Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Forward (+)

4896672 .. 4898426

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATCAGCTGGCTAGTAGTGTGAAATCGGAACTCGTGACGAGCCCTAGTAAGCATCCAATTTGCATGATCGAAGTCGATGCTTTGGTTAACAAGTGTGTCAAGAGAAGGAGGAGGGATTCATCCACGGCTGTTTCACCAACAGGTCATAATGCTGATCAACAACAGCAGACACAGCCTAACCATCCATCGAGGGCTTATGATGAAGAAGAATCCGCAGCAAGAGCATATGATTTGGCAGCACTCAAGCATCATCACAATGGGAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGAAACAAGTATCTGTATCTTGGCACTTACGGTACCCAAGAAGAGGCAGCTCACGCCTATGATATTGCAGCGATAGAATACAGAGGCATAAACGCTGTGACCAACTTTGACTTGAGCACATACATAAGATGGCTCAGACCAGGACCCAGTTCACTTGTTGCTGATTCTCAAGAACAACCAAAACCAAATATTGCTGACTCCAACAGCAACAATCCAAGCAAGGAAGAGAGACCAATGTCAATCTTTAATCCGAATAACTCATTCGCAGTAGAGGACATAGACACCGCAAGAACTAGGGACATTTTCCAAAGACAGAATAATATGCCCCCCATCAGTCCTACTTGCACCCCTAAGTCATCTAATTCCCCAACTGCGCTCAGCCTCCTCCTCAAATCCTCCATATTCAAGGAGCTGGTGGAGAAGAATTTGAATGATGAAACCGAAGAAAGTGGCGATGAGAAGAGTGATATAATAAAGAACTTGCTCCCGCAGACAAACGGGACTGAAAATCTGAAGAGAATTTTGTATGAAGGGATTCACAACATCCCTTTTTCGTGTTCATCCAACAGGGATATGTTGCCTGCTTTAGAGTCCCAGGAGAAGAACATGCTACCATTATGCAATTTGAGGGGGCGATCCCTTTGGAATAATGGTGCCATCAACATGTTCTCATCCGCTGATTTCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

328

Amino Acids

36.61

Weight (kDa)

5.95

Isoelectric Point (pI)

