Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Forward (+)

2912144 .. 2913978

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04250.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAGTTGACGATGGTGAAGAATGAAGAGAACCCTGGGAGGCGCCACCTGTGTGCAGAAGACCCTGAGGCTCAGGCTGCCGGGTGTGTCAACAGAAGGAGAAGAGACCCGCCTCCAGTTGCGGTTAGTTGCGAAAACAGCCACACTGAGCAGAAGTTGCCGCAAAAGCTAGCCGAACAAACTCTTACTACCACCATGAAGAGAAGCTCGAGATTTCGTGGTGTCAGCAGGCACCGGTGGACTGGTCGATTCGAAGCTCACTTGTGGGATAAGCTCTCATGGAATGTAACACAGAAGAAAAAAGGGAAACAAGCTTATGACAAAGAAGAATCTGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTACTGGGGAGCATCGACTTTCACCAACTTCCCGATATCGGACTATGAGAAAGAAATCGAGATCATGCAATCTGTCACGAAAGAAGAGTTTTTGGCCTCGTTAAGAAGCGTATCTAAGTACAGAGGAGTAGCAAGGCACCATCATAACGGCAGATGGGAAGCAAGAATCGGAAGAGTTTTCGAAAACAAGTACCTCTACCTTGGCACTTACAGTACCCAAGAGGAAGCAGCTCGAGCCTACGACATTGCAGCGATTGAGCACAGAGGGATCAATGCCGTCACCAGTTTTGACCTGAGTTCTTACATAAGATGGTTGAAGCCAAAAGCTGGCGACACCGTAGCCACTCAAGAACCAGAATCAGTCATAGAGCCTCAGAACATGCCGTTCATGACCAGTGGCTACATCCCAGCAGACGAAACATCCTTCTCACACACCAACCCTATTGCCTCTGACTATCTGAACTCTCCACGAAAGCAAGAAGTCACCCGAAGCAGCACCAATCTTAACGCCAGCAGCAAGTCATCTTCTCCCACTGCACTTGGTCTCCTCCTTCAATCTTCAATATTCCGAGAGCTGGTTCAGAAGAACTCAAATTTCTCCGAGGATGACAGCACCGACGGCGAGGAACCAAAGAACCAACCCCAGGTGGGTAGCGATGATGAATACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

346

Amino Acids

39.08

Weight (kDa)

