Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8472159.1

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Reverse (-)

511 .. 1986

Gene Structure 1476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8472159.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atgaagagaagctcaaggtttcgcggcgtcagcagacataggtggactggccgatttgaagctcacttgtgggacaagctttcttggaatataacacagaagaagaaagggaaacaagtctaccttggggcatatgatgaagaagagtctgctgcaagagcctatgatttagctgcactcaagtactggggaacctcaactttcacaaacttcccgatatcagactatgagaacgaaattgagatcatgcaatctgtaacaaaagaagaatatctggcctctttaagaagaaagagcagtggcttttcaagaggtgtgtccaagtacagaggagtagcaaggcaccatcacaatggcagatgggaagcaagaatcggaagagttttcggaaacaagtacctctaccttggcacttacagcacccaagaggaagcagctcgcgcctatgacattgcggcaattgagtacagagggatcaatgctgtgaccaacttcgacttgagctcttacattagatggttaaagccaaaagtagacagcacaatagcagctcaagaattagagacagttgcagagcctgagaatatcccattcatggccagcaactacatcccaacagaggaatcccccttgtcacacacaaacccttttgcctctgactacttgacctcgccaaagcaagaagtgtccaggagcaacgtccctctcgactcaagcagcaagtcatcctctccaaccgcacttggcctcctccttcagtcttctatattcagagaactggttcagaagaactcgaattactcggaggatgaaagcaccgatggagaagaacaaaagaaccaagcacaaggtgggagtgacgacgagtatggtggacctttttcatatgaccgaattggggccaatagcccgtttgtttcctctaccaacagggaaagcatagaactgcaagaaagagagctccttcactccccatggaacagcttcgcaagcacgatgctgcttaatcaaacaacaaaagcagatgcctcagagtctctgttcttcttttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

351

Amino Acids

39.81

Weight (kDa)

