Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Forward (+)

3473473 .. 3474921

Gene Structure 1449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1047900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAATTCAACACAGAAGAAGAAAGGGAAACAAGAAAGAGCAGTGGATTTTCAAGAGGTGTATCAAAGTACCGAGGAGTAGCAAGGCACCATCACAACGGTAGATGGGAAGCGAGAATAGGACGAGTTTTCGGAAATAAGTACCTCTACCTTGGCACTTACGGTACGCAAGAGGAAGCTGCTCGCGCCTACGACATTGCAGCAATTGAGTACAGAGGGATCAATGCTGTGACCAACTTCGACTTGAGTTCTTACATAAGATGGTTGAAACCAAGAGCAGACGACATGATAGCTTCTCAACAAGTACCAGAGGCAGTCATAAAGCCAAAGAATACACCATTTGCGGCCAGCAGCTACATGACAACCGAGCAATCTCCCTTCTCACTCACAAATCCTTTTGCCTCTGATTACGTACACTCTCCTCGAAAGCAAGAAGTCATCCGCACCAGCAAATCATCTTCTCCCACCGCACTTGGCCTACTCCTCCAATCTTCAGTATTCCGAGATCTGGTCCAGAAGAACTCAAGTTTCTCAGATGATGACAGCATTGACGGCGAAGAACCAAGGAACCAACTGCAGGCTGGTAGAGATGATGAGTTCGGTGGAATAATCTATGACGGAGTTGGTGGCAGCCCTTTTGTTTGCTCTTCCAACACTGATGAAAACTTTACATGGAATAGCTTTACAAGCTTGATTTTCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

235

Amino Acids

26.23

Weight (kDa)

