Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Reverse (-)

59536238 .. 59537986

Gene Structure 1749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G032380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGATCAGCTGGCTAGTAGTGTGAAATCGGAACTCGTGACGAGCCCTAGTAAGCGTCCAATTGGCATGATCGAAGTCGATGCTTTGGTTAACAAGTGTGTCAAGAGAAGGAGGAGGGATTCATCCACGGCTGTTTCACCAACAGGTCATAATGCTGATCAACAACAGCAGACACAGCCTAACCATCCATCGAGTACTACCACTACCACCACTACTACTACTACTGTCAAAAGAAGTTCCAGATTTCGCGGAGTCAGCAGGCATAGATGGACAGGGAGATATGAAGCTCATTTATGGGACAAGGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGTTTATCTGGGGGCATATGATGAAGAAGAATCCGCAGCAAGAGCATATGATTTGGCAGCACTCAAGTACTGGGGAACATCAACTTTTACAAATTTTCCGGTGTCTGATTACGAGAATGAAATTGATCTAATGAACACCCTAACAAAAGAAGAATACTTGGCCTCTCTAAGAAGAAGAAGCAGTGGCTTTTCAAGAGGTGTATCCAAGTACAGAGGAGTTGCAAGGCATCATCACAATGGGAGATGGGAAGCAAGGATTGGGAGAGTGTTTGGAAACAAGTATCTGTATCTTGGCACTTACGGTACCCAAGAAGAGGCAGCTCACGCCTATGATATTGCAGCGATAGAATACAGAGGCATAAACGCTGTGACCAACTTTGACTTGAGCACATACATAAGATGGCTCAGACCAGGACCCAGTTCACTTGTTGCTAATTCTCAAGAACAACCAAAACCAAATATTGCTGACTCCAACAGCAACAATCCAAGCAAGGAAGAGAGACCAATGTCAATCTTTAATCCAAATAACTCATTCGCAGTAGAGGACATAGACACCACAAGAACTAGGGACATTTTCCAAAGACAGAATACTATGCCCCCCATCAGTCCTACTTGCACCCCTAAGTCATCTAATTCCCCAACCGCACTCAGCCTCCTCCTCAAATCCTCCATATTCAAGGAGCTGGTGGAGAAGAATTTGAATGATGAAACCGAAGAAAGTGACAATGAGAAGAGTGATATAATAAAGAACTTGCTCCCGCAGACAAACGGGACTGAAAATCTGAAGAGAATTTTGTATGAAGGGATTCACAACATCCCTTTTTCGTGTTCATCCAACAGGGATATGTTGCCTGCTTTAGAGTCCCGGGAGAAGAACATGCTACCATTATGCAATTCGAGGGGGCAATCCCTTTGGAATAATGGTGCCATCAACATGTTCTCATCTTCTGATTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

433

Amino Acids

48.88

Weight (kDa)

9.14

Isoelectric Point (pI)

