Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Reverse (-)

61385520 .. 61387281

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGATCAGCTGGCTAGTAGTGTGAAATCGGAACTTGTGACGAGCCCTAGTAAGCGTCCAATTTGCATGATCGAAGTCGATGCTTTGGCTAACAAGTGTGTCAAGAGAAGGAGGAGGGATTCATCCACGGCTGTTTCACCAACAGGTCATAATGCTGATCAACAACAGCAGACACAGCCTAACCATCCATCGAGTACTACCACTACCACCACTACTACTACTACTGTCAAAAGAAGTTCCAGATTTCGCGGAGTCAGCAGGCATAGATGGACAGGGAGATATGAAGCTCATTTATGGGACAAGGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGTTTATCTGGGGGCTTATGATGAAGAAGAATCCGCAGCAAGAGCATATGATTTGGCAGCACTCAAGTACTGGGGAACATCAACTTTTACAAATTTTCCAGTGTCTGATTATGAGAATGAAATTGATCTAATGAACACCCTAACAAAAGAAGAATACTTGGCCTCTCTAAGAAGGTACCCAAGAAGAGGCAGCTCACGCCTATATGATATTGCAGCGATAGAATACAGAGGCATAAACGCTGTGACCAACTTTGACTTGAGCACATACATAAGATGGCTCAGACCAGGACCCAGTTCACTTGTTGCTAATTCTCAAGAACAACCAAAACCAAATATTGCTGACTCCAACAGCAACAATCCAAGCAAGGAAGAGAGACCAATGTCAATCTTTAATCCGAATAACTCATTCGCAGTAGAGGACATAGACACCACAAGAACTAGGGACATTTTCCAAAGACAGAATACTATGCCCCTCATCAGTCCTACTTGCACCCCTAAGTCATCTAATTCCCCAACCGCACTCAGCCTCCTCCTCAAATCCTCCATATTCAAGGAGCTGGTGGAGAAGAATTTGAATGATGAAACCGAAAAAAGTGACGATGAGAAGAGTGACATAATAAAGAACTTGCTCCCGCAGACAAACGGGACTGAAAATCTGAAGAGAGTTTTGTATGAAGGGATTCACAACATCCCTTTTTCGTGTTCATCCAGCAGGGATATGTTGCCTGCTTTAGAGTCCCGGGAGAAGAACATGCTACCATTATGCAATTCGAGGGGGCAATCCCTTTGGAATAATGGTGCCATCAACATGTTCTCATCCGCTGATTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

391

Amino Acids

44.19

Weight (kDa)

