) 202
PpsI GAGTC 3 cut(s) 505, 1055, 1393
Psp124BI GAGCTC 2 cut(s) 857, 1314
Psp6I CCWGG 2 cut(s) 231, 1040
PspFI CCCAGC 3 cut(s) 187, 191, 268
PspGI CCWGG 2 cut(s) 231, 1040
PspN4I GGNNCC 4 cut(s) 200, 544, 695, 1252
PspPI GGNCC 2 cut(s) 1226, 1251
PsrI GAACNNNNNNTAC 2 cut(s) 1133, 1165
PstI CTGCAG 1 cut(s) 343
PstNI CAGNNNCTG 4 cut(s) 160, 275, 338, 929
PvuII CAGCTG 3 cut(s) 160, 191, 272
RruI TCGCGA 1 cut(s) 222
RsaI GTAC 4 cut(s) 536, 677, 749, 818
RsaNI GTAC 4 cut(s) 535, 676, 748, 817
RseI CAYNNNNRTG 1 cut(s) 702
SacI GAGCTC 2 cut(s) 857, 1314
SaqAI TTAA 5 cut(s) 26, 102, 635, 872, 1356
Sau3AI GATC 5 cut(s) 151, 217, 328, 594, 825
Sau96I GGNCC 2 cut(s) 1226, 1251
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 3 cut(s) 506, 1055, 1394
ScrFI CCNGG 2 cut(s) 233, 1042
SduI GDGCHC 3 cut(s) 212, 857, 1314
SfaNI GCATC 2 cut(s) 1338, 1366
SfcI CTRYAG 1 cut(s) 339
SfoI GGCGCC 1 cut(s) 200
SinI GGWCC 1 cut(s) 1226
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 6 cut(s) 205, 364, 530, 850, 903, 1063
SmoI CTYRAG 6 cut(s) 205, 364, 530, 850, 903, 1063
Sse9I AATT 8 cut(s) 61, 128, 588, 810, 908, 1034, 1147, 1245
SsiI CCGC 6 cut(s) 202, 213, 241, 375, 806, 1089
SspDI GGCGCC 1 cut(s) 198
SstI GAGCTC 2 cut(s) 857, 1314
StyD4I CCNGG 2 cut(s) 231, 1040
StyI CCWWGG 3 cut(s) 475, 757, 1325
TaaI ACNGT 1 cut(s) 919
TaqI TCGA 3 cut(s) 846, 1059, 1145
TaqII GACCGA 1 cut(s) 1257
TasI AATT 8 cut(s) 61, 128, 588, 810, 908, 1034, 1147, 1245
TatI WGTACW 3 cut(s) 534, 675, 816
TauI GCSGC 3 cut(s) 204, 378, 809
TfiI GAWTC 2 cut(s) 723, 974
Tru1I TTAA 5 cut(s) 26, 102, 635, 872, 1356
Tru9I TTAA 5 cut(s) 26, 102, 635, 872, 1356
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 3 cut(s) 835, 984, 1208
Tsp45I GTSAC 3 cut(s) 835, 984, 1208
TspDTI ATGAA 9 cut(s) 17, 44, 121, 192, 368, 504, 934, 1176, 1224
TspRI CASTG 1 cut(s) 655
VpaK11BI GGWCC 1 cut(s) 1226
XapI RAATTY 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 1199
XmiI GTMKAC 2 cut(s) 471, 885
XmnI GAANNNNTTC 2 cut(s) 1131, 1334
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.