5.9

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	342
AccI	GTMKAC	2 cut(s)	120, 534
AccII	CGCG	2 cut(s)	24, 441
AciI	CCGC	3 cut(s)	24, 455, 738
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	2 cut(s)	49, 597
AcuI	CTGAAG	1 cut(s)	740
AcyI	GRCGYC	1 cut(s)	27
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	4 cut(s)	185, 326, 398, 467
AfiI	CCNNNNNNNGG	3 cut(s)	595, 619, 898
AgsI	TTSAA	2 cut(s)	59, 309
AjnI	CCWGG	1 cut(s)	689
AluBI	AGCT	9 cut(s)	12, 62, 79, 173, 437, 504, 551, 961, 984
AluI	AGCT	9 cut(s)	12, 62, 79, 173, 437, 504, 551, 961, 984
Alw21I	GWGCWC	2 cut(s)	506, 963
Alw26I	GTCTC	2 cut(s)	557, 1041
AlwI	GGATC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	5 cut(s)	49, 276, 597, 745, 900
ApeKI	GCWGC	6 cut(s)	152, 173, 434, 548, 717, 1000
Asp700I	GAANNNNTTC	2 cut(s)	780, 983
AspLEI	GCGC	1 cut(s)	443
AspS9I	GGNCC	2 cut(s)	875, 900
AvaII	GGWCC	1 cut(s)	875
BalI	TGGCCA	1 cut(s)	599
BanI	GGYRCC	1 cut(s)	342
BanII	GRGCYC	2 cut(s)	506, 963
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	2 cut(s)	506, 963
BbvI	GCAGC	6 cut(s)	139, 160, 446, 560, 729, 987
BccI	CCATC	4 cut(s)	354, 354, 510, 815
BciT130I	CCWGG	1 cut(s)	691
BcoDI	GTCTC	2 cut(s)	557, 1041
BisI	GCNGC	8 cut(s)	25, 153, 174, 435, 456, 549, 718, 1001
BlsI	GCNGC	8 cut(s)	26, 154, 175, 436, 457, 550, 719, 1002
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	691
Bme18I	GGWCC	1 cut(s)	875
BmgT120I	GGNCC	2 cut(s)	875, 900
BmiI	GGNNCC	3 cut(s)	193, 344, 901
BmrFI	CCNGG	1 cut(s)	691
BmrI	ACTGGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	987, 1015
BmuI	ACTGGG	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	753
BpuEI	CTTGAG	4 cut(s)	164, 520, 537, 697
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	124, 406, 974
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	595, 619, 898
Bse1I	ACTGG	3 cut(s)	52, 191, 783
Bse3DI	GCAATG	1 cut(s)	450
BseBI	CCWGG	1 cut(s)	691
BseDI	CCNNGG	3 cut(s)	124, 406, 974
BseGI	GGATG	3 cut(s)	609, 725, 814
BseLI	CCNNNNNNNGG	3 cut(s)	595, 619, 898
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	570, 1044
BseNI	ACTGG	3 cut(s)	52, 191, 783
BseRI	GAGGAG	2 cut(s)	345, 740
BseXI	GCAGC	6 cut(s)	139, 160, 446, 560, 729, 987
BsgI	GTGCAG	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	24, 441
BshFI	GGCC	5 cut(s)	51, 278, 599, 747, 902
BshNI	GGYRCC	1 cut(s)	342
BsiHKAI	GWGCWC	2 cut(s)	506, 963
BslFI	GGGAC	2 cut(s)	86, 686
BslI	CCNNNNNNNGG	3 cut(s)	595, 619, 898
BsmAI	GTCTC	2 cut(s)	557, 1041
BsmFI	GGGAC	2 cut(s)	86, 686
BsnI	GGCC	5 cut(s)	51, 278, 599, 747, 902
Bsp1286I	GDGCHC	2 cut(s)	506, 963
Bsp143I	GATC	2 cut(s)	243, 474
Bsp19I	CCATGG	1 cut(s)	974
BspACI	CCGC	3 cut(s)	24, 455, 738
BspANI	GGCC	5 cut(s)	51, 278, 599, 747, 902
BspCNI	CTCAG	2 cut(s)	571, 1043
BspFNI	CGCG	2 cut(s)	24, 441
BspLI	GGNNCC	3 cut(s)	193, 344, 901
BspPI	GGATC	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	52, 191, 783
BssECI	CCNNGG	3 cut(s)	124, 406, 974
BssMI	GATC	2 cut(s)	243, 474
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	3 cut(s)	124, 406, 974
Bst2UI	CCWGG	1 cut(s)	691
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	2 cut(s)	138, 373