8.93

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	80 - 139	1.5e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	516
AccB1I	GGYRCC	2 cut(s)	516, 1139
AccII	CGCG	1 cut(s)	249
AciI	CCGC	5 cut(s)	249, 375, 858, 974, 1161
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	2 cut(s)	433, 910
AcuI	CTGAAG	1 cut(s)	1019
AfaI	GTAC	3 cut(s)	196, 410, 518
AfiI	CCNNNNNNNGG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	1149
AgsI	TTSAA	3 cut(s)	892, 916, 1171
AhdI	GACNNNNNGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	4 cut(s)	10, 287, 534, 898
AluI	AGCT	4 cut(s)	10, 287, 534, 898
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	1 cut(s)	709
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	446
Ama87I	CYCGRG	1 cut(s)	1080
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	4 cut(s)	377, 398, 531, 554
ApoI	RAATTY	2 cut(s)	433, 910
Asp700I	GAANNNNTTC	1 cut(s)	1020
Asp718I	GGTACC	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	629
AsuC2I	CCSGG	2 cut(s)	1081, 1082
AsuHPI	GGTGA	1 cut(s)	129
AvaI	CYCGRG	1 cut(s)	1080
AvaII	GGWCC	1 cut(s)	629
BanI	GGYRCC	2 cut(s)	516, 1139
BanII	GRGCYC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	605
BbvI	GCAGC	4 cut(s)	389, 410, 543, 566
BccI	CCATC	5 cut(s)	192, 196, 261, 609, 1151
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	627
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	1081, 1082
BcoDI	GTCTC	1 cut(s)	709
BfaI	CTAG	3 cut(s)	15, 48, 780
BisI	GCNGC	4 cut(s)	378, 399, 532, 555
BlsI	GCNGC	4 cut(s)	379, 400, 533, 556
BmcAI	AGTACT	2 cut(s)	196, 410
Bme1390I	CCNGG	3 cut(s)	627, 1081, 1082
Bme18I	GGWCC	1 cut(s)	629
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	1080
BmgT120I	GGNCC	1 cut(s)	629
BmiI	GGNNCC	3 cut(s)	518, 631, 1141
BmrFI	CCNGG	3 cut(s)	627, 1081, 1082
BmrI	ACTGGG	2 cut(s)	421, 627
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	2 cut(s)	421, 627
BoxI	GACNNNNGTC	1 cut(s)	721
BpuEI	CTTGAG	3 cut(s)	389, 619, 639
BpuMI	CCSGG	2 cut(s)	1081, 1082
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	2 cut(s)	126, 1080
BsaXI	ACNNNNNCTCC	2 cut(s)	852, 882
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse1I	ACTGG	3 cut(s)	416, 440, 633
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	2 cut(s)	126, 1080
BseGI	GGATG	5 cut(s)	122, 184, 1029, 1046, 1157
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMII	CTCAG	2 cut(s)	634, 877
BseNI	ACTGG	3 cut(s)	416, 440, 633
BseRI	GAGGAG	3 cut(s)	127, 860, 863
BseXI	GCAGC	4 cut(s)	389, 410, 543, 566
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	2 cut(s)	516, 1139
BsiHKAI	GWGCWC	1 cut(s)	605
BsiHKCI	CYCGRG	1 cut(s)	1080
BsiSI	CCGG	1 cut(s)	1081
BslFI	GGGAC	4 cut(s)	311, 797, 1000, 1063
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	1 cut(s)	709
BsmFI	GGGAC	4 cut(s)	311, 797, 1000, 1063
BsnI	GGCC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	709
BsoBI	CYCGRG	1 cut(s)	1080
Bsp1286I	GDGCHC	2 cut(s)	47, 605
Bsp143I	GATC	4 cut(s)	4, 69, 157, 466
BspACI	CCGC	5 cut(s)	249, 375, 858, 974, 1161
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	2 cut(s)	633, 876
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	518, 631, 1141
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	516, 1139
BspTNI	GGTCTC	1 cut(s)	709
BsrI	ACTGG	3 cut(s)	416, 440, 633
BssECI	CCNNGG	2 cut(s)	126, 1080
BssMI	GATC	4 cut(s)	4, 69, 157, 466
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	4 cut(s)	520, 705, 941, 995
BstC8I	GCNNGC	3 cut(s)	12, 260, 1068
BstDEI	CTNAG	4 cut(s)	509, 620, 837, 863
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	5 cut(s)	122, 184, 1029, 1046, 1157
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	4 cut(s)	7, 72, 160, 469
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	4 cut(s)	4, 69, 157, 466
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 255, 383, 537
BstNI	CCWGG	1 cut(s)	627
BstNSI	RCATGY	2 cut(s)	1096, 1153
BstPAI	GACNNNNGTC	1 cut(s)	721
BstSCI	CCNGG	3 cut(s)	625, 1079, 1080
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	389, 410, 543, 566
BsuRI	GGCC	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	5 cut(s)	122, 184, 1029, 1046, 1157
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	12, 260, 1068
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	629
Cfr9I	CCCGGG	1 cut(s)	1080
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	195, 409, 517
CviAII	CATG	3 cut(s)	67, 1093, 1150
CviQI	GTAC	3 cut(s)	195, 409, 517
DdeI	CTNAG	4 cut(s)	509, 620, 837, 863
DpnI	GATC	4 cut(s)	6, 71, 159, 468
DpnII	GATC	4 cut(s)	4, 69, 157, 466
