Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037701.1

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 614

Gene Structure 614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037701.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 614 bp

aatacagaggcataaacgctgtgaccaactttgacttgagcacatacataagatggctcagaccaggacccagttcacttgttgctaattctcaagaacaaccaaaaccaaatattgctgactccaacagcaacaatccaagcaaggaagagagaccaatgtcaatctttaatccaaataactcattcgcagtagaggacatagacaccacaagaactaggggcattttccaaagacagaatactatgccccccatcagtcctacttgcacccctaagtcatctaattccccaaccgcactcagcctcctcctcaaatcctctatattcaaggagctggtggagaagaatttgaatgatgaaaccgaagaaagtgacgatgagaagagtgatataataaagaacttgctcccgcagacaaacgggactgaaaatctgaagagaattttgtatgaagggattcacaacatccctttttcgtgttcatccaacagggatatgttgcctgctttagagtcccgggagaagaacatgctgccattatgcaattcgagggggcaatccctttggaataatggtgccatcaacatgttctcatccgctgatttcagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

203

Amino Acids

22.73

Weight (kDa)

5.32

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	577
AciI	CCGC	3 cut(s)	296, 412, 599
AcsI	RAATTY	2 cut(s)	348, 443
AcuI	CTGAAG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	587
AgsI	TTSAA	2 cut(s)	330, 354
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	2 cut(s)	336, 611
AluI	AGCT	2 cut(s)	336, 611
Alw21I	GWGCWC	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	518
ApeKI	GCWGC	1 cut(s)	534
ApoI	RAATTY	2 cut(s)	348, 443
Asp700I	GAANNNNTTC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	2 cut(s)	519, 520
AvaI	CYCGRG	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	3 cut(s)	47, 262, 589
BciT130I	CCWGG	1 cut(s)	65
BcnI	CCSGG	2 cut(s)	519, 520
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	218
BisI	GCNGC	1 cut(s)	535
BlsI	GCNGC	1 cut(s)	536
Bme1390I	CCNGG	3 cut(s)	65, 519, 520
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	518
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	2 cut(s)	69, 579
BmrFI	CCNGG	3 cut(s)	65, 519, 520
BmrI	ACTGGG	1 cut(s)	65
BmuI	ACTGGG	1 cut(s)	65
BoxI	GACNNNNGTC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	57, 77
BpuMI	CCSGG	2 cut(s)	519, 520
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bse1I	ACTGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	3 cut(s)	467, 484, 595
BseMII	CTCAG	2 cut(s)	72, 315
BseNI	ACTGG	1 cut(s)	71
BseRI	GAGGAG	2 cut(s)	298, 301
BseXI	GCAGC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	577
BsiHKAI	GWGCWC	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	438, 501
BsmAI	GTCTC	1 cut(s)	147
BsmFI	GGGAC	2 cut(s)	438, 501
Bso31I	GGTCTC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	43
BspACI	CCGC	3 cut(s)	296, 412, 599
BspCNI	CTCAG	2 cut(s)	71, 314
BspLI	GGNNCC	2 cut(s)	69, 579
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	65
Bst6I	CTCTTC	3 cut(s)	143, 379, 433
BstC8I	GCNNGC	1 cut(s)	506
BstDEI	CTNAG	3 cut(s)	58, 275, 301
BstF5I	GGATG	3 cut(s)	467, 484, 595
BstMAI	GTCTC	1 cut(s)	147
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	2 cut(s)	534, 591
BstPAI	GACNNNNGTC	1 cut(s)	159
BstSCI	CCNGG	3 cut(s)	63, 517, 518
BstV1I	GCAGC	1 cut(s)	521
BtsCI	GGATG	3 cut(s)	467, 484, 595