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	439, 601, 991
BstDEI	CTNAG	3 cut(s)	579, 1030, 1053
BstDSI	CCRYGG	1 cut(s)	974
BstF5I	GGATG	3 cut(s)	609, 725, 814
BstFNI	CGCG	2 cut(s)	24, 441
BstHHI	GCGC	1 cut(s)	443
BstKTI	GATC	2 cut(s)	246, 477
BstMAI	GTCTC	2 cut(s)	557, 1041
BstMBI	GATC	2 cut(s)	243, 474
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 158, 417, 440, 990
BstNI	CCWGG	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	689
BstUI	CGCG	2 cut(s)	24, 441
BstV1I	GCAGC	6 cut(s)	139, 160, 446, 560, 729, 987
BstV2I	GAAGAC	1 cut(s)	753
BstXI	CCANNNNNNTGG	1 cut(s)	353
BsuRI	GGCC	5 cut(s)	51, 278, 599, 747, 902
BtgI	CCRYGG	1 cut(s)	974
BtsCI	GGATG	3 cut(s)	609, 725, 814
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	439, 601, 991
CaiI	CAGNNNCTG	1 cut(s)	578
CfoI	GCGC	1 cut(s)	443
Cfr13I	GGNCC	2 cut(s)	875, 900
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	4 cut(s)	184, 325, 397, 466
CviAII	CATG	3 cut(s)	247, 595, 975
CviQI	GTAC	4 cut(s)	184, 325, 397, 466
DdeI	CTNAG	3 cut(s)	579, 1030, 1053
DpnI	GATC	2 cut(s)	245, 476
DpnII	GATC	2 cut(s)	243, 474
DraIII	CACNNNGTG	1 cut(s)	851
EaeI	YGGCCR	2 cut(s)	49, 597
Eam1104I	CTCTTC	2 cut(s)	138, 373
EarI	CTCTTC	2 cut(s)	138, 373
Ecl136II	GAGCTC	2 cut(s)	504, 961
Eco130I	CCWWGG	3 cut(s)	124, 406, 974
Eco24I	GRGCYC	2 cut(s)	506, 963
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	875
Eco53kI	GAGCTC	2 cut(s)	504, 961
Eco57I	CTGAAG	1 cut(s)	740
EcoICRI	GAGCTC	2 cut(s)	504, 961
EcoRII	CCWGG	1 cut(s)	689
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	3 cut(s)	124, 406, 974
EcoT38I	GRGCYC	2 cut(s)	506, 963
ErhI	CCWWGG	3 cut(s)	124, 406, 974
FaeI	CATG	3 cut(s)	250, 598, 978
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	2 cut(s)	86, 686
FatI	CATG	3 cut(s)	246, 594, 974
FauNDI	CATATG	2 cut(s)	133, 886
FblI	GTMKAC	2 cut(s)	120, 534
Fnu4HI	GCNGC	8 cut(s)	25, 153, 174, 435, 456, 549, 718, 1001
FokI	GGATG	3 cut(s)	596, 712, 821
FriOI	GRGCYC	2 cut(s)	506, 963
Fsp4HI	GCNGC	8 cut(s)	25, 153, 174, 435, 456, 549, 718, 1001
GlaI	GCGC	1 cut(s)	442
GluI	GCNGC	8 cut(s)	25, 153, 174, 435, 456, 549, 718, 1001
HaeIII	GGCC	5 cut(s)	51, 278, 599, 747, 902
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	1 cut(s)	443
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	250, 598, 978
Hin6I	GCGC	1 cut(s)	441
HinP1I	GCGC	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	5 cut(s)	146, 372, 623, 710, 1034
Hpy166II	GTNNAC	4 cut(s)	45, 121, 535, 875
Hpy188I	TCNGA	8 cut(s)	223, 377, 389, 658, 773, 786, 805, 1033
Hpy188III	TCNNGA	4 cut(s)	214, 309, 554, 707
Hpy8I	GTNNAC	4 cut(s)	45, 121, 535, 875
Hpy99I	CGWCG	1 cut(s)	866
HpyAV	CCTTC	2 cut(s)	764, 974
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	1 cut(s)	699
HpyCH4V	TGCA	5 cut(s)	155, 176, 250, 572, 949
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 158, 417, 440, 990
HpyF3I	CTNAG	3 cut(s)	579, 1030, 1053
HpySE526I	ACGT	1 cut(s)	699
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	250, 598, 978
HspAI	GCGC	1 cut(s)	441
Kzo9I	GATC	2 cut(s)	243, 474
LmnI	GCTCC	2 cut(s)	693, 966