6.78

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	42, 231, 501
AccB7I	CCANNNNNTGG	1 cut(s)	692
AciI	CCGC	3 cut(s)	110, 122, 161
AclWI	GGATC	1 cut(s)	641
AcsI	RAATTY	1 cut(s)	958
AcyI	GRCGYC	1 cut(s)	43
AfaI	GTAC	4 cut(s)	368, 485, 557, 580
AfiI	CCNNNNNNNGG	5 cut(s)	403, 692, 940, 1009, 1013
AgeI	ACCGGT	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	682, 920, 927
AjnI	CCWGG	2 cut(s)	34, 1008
AleI	CACNNNNGTG	1 cut(s)	51
AluBI	AGCT	8 cut(s)	169, 207, 257, 274, 314, 596, 692, 940
AluI	AGCT	8 cut(s)	169, 207, 257, 274, 314, 596, 692, 940
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	2 cut(s)	99, 914
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	2 cut(s)	208, 597
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	7 cut(s)	77, 335, 356, 593, 614, 858, 879
ApoI	RAATTY	1 cut(s)	958
AsiGI	ACCGGT	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	45
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	4 cut(s)	28, 379, 637, 841
AsuII	TTCGAA	2 cut(s)	252, 546
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	2 cut(s)	208, 597
AxyI	CCTNAGG	1 cut(s)	66
BanI	GGYRCC	3 cut(s)	42, 231, 501
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	7 cut(s)	64, 322, 368, 605, 626, 870, 891
BccI	CCATC	4 cut(s)	7, 513, 513, 669
BceAI	ACGGC	4 cut(s)	529, 626, 733, 1000
BciT130I	CCWGG	2 cut(s)	36, 1010
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	99, 914
BfaI	CTAG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	46
BisI	GCNGC	8 cut(s)	78, 161, 336, 357, 594, 615, 859, 880
BlsI	GCNGC	8 cut(s)	79, 162, 337, 358, 595, 616, 860, 881
BmcAI	AGTACT	1 cut(s)	368
Bme1390I	CCNGG	3 cut(s)	36, 82, 1010
BmeT110I	CYCGRG	2 cut(s)	208, 597
BmiI	GGNNCC	4 cut(s)	44, 233, 503, 993
BmrFI	CCNGG	3 cut(s)	36, 82, 1010
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	386
BmtI	GCTAGC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu14I	TTCGAA	2 cut(s)	252, 546
BpuEI	CTTGAG	2 cut(s)	347, 696
BpuMI	CCSGG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	43
BsaI	GGTCTC	2 cut(s)	99, 914
BsaJI	CCNNGG	5 cut(s)	34, 35, 565, 966, 1008
BsaWI	WCCGGW	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	894, 924
Bsc4I	CCNNNNNNNGG	5 cut(s)	403, 692, 940, 1009, 1013
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	5 cut(s)	116, 247, 374, 648, 759
Bse21I	CCTNAGG	1 cut(s)	66
Bse3DI	GCAATG	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	36, 1010
BseDI	CCNNGG	5 cut(s)	34, 35, 565, 966, 1008
BseGI	GGATG	3 cut(s)	768, 785, 976
BseLI	CCNNNNNNNGG	5 cut(s)	403, 692, 940, 1009, 1013
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	5 cut(s)	57, 86, 138, 650, 752
BseNI	ACTGG	5 cut(s)	116, 247, 374, 648, 759
BseRI	GAGGAG	2 cut(s)	504, 902
BseXI	GCAGC	7 cut(s)	64, 322, 368, 605, 626, 870, 891
BseYI	CCCAGC	1 cut(s)	772
BsgI	GTGCAG	2 cut(s)	75, 885
BshFI	GGCC	1 cut(s)	461
BshNI	GGYRCC	3 cut(s)	42, 231, 501
BshTI	ACCGGT	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	627
BsiHKCI	CYCGRG	2 cut(s)	208, 597
BsiSI	CCGG	2 cut(s)	81, 235
BslI	CCNNNNNNNGG	5 cut(s)	403, 692, 940, 1009, 1013
BsmAI	GTCTC	2 cut(s)	99, 914
BsnI	GGCC	1 cut(s)	461
Bso31I	GGTCTC	2 cut(s)	99, 914
BsoBI	CYCGRG	2 cut(s)	208, 597
Bsp119I	TTCGAA	2 cut(s)	252, 546
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp143I	GATC	2 cut(s)	426, 633
BspACI	CCGC	3 cut(s)	110, 122, 161
