Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Reverse (-)

25207120 .. 25209091

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G271200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGATGGTGAAGAATGAAGAGAAAACTAGGAGGCTCCGCTTGAGCACAGTGGATCGTGAGGCTCAGGAATCACGGTGTGTCAAGAGAAGGAGAAGAGACCCGGCTGCAGTTGCGGCTAGTTGTGACAACAGCCAGAGTGAGCAGCATTTGCCACAAAAACCAGCTGATCAAACTTCTGCTACCACAATGAAGAGAAGTTCAAGATTTCGCGGTGTCAGCAGGCATCGATGGACTGGTCGATTTGAAGCCCACTTGTGGGATAAGCTCTCTTGGAATGCAACGCAGAAGAAGAAAGGGAAACAAGGAGCTTATGATGAAGAAGAATCTGCTGCAAGGGCATATGATTTAGCTGCACTTAAGTATTGGGGAACGTCAACTTTCACAAACTTCGCGATATCAGACTATGAGGAAGAAATTGAGATAATGCAGACTGTAACAAAAGAAGAGTTTTTGGCCTCGTTACGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTATCTAAGTACAGAGGAGTAGCAAGGCACCATCATAATGGTAGATGGGAAGCAAGAATAGGAAGAGTTTTTGGAAACAAGTACCTCTACCTTGGCACTTACAGCACCCAAGAGGAAGCTGCTCGTGCCTATGACATTGCAGCAATTGAGTACAGAGGGATCAATGCTGTGACAAACTTCGACTTGAGTTCTTACATAAGATGGTTAAAGCCAAGAGCTGACGATCCGATAGCCACTCAAGAACCAGAGACAGTTGCAGAGCCTCAGAATATACCAGCATTCATGGCCAACAGCTACATCCCAACAGAGGAGCCCTCATTCTCACACACAAACCCTTTTGCCTCTGGTTACTTGAGCTCTCCTCAAAAGCAAAAAGTCACCAGAAGTAGCGTCCCACTTAACACTGGTAGCAAGTCATCTTCTCCCACCGCACTTGGCCTCCTCCTTCAGTCTTCAATCTTCAGAGAACTGGTTCAGAAGAATGCAAACTTCTCGGAGGATGAAAGTACTGACGGTGAAGAAAAGAAGAACCAGACACAGGTTGGTAGTGATGATGAGTTCAGTGGAATTTTCTATGATGGAATCCGAGACAACCCTTTTGTTTGCTCGTCCAACTCTGATGGAGACAACTCATGGAGCAGCATTGCAAGCACCATTTTGCTCAATCAGCCATCAAAAGCAAATGCCTCCTCGGACTCTCTATTTTTCTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

403

Amino Acids

45.27

Weight (kDa)

8.55

Isoelectric Point (pI)