66.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	87 - 127	5e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	326
AccB1I	GGYRCC	2 cut(s)	326, 947
AciI	CCGC	4 cut(s)	216, 579, 782, 969
AclWI	GGATC	2 cut(s)	12, 924
AcsI	RAATTY	2 cut(s)	718, 813
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflIII	ACRYGT	1 cut(s)	957
AgsI	TTSAA	3 cut(s)	700, 724, 979
AjnI	CCWGG	2 cut(s)	433, 888
AjuI	GAANNNNNNNTTGG	2 cut(s)	264, 296
AluBI	AGCT	3 cut(s)	10, 344, 706
AluI	AGCT	3 cut(s)	10, 344, 706
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	2 cut(s)	12, 924
ApeKI	GCWGC	4 cut(s)	218, 239, 341, 362
ApoI	RAATTY	2 cut(s)	718, 813
Asp700I	GAANNNNTTC	1 cut(s)	828
Asp718I	GGTACC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	437
BanI	GGYRCC	2 cut(s)	326, 947
BanII	GRGCYC	1 cut(s)	47
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	4 cut(s)	230, 251, 353, 374
BccI	CCATC	6 cut(s)	192, 196, 261, 417, 632, 959
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	2 cut(s)	435, 890
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	3 cut(s)	15, 48, 588
BisI	GCNGC	4 cut(s)	219, 240, 342, 363
BlpI	GCTNAGC	1 cut(s)	671
BlsI	GCNGC	4 cut(s)	220, 241, 343, 364
Bme1390I	CCNGG	2 cut(s)	435, 890
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	3 cut(s)	328, 439, 949
BmrFI	CCNGG	2 cut(s)	435, 890
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	3 cut(s)	64, 70, 259
BmuI	ACTGGG	1 cut(s)	435
BoxI	GACNNNNGTC	1 cut(s)	529
Bpu1102I	GCTNAGC	1 cut(s)	671
BpuEI	CTTGAG	3 cut(s)	230, 427, 447
BsaI	GGTCTC	1 cut(s)	517
BsaJI	CCNNGG	2 cut(s)	126, 888
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	435, 890
BseDI	CCNNGG	2 cut(s)	126, 888
BseGI	GGATG	6 cut(s)	55, 122, 184, 837, 854, 965
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	2 cut(s)	442, 685
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	3 cut(s)	127, 668, 671
BseXI	GCAGC	4 cut(s)	230, 251, 353, 374
BshNI	GGYRCC	2 cut(s)	326, 947
BsiHKAI	GWGCWC	1 cut(s)	413
BslFI	GGGAC	3 cut(s)	605, 808, 871
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	3 cut(s)	605, 808, 871
Bso31I	GGTCTC	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	47, 413
Bsp143I	GATC	4 cut(s)	4, 69, 157, 929
Bsp1720I	GCTNAGC	1 cut(s)	671
BspACI	CCGC	4 cut(s)	216, 579, 782, 969
BspCNI	CTCAG	2 cut(s)	441, 684
BspLI	GGNNCC	3 cut(s)	328, 439, 949
BspPI	GGATC	2 cut(s)	12, 924
BspT107I	GGYRCC	2 cut(s)	326, 947
BspTNI	GGTCTC	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	126, 888
BssMI	GATC	4 cut(s)	4, 69, 157, 929
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	435, 890
Bst4CI	ACNGT	1 cut(s)	326
Bst6I	CTCTTC	4 cut(s)	330, 513, 749, 803
BstC8I	GCNNGC	2 cut(s)	12, 876
BstDEI	CTNAG	3 cut(s)	428, 645, 671
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	6 cut(s)	55, 122, 184, 837, 854, 965
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	4 cut(s)	7, 72, 160, 932
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	4 cut(s)	4, 69, 157, 929
BstMWI	GCNNNNNNNGC	3 cut(s)	175, 224, 347
BstNI	CCWGG	2 cut(s)	435, 890
BstNSI	RCATGY	2 cut(s)	904, 961
BstPAI	GACNNNNGTC	1 cut(s)	529
BstSCI	CCNGG	2 cut(s)	433, 888
BstV1I	GCAGC	4 cut(s)	230, 251, 353, 374
BtgI	CCRYGG	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	762
BtsCI	GGATG	6 cut(s)	55, 122, 184, 837, 854, 965
Cac8I	GCNNGC	2 cut(s)	12, 876
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	3 cut(s)	67, 901, 958
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	3 cut(s)	428, 645, 671
DpnI	GATC	4 cut(s)	6, 71, 159, 931
DpnII	GATC	4 cut(s)	4, 69, 157, 929
Eam1104I	CTCTTC	4 cut(s)	330, 513, 749, 803
EarI	CTCTTC	4 cut(s)	330, 513, 749, 803
Eco24I	GRGCYC	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	433, 888
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	3 cut(s)	70, 904, 961