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	5 cut(s)	58, 85, 139, 651, 751
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	4 cut(s)	44, 233, 503, 993
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	1 cut(s)	641
BspT104I	TTCGAA	2 cut(s)	252, 546
BspT107I	GGYRCC	3 cut(s)	42, 231, 501
BspTNI	GGTCTC	2 cut(s)	99, 914
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	5 cut(s)	116, 247, 374, 648, 759
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	5 cut(s)	34, 35, 565, 966, 1008
BssMI	GATC	2 cut(s)	426, 633
BssNI	GRCGYC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	36, 1010
Bst4CI	ACNGT	3 cut(s)	578, 703, 1034
Bst6I	CTCTTC	5 cut(s)	21, 97, 194, 444, 532
BstACI	GRCGYC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	157
BstBI	TTCGAA	2 cut(s)	252, 546
BstC8I	GCNNGC	4 cut(s)	171, 230, 694, 877
BstDEI	CTNAG	6 cut(s)	66, 72, 147, 480, 659, 738
BstF5I	GGATG	3 cut(s)	768, 785, 976
BstH2I	RGCGCY	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	2 cut(s)	429, 636
BstMAI	GTCTC	2 cut(s)	99, 914
BstMBI	GATC	2 cut(s)	426, 633
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 138, 157, 166, 341, 599, 984
BstNI	CCWGG	2 cut(s)	36, 1010
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	3 cut(s)	34, 80, 1008
BstV1I	GCAGC	7 cut(s)	64, 322, 368, 605, 626, 870, 891
BstV2I	GAAGAC	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	461
BtsCI	GGATG	3 cut(s)	768, 785, 976
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	3 cut(s)	144, 766, 897
Cac8I	GCNNGC	4 cut(s)	171, 230, 694, 877
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	1 cut(s)	45
Cfr10I	RCCGGY	1 cut(s)	234
Csp6I	GTAC	4 cut(s)	367, 484, 556, 579
CspAI	ACCGGT	1 cut(s)	234
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviAII	CATG	5 cut(s)	196, 279, 430, 745, 754
CviQI	GTAC	4 cut(s)	367, 484, 556, 579
DdeI	CTNAG	6 cut(s)	66, 72, 147, 480, 659, 738
DinI	GGCGCC	1 cut(s)	44
DpnI	GATC	2 cut(s)	428, 635
DpnII	GATC	2 cut(s)	426, 633
Eam1104I	CTCTTC	5 cut(s)	21, 97, 194, 444, 532
EarI	CTCTTC	5 cut(s)	21, 97, 194, 444, 532
Eco130I	CCWWGG	1 cut(s)	565
Eco31I	GGTCTC	2 cut(s)	99, 914
Eco32I	GATATC	1 cut(s)	402
Eco81I	CCTNAGG	1 cut(s)	66
Eco88I	CYCGRG	2 cut(s)	208, 597
EcoRII	CCWGG	2 cut(s)	34, 1008
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	565
EgeI	GGCGCC	1 cut(s)	44
EheI	GGCGCC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	5 cut(s)	199, 282, 433, 748, 757
FatI	CATG	5 cut(s)	195, 278, 429, 744, 753
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	8 cut(s)	78, 161, 336, 357, 594, 615, 859, 880
FokI	GGATG	3 cut(s)	755, 772, 983
Fsp4HI	GCNGC	8 cut(s)	78, 161, 336, 357, 594, 615, 859, 880
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	8 cut(s)	78, 161, 336, 357, 594, 615, 859, 880
GsaI	CCCAGC	1 cut(s)	776
GsuI	CTGGAG	1 cut(s)	99
HaeII	RGCGCY	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	2 cut(s)	81, 235
HhaI	GCGC	1 cut(s)	45
Hin1I	GRCGYC	1 cut(s)	43
Hin1II	CATG	5 cut(s)	199, 282, 433, 748, 757
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HincII	GTYRAC	2 cut(s)	9, 91
HindII	GTYRAC	2 cut(s)	9, 91
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	4 cut(s)	249, 329, 531, 722
HpaII	CCGG	2 cut(s)	81, 235
HphI	GGTGA	4 cut(s)	28, 379, 637, 841
Hpy166II	GTNNAC	3 cut(s)	9, 91, 240
Hpy188I	TCNGA	8 cut(s)	406, 536, 741, 817, 825, 935, 948, 967
Hpy188III	TCNNGA	6 cut(s)	210, 397, 424, 442, 713, 754