60.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	519
AccII	CGCG	2 cut(s)	210, 392
AciI	CCGC	4 cut(s)	37, 113, 210, 921
AclWI	GGATC	3 cut(s)	60, 659, 710
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	1 cut(s)	1059
AcuI	CTGAAG	2 cut(s)	923, 937
AdeI	CACNNNGTG	1 cut(s)	77
AfaI	GTAC	4 cut(s)	503, 575, 644, 1000
AfiI	CCNNNNNNNGG	4 cut(s)	255, 256, 799, 1030
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	4 cut(s)	201, 245, 486, 948
AluBI	AGCT	8 cut(s)	164, 265, 308, 350, 611, 710, 786, 849
AluI	AGCT	8 cut(s)	164, 265, 308, 350, 611, 710, 786, 849
Alw21I	GWGCWC	2 cut(s)	47, 851
Alw26I	GTCTC	4 cut(s)	90, 734, 1074, 1110
AlwI	GGATC	3 cut(s)	60, 659, 710
AoxI	GGCC	3 cut(s)	453, 777, 928
ApeKI	GCWGC	7 cut(s)	104, 142, 329, 350, 611, 632, 1131
ApoI	RAATTY	1 cut(s)	1059
ArsI	GACNNNNNNTTYG	2 cut(s)	1073, 1105
Asp700I	GAANNNNTTC	1 cut(s)	963
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	19, 862, 1019
BalI	TGGCCA	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	519
BanII	GRGCYC	2 cut(s)	807, 851
BauI	CACGAG	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	936
Bbv12I	GWGCWC	2 cut(s)	47, 851
BbvI	GCAGC	7 cut(s)	91, 154, 316, 337, 598, 644, 1143
BccI	CCATC	7 cut(s)	222, 531, 531, 687, 1064, 1106, 1171
BcgI	CGANNNNNNTGC	2 cut(s)	966, 1000
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	4 cut(s)	90, 734, 1074, 1110
BfaI	CTAG	2 cut(s)	27, 117
BfmI	CTRYAG	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	356
BisI	GCNGC	8 cut(s)	105, 114, 143, 330, 351, 612, 633, 1132
BlsI	GCNGC	8 cut(s)	106, 115, 144, 331, 352, 613, 634, 1133
BmcAI	AGTACT	1 cut(s)	1000
Bme1390I	CCNGG	1 cut(s)	101
BmiI	GGNNCC	3 cut(s)	35, 521, 804
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	936
BplI	GAGNNNNNCTC	4 cut(s)	791, 823, 838, 870
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	4 cut(s)	61, 697, 714, 865
BpuMI	CCSGG	1 cut(s)	101
Bsa29I	ATCGAT	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	583, 1182
BsaXI	ACNNNNNCTCC	2 cut(s)	915, 945
Bsc4I	CCNNNNNNNGG	4 cut(s)	255, 256, 799, 1030
Bse1I	ACTGG	3 cut(s)	238, 901, 966
Bse3DI	GCAATG	2 cut(s)	627, 1134
BseCI	ATCGAT	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	583, 1182
BseGI	GGATG	2 cut(s)	789, 997
BseLI	CCNNNNNNNGG	4 cut(s)	255, 256, 799, 1030
BseMI	GCAATG	2 cut(s)	627, 1134
BseMII	CTCAG	2 cut(s)	77, 770
BseNI	ACTGG	3 cut(s)	238, 901, 966
BseRI	GAGGAG	5 cut(s)	522, 815, 843, 923, 1171
BseXI	GCAGC	7 cut(s)	91, 154, 316, 337, 598, 644, 1143
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	2 cut(s)	210, 392
BshFI	GGCC	3 cut(s)	455, 779, 930
BshNI	GGYRCC	1 cut(s)	519
BshVI	ATCGAT	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	47, 851
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	869
BslI	CCNNNNNNNGG	4 cut(s)	255, 256, 799, 1030
BsmAI	GTCTC	4 cut(s)	90, 734, 1074, 1110
BsmFI	GGGAC	1 cut(s)	869
BsmI	GAATGC	3 cut(s)	280, 770, 979
BsnI	GGCC	3 cut(s)	455, 779, 930
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	3 cut(s)	47, 807, 851
Bsp143I	GATC	4 cut(s)	52, 166, 651, 715
Bsp68I	TCGCGA	1 cut(s)	392
BspACI	CCGC	4 cut(s)	37, 113, 210, 921
BspANI	GGCC	3 cut(s)	455, 779, 930
BspCNI	CTCAG	2 cut(s)	76, 769
BspDI	ATCGAT	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	210, 392