Cac8I	GCNNGC	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	67
Cfr9I	CCCGGG	1 cut(s)	518
CviAII	CATG	2 cut(s)	531, 588
CviJI	RGCY	4 cut(s)	57, 305, 336, 611
CviKI_1	RGCY	4 cut(s)	57, 305, 336, 611
DdeI	CTNAG	3 cut(s)	58, 275, 301
Eam1104I	CTCTTC	3 cut(s)	143, 379, 433
EarI	CTCTTC	3 cut(s)	143, 379, 433
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	518
EcoO109I	RGGNCCY	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	534, 591
FaqI	GGGAC	2 cut(s)	438, 501
FatI	CATG	2 cut(s)	530, 587
FauI	CCCGC	1 cut(s)	419
Fnu4HI	GCNGC	1 cut(s)	535
FokI	GGATG	3 cut(s)	454, 471, 582
Fsp4HI	GCNGC	1 cut(s)	535
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	535
HapII	CCGG	1 cut(s)	519
Hin1II	CATG	2 cut(s)	534, 591
HinfI	GANTC	3 cut(s)	121, 459, 514
HpaII	CCGG	1 cut(s)	519
Hpy166II	GTNNAC	1 cut(s)	76
Hpy188I	TCNGA	2 cut(s)	61, 437
Hpy188III	TCNNGA	1 cut(s)	94
Hpy8I	GTNNAC	1 cut(s)	76
HpyAV	CCTTC	1 cut(s)	448
HpyCH4V	TGCA	2 cut(s)	269, 545
HpyF3I	CTNAG	3 cut(s)	58, 275, 301
Hsp92II	CATG	2 cut(s)	534, 591
LmnI	GCTCC	2 cut(s)	333, 413
LpnPI	CCDG	7 cut(s)	50, 77, 84, 322, 477, 518, 532
Lsp1109I	GCAGC	1 cut(s)	521
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	21, 373
MboII	GAAGA	6 cut(s)	160, 357, 379, 396, 450, 537
MhlI	GDGCHC	1 cut(s)	43
MluCI	AATT	5 cut(s)	87, 285, 348, 443, 546
MlyI	GAGTC	2 cut(s)	115, 523
MmeI	TCCRAC	2 cut(s)	149, 512
MnlI	CCTC	6 cut(s)	189, 316, 319, 322, 330, 545
MroXI	GAANNNNTTC	1 cut(s)	458
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	586
MspA1I	CMGCKG	2 cut(s)	601, 611
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	3 cut(s)	65, 519, 520
MvaI	CCWGG	1 cut(s)	65
NciI	CCSGG	2 cut(s)	519, 520
NlaIII	CATG	2 cut(s)	534, 591
NlaIV	GGNNCC	2 cut(s)	69, 579
NmuCI	GTSAC	2 cut(s)	21, 373
NspI	RCATGY	2 cut(s)	534, 591
PciI	ACATGT	1 cut(s)	587
PdmI	GAANNNNTTC	1 cut(s)	458
PfeI	GAWTC	1 cut(s)	459
PkrI	GCNGC	1 cut(s)	536
PleI	GAGTC	2 cut(s)	115, 522
PpsI	GAGTC	2 cut(s)	115, 522
PpuMI	RGGWCCY	1 cut(s)	67
PscI	ACATGT	1 cut(s)	587
PshAI	GACNNNNGTC	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	69, 579
PspPI	GGNCC	1 cut(s)	67
PspPPI	RGGWCCY	1 cut(s)	67
PvuII	CAGCTG	1 cut(s)	611
RseI	CAYNNNNRTG	1 cut(s)	586
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	535
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	2 cut(s)	115, 523
ScrFI	CCNGG	3 cut(s)	65, 519, 520
SduI	GDGCHC	1 cut(s)	43
SetI	ASST	2 cut(s)	338, 613
SinI	GGWCC	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	586
SmlI	CTYRAG	2 cut(s)	36, 92
SmoI	CTYRAG	2 cut(s)	36, 92
Sse9I	AATT	5 cut(s)	87, 285, 348, 443, 546
SsiI	CCGC	3 cut(s)	296, 412, 599
SspI	AATATT	1 cut(s)	114
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	3 cut(s)	63, 517, 518
TaqI	TCGA	1 cut(s)	550
TasI	AATT	5 cut(s)	87, 285, 348, 443, 546
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TseFI	GTSAC	2 cut(s)	21, 373
TseI	GCWGC	1 cut(s)	534
Tsp45I	GTSAC	2 cut(s)	21, 373
TspDTI	ATGAA	3 cut(s)	374, 467, 473
TspMI	CCCGGG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	2 cut(s)	348, 443
XceI	RCATGY	2 cut(s)	534, 591
XmaI	CCCGGG	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	458
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.