FaqI	GGGAC	3 cut(s)	605, 808, 871
FatI	CATG	3 cut(s)	66, 900, 957
FauI	CCCGC	1 cut(s)	789
FauNDI	CATATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	219, 240, 342, 363
FokI	GGATG	6 cut(s)	42, 109, 171, 824, 841, 952
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	219, 240, 342, 363
FspBI	CTAG	3 cut(s)	15, 48, 588
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	4 cut(s)	219, 240, 342, 363
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	3 cut(s)	70, 904, 961
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	6 cut(s)	119, 212, 458, 491, 829, 884
HpaI	GTTAAC	1 cut(s)	91
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	91, 446
Hpy188I	TCNGA	4 cut(s)	31, 431, 546, 807
Hpy188III	TCNNGA	3 cut(s)	37, 103, 464
Hpy8I	GTNNAC	2 cut(s)	91, 446
HpyAV	CCTTC	2 cut(s)	102, 818
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4V	TGCA	4 cut(s)	66, 362, 639, 915
HpyF10VI	GCNNNNNNNGC	3 cut(s)	175, 224, 347
HpyF3I	CTNAG	3 cut(s)	428, 645, 671
Hsp92II	CATG	3 cut(s)	70, 904, 961
HspAI	GCGC	1 cut(s)	668
KpnI	GGTACC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	4, 69, 157, 929
LmnI	GCTCC	2 cut(s)	703, 783
LpnPI	CCDG	9 cut(s)	129, 420, 447, 454, 692, 847, 875, 888, 902
Lsp1109I	GCAGC	4 cut(s)	230, 251, 353, 374
LweI	GCATC	3 cut(s)	64, 70, 259
MaeI	CTAG	3 cut(s)	15, 48, 588
MaeIII	GTNAC	2 cut(s)	37, 391
MalI	GATC	4 cut(s)	6, 71, 159, 931
MboI	GATC	4 cut(s)	4, 69, 157, 929
MboII	GAAGA	9 cut(s)	218, 221, 347, 530, 727, 749, 766, 820, 907
MhlI	GDGCHC	2 cut(s)	47, 413
MluCI	AATT	5 cut(s)	60, 655, 718, 813, 916
MlyI	GAGTC	2 cut(s)	485, 893
MmeI	TCCRAC	2 cut(s)	519, 882
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	2 cut(s)	90, 540
MslI	CAYNNNNRTG	3 cut(s)	258, 351, 956
MspA1I	CMGCKG	2 cut(s)	10, 971
MspR9I	CCNGG	2 cut(s)	435, 890
MvaI	CCWGG	2 cut(s)	435, 890
MwoI	GCNNNNNNNGC	3 cut(s)	175, 224, 347
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	4 cut(s)	4, 69, 157, 929
NlaIII	CATG	3 cut(s)	70, 904, 961
NlaIV	GGNNCC	3 cut(s)	328, 439, 949
NmuCI	GTSAC	2 cut(s)	37, 391
NspI	RCATGY	2 cut(s)	904, 961
PciI	ACATGT	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	4 cut(s)	119, 212, 458, 829
PkrI	GCNGC	4 cut(s)	220, 241, 343, 364
PleI	GAGTC	2 cut(s)	485, 892
PpsI	GAGTC	2 cut(s)	485, 892
PpuMI	RGGWCCY	1 cut(s)	437
PscI	ACATGT	1 cut(s)	957
PshAI	GACNNNNGTC	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	433, 888
PspGI	CCWGG	2 cut(s)	433, 888
PspN4I	GGNNCC	3 cut(s)	328, 439, 949
PspPI	GGNCC	1 cut(s)	437
PspPPI	RGGWCCY	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	3 cut(s)	258, 351, 956
SaqAI	TTAA	2 cut(s)	90, 540
SatI	GCNGC	4 cut(s)	219, 240, 342, 363
Sau3AI	GATC	4 cut(s)	4, 69, 157, 929
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	2 cut(s)	485, 893
ScrFI	CCNGG	2 cut(s)	435, 890
SduI	GDGCHC	2 cut(s)	47, 413
SetI	ASST	4 cut(s)	12, 148, 346, 708
SfaNI	GCATC	3 cut(s)	64, 70, 259
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	3 cut(s)	258, 351, 956
SmlI	CTYRAG	3 cut(s)	245, 406, 462
SmoI	CTYRAG	3 cut(s)	245, 406, 462
Sse9I	AATT	5 cut(s)	60, 655, 718, 813, 916
SsiI	CCGC	4 cut(s)	216, 579, 782, 969
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	3 cut(s)	15, 48, 588
StyD4I	CCNGG	2 cut(s)	433, 888
TaaI	ACNGT	1 cut(s)	326
TaqI	TCGA	3 cut(s)	72, 78, 191
TasI	AATT	5 cut(s)	60, 655, 718, 813, 916
TfiI	GAWTC	4 cut(s)	119, 212, 458, 829
Tru1I	TTAA	2 cut(s)	90, 540
Tru9I	TTAA	2 cut(s)	90, 540
TseFI	GTSAC	2 cut(s)	37, 391
TseI	GCWGC	4 cut(s)	218, 239, 341, 362
Tsp45I	GTSAC	2 cut(s)	37, 391
TspDTI	ATGAA	5 cut(s)	111, 219, 744, 837, 843
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	2 cut(s)	718, 813
XceI	RCATGY	2 cut(s)	904, 961
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	3 cut(s)	15, 48, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.