BspLI	GGNNCC	3 cut(s)	35, 521, 804
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	3 cut(s)	60, 659, 710
BspT107I	GGYRCC	1 cut(s)	519
BspTI	CTTAAG	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	2 cut(s)	627, 1134
BsrI	ACTGG	3 cut(s)	238, 901, 966
BssECI	CCNNGG	2 cut(s)	583, 1182
BssMI	GATC	4 cut(s)	52, 166, 651, 715
BssSI	CACGAG	1 cut(s)	615
BssT1I	CCWWGG	1 cut(s)	583
Bst2BI	CACGAG	1 cut(s)	615
Bst4CI	ACNGT	5 cut(s)	49, 75, 433, 745, 1007
Bst6I	CTCTTC	5 cut(s)	12, 88, 185, 438, 550
BstAFI	CTTAAG	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	2 cut(s)	221, 1141
BstDEI	CTNAG	4 cut(s)	63, 498, 756, 1206
BstF5I	GGATG	2 cut(s)	789, 997
BstFNI	CGCG	2 cut(s)	210, 392
BstKTI	GATC	4 cut(s)	55, 169, 654, 718
BstMAI	GTCTC	4 cut(s)	90, 734, 1074, 1110
BstMBI	GATC	4 cut(s)	52, 166, 651, 715
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	105
BstUI	CGCG	2 cut(s)	210, 392
BstV1I	GCAGC	7 cut(s)	91, 154, 316, 337, 598, 644, 1143
BstV2I	GAAGAC	1 cut(s)	936
BstXI	CCANNNNNNTGG	1 cut(s)	530
Bsu15I	ATCGAT	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	455, 779, 930
BsuTUI	ATCGAT	1 cut(s)	226
BtsCI	GGATG	2 cut(s)	789, 997
BtsI	GCAGTG	1 cut(s)	481
BtsIMutI	CAGTG	4 cut(s)	54, 481, 894, 1060
BtuMI	TCGCGA	1 cut(s)	392
Cac8I	GCNNGC	2 cut(s)	221, 1141
ClaI	ATCGAT	1 cut(s)	226
CseI	GACGC	1 cut(s)	871
Csp6I	GTAC	4 cut(s)	502, 574, 643, 999
CspCI	CAANNNNNGTGG	2 cut(s)	907, 942
CviAII	CATG	2 cut(s)	775, 1125
CviQI	GTAC	4 cut(s)	502, 574, 643, 999
DdeI	CTNAG	4 cut(s)	63, 498, 756, 1206
DpnI	GATC	4 cut(s)	54, 168, 653, 717
DpnII	GATC	4 cut(s)	52, 166, 651, 715
DraIII	CACNNNGTG	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	5 cut(s)	12, 88, 185, 438, 550
EarI	CTCTTC	5 cut(s)	12, 88, 185, 438, 550
Ecl136II	GAGCTC	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	583
Eco24I	GRGCYC	2 cut(s)	807, 851
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	396
Eco53kI	GAGCTC	1 cut(s)	849
Eco57I	CTGAAG	2 cut(s)	923, 937
EcoICRI	GAGCTC	1 cut(s)	849
EcoRV	GATATC	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	583
EcoT38I	GRGCYC	2 cut(s)	807, 851
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	2 cut(s)	778, 1128
FaqI	GGGAC	1 cut(s)	869
FatI	CATG	2 cut(s)	774, 1124
FauNDI	CATATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	8 cut(s)	105, 114, 143, 330, 351, 612, 633, 1132
FokI	GGATG	2 cut(s)	776, 1004
FriOI	GRGCYC	2 cut(s)	807, 851
Fsp4HI	GCNGC	8 cut(s)	105, 114, 143, 330, 351, 612, 633, 1132
FspBI	CTAG	2 cut(s)	27, 117
GluI	GCNGC	8 cut(s)	105, 114, 143, 330, 351, 612, 633, 1132
HaeIII	GGCC	3 cut(s)	455, 779, 930
HapII	CCGG	1 cut(s)	101
HgaI	GACGC	1 cut(s)	871
Hin1II	CATG	2 cut(s)	778, 1128
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	4 cut(s)	68, 323, 1074, 1187
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	3 cut(s)	19, 862, 1019
Hpy166II	GTNNAC	1 cut(s)	375
Hpy188I	TCNGA	9 cut(s)	400, 720, 759, 956, 969, 988, 1079, 1111, 1186
Hpy188III	TCNNGA	7 cut(s)	56, 65, 82, 201, 391, 486, 731
Hpy8I	GTNNAC	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	81, 947
HpyCH4III	ACNGT	5 cut(s)	49, 75, 433, 745, 1007
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	9 cut(s)	107, 278, 332, 353, 427, 632, 749, 977, 1139
HpyF3I	CTNAG	4 cut(s)	63, 498, 756, 1206