Hpy8I	GTNNAC	3 cut(s)	9, 91, 240
Hpy99I	CGWCG	1 cut(s)	986
HpyAV	CCTTC	3 cut(s)	90, 799, 926
HpyCH4III	ACNGT	3 cut(s)	578, 703, 1034
HpyCH4V	TGCA	5 cut(s)	56, 338, 433, 614, 902
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 138, 157, 166, 341, 599, 984
HpyF3I	CTNAG	6 cut(s)	66, 72, 147, 480, 659, 738
Hsp92I	GRCGYC	1 cut(s)	43
Hsp92II	CATG	5 cut(s)	199, 282, 433, 748, 757
HspAI	GCGC	1 cut(s)	43
KasI	GGCGCC	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	426, 633
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	7 cut(s)	64, 322, 368, 605, 626, 870, 891
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	4 cut(s)	286, 439, 643, 847
MalI	GATC	2 cut(s)	428, 635
MboI	GATC	2 cut(s)	426, 633
MhlI	GDGCHC	1 cut(s)	627
MluCI	AATT	1 cut(s)	958
Mly113I	GGCGCC	1 cut(s)	43
MseI	TTAA	2 cut(s)	467, 870
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	2 cut(s)	81, 235
MspR9I	CCNGG	3 cut(s)	36, 82, 1010
MvaI	CCWGG	2 cut(s)	36, 1010
MwoI	GCNNNNNNNGC	7 cut(s)	77, 138, 157, 166, 341, 599, 984
NarI	GGCGCC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	82
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	2 cut(s)	426, 633
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	5 cut(s)	199, 282, 433, 748, 757
NlaIV	GGNNCC	4 cut(s)	44, 233, 503, 993
NmuCI	GTSAC	3 cut(s)	439, 643, 847
NspI	RCATGY	1 cut(s)	748
NspV	TTCGAA	2 cut(s)	252, 546
OliI	CACNNNNGTG	1 cut(s)	51
PaeR7I	CTCGAG	2 cut(s)	208, 597
PagI	TCATGA	1 cut(s)	753
PasI	CCCWGGG	1 cut(s)	35
PfeI	GAWTC	4 cut(s)	249, 329, 531, 722
PflMI	CCANNNNNTGG	1 cut(s)	692
PinAI	ACCGGT	1 cut(s)	234
PkrI	GCNGC	8 cut(s)	79, 162, 337, 358, 595, 616, 860, 881
PluTI	GGCGCC	1 cut(s)	46
Psp6I	CCWGG	2 cut(s)	34, 1008
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	2 cut(s)	34, 1008
PspN4I	GGNNCC	4 cut(s)	44, 233, 503, 993
PspXI	VCTCGAGB	1 cut(s)	597
RsaI	GTAC	4 cut(s)	368, 485, 557, 580
RsaNI	GTAC	4 cut(s)	367, 484, 556, 579
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	467, 870
SatI	GCNGC	8 cut(s)	78, 161, 336, 357, 594, 615, 859, 880
Sau3AI	GATC	2 cut(s)	426, 633
ScaI	AGTACT	1 cut(s)	368
ScrFI	CCNGG	3 cut(s)	36, 82, 1010
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	1 cut(s)	386
SfoI	GGCGCC	1 cut(s)	44
Sfr274I	CTCGAG	2 cut(s)	208, 597
SfuI	TTCGAA	2 cut(s)	252, 546
SgrAI	CRCCGGYG	1 cut(s)	234
SlaI	CTCGAG	2 cut(s)	208, 597
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	4 cut(s)	208, 362, 597, 711
SmoI	CTYRAG	4 cut(s)	208, 362, 597, 711
Sse9I	AATT	1 cut(s)	958
SsiI	CCGC	3 cut(s)	110, 122, 161
SspDI	GGCGCC	1 cut(s)	42
SspI	AATATT	1 cut(s)	930
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	3 cut(s)	34, 80, 1008
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	578, 703, 1034
TaqI	TCGA	7 cut(s)	209, 247, 252, 380, 423, 546, 598
TasI	AATT	1 cut(s)	958
TatI	WGTACW	2 cut(s)	366, 483
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	4 cut(s)	249, 329, 531, 722
Tru1I	TTAA	2 cut(s)	467, 870
Tru9I	TTAA	2 cut(s)	467, 870
TscAI	CASTG	3 cut(s)	151, 766, 904
TseFI	GTSAC	3 cut(s)	439, 643, 847
TseI	GCWGC	7 cut(s)	77, 335, 356, 593, 614, 858, 879
Tsp45I	GTSAC	3 cut(s)	439, 643, 847
TspDTI	ATGAA	3 cut(s)	39, 212, 742
TspRI	CASTG	3 cut(s)	151, 766, 904
Van91I	CCANNNNNTGG	1 cut(s)	692
XapI	RAATTY	1 cut(s)	958
XceI	RCATGY	1 cut(s)	748
XhoI	CTCGAG	2 cut(s)	208, 597
XspI	CTAG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.