DriI	GACNNNNNGTC	1 cut(s)	304
Eam1104I	CTCTTC	4 cut(s)	520, 705, 941, 995
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	4 cut(s)	520, 705, 941, 995
Eco24I	GRGCYC	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	709
Eco47I	GGWCC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	1019
Eco88I	CYCGRG	1 cut(s)	1080
EcoO109I	RGGNCCY	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	3 cut(s)	70, 1096, 1153
FaqI	GGGAC	4 cut(s)	311, 797, 1000, 1063
FatI	CATG	3 cut(s)	66, 1092, 1149
FauI	CCCGC	1 cut(s)	981
FauNDI	CATATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	378, 399, 532, 555
FokI	GGATG	5 cut(s)	109, 171, 1016, 1033, 1144
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	378, 399, 532, 555
FspBI	CTAG	3 cut(s)	15, 48, 780
GluI	GCNGC	4 cut(s)	378, 399, 532, 555
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	1 cut(s)	1081
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	70, 1096, 1153
HinfI	GANTC	7 cut(s)	119, 252, 313, 371, 683, 1021, 1076
HpaII	CCGG	1 cut(s)	1081
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	5 cut(s)	31, 448, 623, 738, 999
Hpy188III	TCNNGA	3 cut(s)	103, 240, 656
Hpy8I	GTNNAC	1 cut(s)	638
HpyAV	CCTTC	4 cut(s)	102, 325, 507, 1010
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	4 cut(s)	66, 554, 831, 1107
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 255, 383, 537
HpyF3I	CTNAG	4 cut(s)	509, 620, 837, 863
Hsp92II	CATG	3 cut(s)	70, 1096, 1153
KpnI	GGTACC	1 cut(s)	520
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	4, 69, 157, 466
LmnI	GCTCC	2 cut(s)	895, 975
Lsp1109I	GCAGC	4 cut(s)	389, 410, 543, 566
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	3 cut(s)	15, 48, 780
MaeIII	GTNAC	4 cut(s)	37, 583, 935, 950
MalI	GATC	4 cut(s)	6, 71, 159, 468
MboI	GATC	4 cut(s)	4, 69, 157, 466
MhlI	GDGCHC	2 cut(s)	47, 605
MluCI	AATT	7 cut(s)	60, 433, 462, 649, 847, 910, 1108
MlyI	GAGTC	3 cut(s)	261, 677, 1085
MmeI	TCCRAC	2 cut(s)	341, 711
MroXI	GAANNNNTTC	1 cut(s)	1020
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	1 cut(s)	1148
MspA1I	CMGCKG	2 cut(s)	10, 1163
MspI	CCGG	1 cut(s)	1081
MspR9I	CCNGG	3 cut(s)	627, 1081, 1082
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	175, 255, 383, 537
NciI	CCSGG	2 cut(s)	1081, 1082
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	4 cut(s)	4, 69, 157, 466
NlaIII	CATG	3 cut(s)	70, 1096, 1153
NlaIV	GGNNCC	3 cut(s)	518, 631, 1141
NmuCI	GTSAC	4 cut(s)	37, 583, 935, 950
NspI	RCATGY	2 cut(s)	1096, 1153
PciI	ACATGT	1 cut(s)	1149
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	4 cut(s)	119, 313, 371, 1021
PkrI	GCNGC	4 cut(s)	379, 400, 533, 556
PleI	GAGTC	3 cut(s)	260, 677, 1084
PpsI	GAGTC	3 cut(s)	260, 677, 1084
PpuMI	RGGWCCY	1 cut(s)	629
PscI	ACATGT	1 cut(s)	1149
PshAI	GACNNNNGTC	1 cut(s)	721
Psp5II	RGGWCCY	1 cut(s)	629
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	3 cut(s)	518, 631, 1141
PspPI	GGNCC	1 cut(s)	629
PspPPI	RGGWCCY	1 cut(s)	629
PstNI	CAGNNNCTG	1 cut(s)	446
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	3 cut(s)	196, 410, 518
RsaNI	GTAC	3 cut(s)	195, 409, 517
RseI	CAYNNNNRTG	1 cut(s)	1148
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	4 cut(s)	378, 399, 532, 555
Sau3AI	GATC	4 cut(s)	4, 69, 157, 466
Sau96I	GGNCC	1 cut(s)	629
ScaI	AGTACT	2 cut(s)	196, 410
SchI	GAGTC	3 cut(s)	261, 677, 1085
ScrFI	CCNGG	3 cut(s)	627, 1081, 1082
SduI	GDGCHC	2 cut(s)	47, 605
SetI	ASST	6 cut(s)	12, 148, 289, 518, 536, 900
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	1 cut(s)	629
SmaI	CCCGGG	1 cut(s)	1082
SmiMI	CAYNNNNRTG	1 cut(s)	1148
SmlI	CTYRAG	3 cut(s)	404, 598, 654
SmoI	CTYRAG	3 cut(s)	404, 598, 654
Sse9I	AATT	7 cut(s)	60, 433, 462, 649, 847, 910, 1108
SsiI	CCGC	5 cut(s)	249, 375, 858, 974, 1161
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	3 cut(s)	15, 48, 780
StyD4I	CCNGG	3 cut(s)	625, 1079, 1080
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	4 cut(s)	72, 78, 191, 1112
TasI	AATT	7 cut(s)	60, 433, 462, 649, 847, 910, 1108
TatI	WGTACW	2 cut(s)	194, 408
TfiI	GAWTC	4 cut(s)	119, 313, 371, 1021
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	4 cut(s)	37, 583, 935, 950
TseI	GCWGC	4 cut(s)	377, 398, 531, 554
Tsp45I	GTSAC	4 cut(s)	37, 583, 935, 950
TspDTI	ATGAA	8 cut(s)	111, 297, 378, 474, 488, 936, 1029, 1035
TspMI	CCCGGG	1 cut(s)	1080
TspRI	CASTG	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	2 cut(s)	433, 910
XceI	RCATGY	2 cut(s)	1096, 1153
XmaI	CCCGGG	1 cut(s)	1080
XmnI	GAANNNNTTC	1 cut(s)	1020
XspI	CTAG	3 cut(s)	15, 48, 780
ZrmI	AGTACT	2 cut(s)	196, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.