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	2 cut(s)	778, 1128
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	52, 166, 651, 715
LmnI	GCTCC	4 cut(s)	39, 305, 802, 1128
Lsp1109I	GCAGC	7 cut(s)	91, 154, 316, 337, 598, 644, 1143
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	27, 117
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	6 cut(s)	122, 433, 459, 661, 839, 868
MalI	GATC	4 cut(s)	54, 168, 653, 717
MboI	GATC	4 cut(s)	52, 166, 651, 715
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	3 cut(s)	47, 807, 851
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	3 cut(s)	414, 636, 1059
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	1 cut(s)	1181
MmeI	TCCRAC	1 cut(s)	1128
Mox20I	TGGCCA	1 cut(s)	779
MroXI	GAANNNNTTC	1 cut(s)	963
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	3 cut(s)	357, 698, 891
MslI	CAYNNNNRTG	1 cut(s)	528
Msp20I	TGGCCA	1 cut(s)	779
MspA1I	CMGCKG	1 cut(s)	164
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	101
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	3 cut(s)	280, 770, 979
MvnI	CGCG	2 cut(s)	210, 392
NciI	CCSGG	1 cut(s)	101
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	4 cut(s)	52, 166, 651, 715
NlaIII	CATG	2 cut(s)	778, 1128
NlaIV	GGNNCC	3 cut(s)	35, 521, 804
NmuCI	GTSAC	3 cut(s)	122, 661, 868
NruI	TCGCGA	1 cut(s)	392
PctI	GAATGC	3 cut(s)	280, 770, 979
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	3 cut(s)	68, 323, 1074
PkrI	GCNGC	8 cut(s)	106, 115, 144, 331, 352, 613, 634, 1133
PleI	GAGTC	1 cut(s)	1181
PpsI	GAGTC	1 cut(s)	1181
Psp124BI	GAGCTC	1 cut(s)	851
PspN4I	GGNNCC	3 cut(s)	35, 521, 804
PstI	CTGCAG	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	164
RruI	TCGCGA	1 cut(s)	392
RsaI	GTAC	4 cut(s)	503, 575, 644, 1000
RsaNI	GTAC	4 cut(s)	502, 574, 643, 999
RseI	CAYNNNNRTG	1 cut(s)	528
SacI	GAGCTC	1 cut(s)	851
SaqAI	TTAA	3 cut(s)	357, 698, 891
SatI	GCNGC	8 cut(s)	105, 114, 143, 330, 351, 612, 633, 1132
Sau3AI	GATC	4 cut(s)	52, 166, 651, 715
ScaI	AGTACT	1 cut(s)	1000
SchI	GAGTC	1 cut(s)	1181
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	3 cut(s)	47, 807, 851
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	5 cut(s)	40, 356, 676, 729, 844
SmoI	CTYRAG	5 cut(s)	40, 356, 676, 729, 844
Sse9I	AATT	3 cut(s)	414, 636, 1059
SsiI	CCGC	4 cut(s)	37, 113, 210, 921
SspMI	CTAG	2 cut(s)	27, 117
SstI	GAGCTC	1 cut(s)	851
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	5 cut(s)	49, 75, 433, 745, 1007
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	3 cut(s)	226, 238, 672
TasI	AATT	3 cut(s)	414, 636, 1059
TatI	WGTACW	3 cut(s)	501, 642, 998
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	3 cut(s)	68, 323, 1074
Tru1I	TTAA	3 cut(s)	357, 698, 891
Tru9I	TTAA	3 cut(s)	357, 698, 891
TscAI	CASTG	4 cut(s)	54, 481, 901, 1060
TseFI	GTSAC	3 cut(s)	122, 661, 868
TseI	GCWGC	7 cut(s)	104, 142, 329, 350, 611, 632, 1131
Tsp45I	GTSAC	3 cut(s)	122, 661, 868
TspDTI	ATGAA	5 cut(s)	30, 203, 330, 763, 1008
TspRI	CASTG	4 cut(s)	54, 481, 901, 1060
Vha464I	CTTAAG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	1059
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1031
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	2 cut(s)	27, 117
ZrmI	AGTACT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.