5.65

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	22 - 73	6.6e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	87
AccII	CGCG	1 cut(s)	186
AciI	CCGC	3 cut(s)	344, 442, 468
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	477
AfaI	GTAC	6 cut(s)	71, 143, 166, 212, 306, 414
AfiI	CCNNNNNNNGG	2 cut(s)	508, 577
AgsI	TTSAA	3 cut(s)	10, 54, 268
AluBI	AGCT	5 cut(s)	179, 293, 354, 681, 690
AluI	AGCT	5 cut(s)	179, 293, 354, 681, 690
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	345, 475
ApeKI	GCWGC	4 cut(s)	179, 200, 351, 630
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	166, 212, 363, 642
BccI	CCATC	3 cut(s)	99, 99, 255
BceAI	ACGGC	1 cut(s)	568
BfmI	CTRYAG	1 cut(s)	575
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	5 cut(s)	180, 201, 345, 352, 631
BlsI	GCNGC	5 cut(s)	181, 202, 346, 353, 632
Bme18I	GGWCC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	2 cut(s)	89, 569
BpuEI	CTTGAG	2 cut(s)	265, 508
BsaAI	YACGTR	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	73, 151, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 577
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	3 cut(s)	73, 151, 563
BseGI	GGATG	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	508, 577
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	546
BseRI	GAGGAG	3 cut(s)	90, 411, 473
BseXI	GCAGC	4 cut(s)	166, 212, 363, 642
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	347, 477
BshNI	GGYRCC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	508, 577
BsnI	GGCC	2 cut(s)	347, 477
Bsp143I	GATC	2 cut(s)	219, 505
BspACI	CCGC	3 cut(s)	344, 442, 468
BspANI	GGCC	2 cut(s)	347, 477
BspCNI	CTCAG	1 cut(s)	545
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	89, 569
BspMAI	CTGCAG	1 cut(s)	579
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	1 cut(s)	652
BspT107I	GGYRCC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	3 cut(s)	73, 151, 563
BssMI	GATC	2 cut(s)	219, 505
BssT1I	CCWWGG	2 cut(s)	151, 563
Bst4CI	ACNGT	2 cut(s)	101, 164
Bst6I	CTCTTC	1 cut(s)	652
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	3 cut(s)	184, 349, 579
BstDEI	CTNAG	2 cut(s)	532, 702
BstF5I	GGATG	1 cut(s)	438
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	2 cut(s)	222, 508
BstMBI	GATC	2 cut(s)	219, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 552, 687
BstSFI	CTRYAG	1 cut(s)	575
BstSNI	TACGTA	1 cut(s)	412
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	4 cut(s)	166, 212, 363, 642
BstX2I	RGATCY	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	347, 477
BtsCI	GGATG	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 654
Cac8I	GCNNGC	3 cut(s)	184, 349, 579
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	511
Csp6I	GTAC	6 cut(s)	70, 142, 165, 211, 305, 413
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CviAII	CATG	3 cut(s)	286, 358, 672
CviQI	GTAC	6 cut(s)	70, 142, 165, 211, 305, 413
DdeI	CTNAG	2 cut(s)	532, 702
DpnI	GATC	2 cut(s)	221, 507
DpnII	GATC	2 cut(s)	219, 505
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	652
EarI	CTCTTC	1 cut(s)	652
Eco105I	TACGTA	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	151, 563
Eco47I	GGWCC	1 cut(s)	511
Eco57I	CTGAAG	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	151, 563
ErhI	CCWWGG	2 cut(s)	151, 563
FaeI	CATG	3 cut(s)	289, 361, 675
FaiI	YATR	6 cut(s)	257, 287, 320, 359, 615, 673
FatI	CATG	3 cut(s)	285, 357, 671
Fnu4HI	GCNGC	5 cut(s)	180, 201, 345, 352, 631
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	5 cut(s)	180, 201, 345, 352, 631
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	5 cut(s)	180, 201, 345, 352, 631
HaeIII	GGCC	2 cut(s)	347, 477
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	289, 361, 675
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	688
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	4 cut(s)	134, 406, 503, 535
Hpy188III	TCNNGA	2 cut(s)	54, 514
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	2 cut(s)	101, 164
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	2 cut(s)	200, 577
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 552, 687
HpyF3I	CTNAG	2 cut(s)	532, 702
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	289, 361, 675
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	2 cut(s)	219, 505
LguI	GCTCTTC	1 cut(s)	652
LpnPI	CCDG	7 cut(s)	321, 361, 460, 494, 527, 563, 567
Lsp1109I	GCAGC	4 cut(s)	166, 212, 363, 642
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	221, 507
MboI	GATC	2 cut(s)	219, 505
MboII	GAAGA	7 cut(s)	29, 32, 450, 483, 529, 569, 639
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	505
MluCI	AATT	2 cut(s)	5, 204
MmeI	TCCRAC	1 cut(s)	675
MnlI	CCTC	9 cut(s)	50, 68, 155, 166, 209, 304, 412, 432, 494
MunI	CAATTG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	185, 552, 687
NdeII	GATC	2 cut(s)	219, 505
NlaIII	CATG	3 cut(s)	289, 361, 675
NlaIV	GGNNCC	2 cut(s)	89, 569
NmuCI	GTSAC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	652
PkrI	GCNGC	5 cut(s)	181, 202, 346, 353, 632
Ppu21I	YACGTR	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	89, 569
PspPI	GGNCC	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	579
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	6 cut(s)	71, 143, 166, 212, 306, 414
RsaNI	GTAC	6 cut(s)	70, 142, 165, 211, 305, 413
SapI	GCTCTTC	1 cut(s)	652
SatI	GCNGC	5 cut(s)	180, 201, 345, 352, 631
Sau3AI	GATC	2 cut(s)	219, 505
Sau96I	GGNCC	1 cut(s)	511
SetI	ASST	9 cut(s)	61, 147, 153, 181, 295, 356, 414, 683, 692
SfcI	CTRYAG	1 cut(s)	575
SinI	GGWCC	1 cut(s)	511
SmlI	CTYRAG	2 cut(s)	244, 523
SmoI	CTYRAG	2 cut(s)	244, 523
SnaBI	TACGTA	1 cut(s)	412
Sse9I	AATT	2 cut(s)	5, 204
SsiI	CCGC	3 cut(s)	344, 442, 468
StyI	CCWWGG	2 cut(s)	151, 563
TaaI	ACNGT	2 cut(s)	101, 164
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	2 cut(s)	240, 424
TasI	AATT	2 cut(s)	5, 204
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	347
TscAI	CASTG	2 cut(s)	49, 661
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	4 cut(s)	179, 200, 351, 630
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	2 cut(s)	49, 661
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.