LpnPI	CCDG	9 cut(s)	33, 172, 260, 591, 613, 676, 703, 764, 916
Lsp1109I	GCAGC	6 cut(s)	139, 160, 446, 560, 729, 987
LweI	GCATC	2 cut(s)	987, 1015
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	4 cut(s)	256, 484, 633, 857
MalI	GATC	2 cut(s)	245, 476
MboI	GATC	2 cut(s)	243, 474
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	2 cut(s)	506, 963
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	5 cut(s)	237, 459, 557, 796, 894
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	3 cut(s)	155, 704, 1043
MmeI	TCCRAC	1 cut(s)	758
Mox20I	TGGCCA	1 cut(s)	599
MroXI	GAANNNNTTC	2 cut(s)	780, 983
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	3 cut(s)	284, 521, 1005
MslI	CAYNNNNRTG	1 cut(s)	351
Msp20I	TGGCCA	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	691
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	691
MvnI	CGCG	2 cut(s)	24, 441
MwoI	GCNNNNNNNGC	5 cut(s)	30, 158, 417, 440, 990
NcoI	CCATGG	1 cut(s)	974
NdeI	CATATG	2 cut(s)	133, 886
NdeII	GATC	2 cut(s)	243, 474
NlaIII	CATG	3 cut(s)	250, 598, 978
NlaIV	GGNNCC	3 cut(s)	193, 344, 901
NmuCI	GTSAC	3 cut(s)	484, 633, 857
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PdmI	GAANNNNTTC	2 cut(s)	780, 983
PfeI	GAWTC	2 cut(s)	372, 623
PfoI	TCCNGGA	1 cut(s)	689
PkrI	GCNGC	8 cut(s)	26, 154, 175, 436, 457, 550, 719, 1002
PleI	GAGTC	3 cut(s)	154, 704, 1042
PpsI	GAGTC	3 cut(s)	154, 704, 1042
Psp124BI	GAGCTC	2 cut(s)	506, 963
Psp6I	CCWGG	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	689
PspN4I	GGNNCC	3 cut(s)	193, 344, 901
PspPI	GGNCC	2 cut(s)	875, 900
PsrI	GAACNNNNNNTAC	2 cut(s)	782, 814
PstNI	CAGNNNCTG	1 cut(s)	578
RsaI	GTAC	4 cut(s)	185, 326, 398, 467
RsaNI	GTAC	4 cut(s)	184, 325, 397, 466
RseI	CAYNNNNRTG	1 cut(s)	351
SacI	GAGCTC	2 cut(s)	506, 963
SaqAI	TTAA	3 cut(s)	284, 521, 1005
SatI	GCNGC	8 cut(s)	25, 153, 174, 435, 456, 549, 718, 1001
Sau3AI	GATC	2 cut(s)	243, 474
Sau96I	GGNCC	2 cut(s)	875, 900
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	3 cut(s)	155, 704, 1043
ScrFI	CCNGG	1 cut(s)	691
SduI	GDGCHC	2 cut(s)	506, 963
SfaNI	GCATC	2 cut(s)	987, 1015
SinI	GGWCC	1 cut(s)	875
SmiMI	CAYNNNNRTG	1 cut(s)	351
SmlI	CTYRAG	5 cut(s)	13, 179, 499, 552, 712
SmoI	CTYRAG	5 cut(s)	13, 179, 499, 552, 712
Sse9I	AATT	5 cut(s)	237, 459, 557, 796, 894
SsiI	CCGC	3 cut(s)	24, 455, 738
SstI	GAGCTC	2 cut(s)	506, 963
StyD4I	CCNGG	1 cut(s)	689
StyI	CCWWGG	3 cut(s)	124, 406, 974
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	3 cut(s)	495, 708, 794
TaqII	GACCGA	1 cut(s)	906
TasI	AATT	5 cut(s)	237, 459, 557, 796, 894
TatI	WGTACW	3 cut(s)	183, 324, 465
TauI	GCSGC	2 cut(s)	27, 458
TfiI	GAWTC	2 cut(s)	372, 623
Tru1I	TTAA	3 cut(s)	284, 521, 1005
Tru9I	TTAA	3 cut(s)	284, 521, 1005
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	3 cut(s)	484, 633, 857
TseI	GCWGC	6 cut(s)	152, 173, 434, 548, 717, 1000
Tsp45I	GTSAC	3 cut(s)	484, 633, 857
TspDTI	ATGAA	5 cut(s)	17, 153, 583, 825, 873
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	848
XmiI	GTMKAC	2 cut(s)	120, 534
XmnI	GAANNNNTTC	2 cut(s)	780, 983
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.