61.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	80 - 139	1.8e-11	AP2 domain
AP2	PF00847	182 - 233	2.2e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	2 cut(s)	644, 1265
AccII	CGCG	1 cut(s)	249
AciI	CCGC	4 cut(s)	249, 375, 984, 1100
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	433, 1036, 1131
AcuI	CTGAAG	1 cut(s)	1145
AfaI	GTAC	4 cut(s)	196, 410, 551, 646
AfiI	CCNNNNNNNGG	1 cut(s)	655
AflIII	ACRYGT	1 cut(s)	1275
AgsI	TTSAA	3 cut(s)	534, 1018, 1042
AhdI	GACNNNNNGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	751
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AluBI	AGCT	5 cut(s)	10, 287, 662, 1024, 1299
AluI	AGCT	5 cut(s)	10, 287, 662, 1024, 1299
Alw21I	GWGCWC	1 cut(s)	731
Alw26I	GTCTC	1 cut(s)	835
AlwI	GGATC	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	1206
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	4 cut(s)	377, 398, 659, 680
ApoI	RAATTY	3 cut(s)	433, 1036, 1131
Asp700I	GAANNNNTTC	1 cut(s)	1146
Asp718I	GGTACC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	755
AsuC2I	CCSGG	2 cut(s)	1207, 1208
AsuHPI	GGTGA	1 cut(s)	129
AvaI	CYCGRG	1 cut(s)	1206
AvaII	GGWCC	1 cut(s)	755
BanI	GGYRCC	2 cut(s)	644, 1265
BanII	GRGCYC	1 cut(s)	47
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	1 cut(s)	731
BbvI	GCAGC	4 cut(s)	389, 410, 671, 692
BccI	CCATC	7 cut(s)	192, 196, 261, 579, 735, 950, 1277
BceAI	ACGGC	1 cut(s)	144
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	1 cut(s)	753
BciVI	GTATCC	1 cut(s)	553
BclI	TGATCA	1 cut(s)	157
BcnI	CCSGG	2 cut(s)	1207, 1208
BcoDI	GTCTC	1 cut(s)	835
BfaI	CTAG	3 cut(s)	15, 48, 906
BfuI	GTATCC	1 cut(s)	553
BisI	GCNGC	4 cut(s)	378, 399, 660, 681
BlsI	GCNGC	4 cut(s)	379, 400, 661, 682
BmcAI	AGTACT	2 cut(s)	196, 410
Bme1390I	CCNGG	3 cut(s)	753, 1207, 1208
Bme18I	GGWCC	1 cut(s)	755
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmeT110I	CYCGRG	1 cut(s)	1206
BmgT120I	GGNCC	1 cut(s)	755
BmiI	GGNNCC	3 cut(s)	646, 757, 1267
BmrFI	CCNGG	3 cut(s)	753, 1207, 1208
BmrI	ACTGGG	2 cut(s)	421, 753
BmsI	GCATC	2 cut(s)	70, 577
BmuI	ACTGGG	2 cut(s)	421, 753
BoxI	GACNNNNGTC	1 cut(s)	847
BpuEI	CTTGAG	3 cut(s)	389, 745, 765
BpuMI	CCSGG	2 cut(s)	1207, 1208
BsaI	GGTCTC	1 cut(s)	835
BsaJI	CCNNGG	2 cut(s)	126, 1206
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	2 cut(s)	416, 759
BseBI	CCWGG	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	126, 1206
BseGI	GGATG	4 cut(s)	122, 184, 1155, 1172
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMII	CTCAG	2 cut(s)	760, 1003
BseNI	ACTGG	2 cut(s)	416, 759
BseRI	GAGGAG	4 cut(s)	127, 570, 986, 989
BseXI	GCAGC	4 cut(s)	389, 410, 671, 692
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	2 cut(s)	644, 1265
BsiHKAI	GWGCWC	1 cut(s)	731
BsiHKCI	CYCGRG	1 cut(s)	1206
BsiSI	CCGG	2 cut(s)	440, 1207
BslFI	GGGAC	4 cut(s)	311, 923, 1126, 1189
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	1 cut(s)	835
BsmFI	GGGAC	4 cut(s)	311, 923, 1126, 1189
BsnI	GGCC	1 cut(s)	503
Bso31I	GGTCTC	1 cut(s)	835
BsoBI	CYCGRG	1 cut(s)	1206
Bsp1286I	GDGCHC	2 cut(s)	47, 731
Bsp143I	GATC	4 cut(s)	4, 69, 157, 466
BspACI	CCGC	4 cut(s)	249, 375, 984, 1100
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	2 cut(s)	759, 1002
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	646, 757, 1267
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	644, 1265
BspTNI	GGTCTC	1 cut(s)	835
BsrI	ACTGG	2 cut(s)	416, 759
BssECI	CCNNGG	2 cut(s)	126, 1206
BssMI	GATC	4 cut(s)	4, 69, 157, 466
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	753
Bst4CI	ACNGT	2 cut(s)	226, 644
Bst6I	CTCTTC	4 cut(s)	648, 831, 1067, 1121
BstC8I	GCNNGC	3 cut(s)	12, 260, 1194
BstDEI	CTNAG	4 cut(s)	509, 746, 963, 989
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	4 cut(s)	122, 184, 1155, 1172
BstFNI	CGCG	1 cut(s)	249
BstKTI	GATC	4 cut(s)	7, 72, 160, 469
BstMAI	GTCTC	1 cut(s)	835
BstMBI	GATC	4 cut(s)	4, 69, 157, 466
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 255, 383, 665
BstNI	CCWGG	1 cut(s)	753
BstNSI	RCATGY	2 cut(s)	1222, 1279
BstPAI	GACNNNNGTC	1 cut(s)	847
BstSCI	CCNGG	3 cut(s)	751, 1205, 1206
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	4 cut(s)	389, 410, 671, 692
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	4 cut(s)	122, 184, 1155, 1172
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	3 cut(s)	12, 260, 1194
Cfr13I	GGNCC	1 cut(s)	755
Cfr9I	CCCGGG	1 cut(s)	1206
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	4 cut(s)	195, 409, 550, 645
CviAII	CATG	3 cut(s)	67, 1219, 1276
CviQI	GTAC	4 cut(s)	195, 409, 550, 645
DdeI	CTNAG	4 cut(s)	509, 746, 963, 989
DpnI	GATC	4 cut(s)	6, 71, 159, 468
DpnII	GATC	4 cut(s)	4, 69, 157, 466
DriI	GACNNNNNGTC	1 cut(s)	304
Eam1104I	CTCTTC	4 cut(s)	648, 831, 1067, 1121
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	4 cut(s)	648, 831, 1067, 1121
Eco24I	GRGCYC	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	835
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	1145
Eco88I	CYCGRG	1 cut(s)	1206
EcoO109I	RGGNCCY	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	751
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	3 cut(s)	70, 1222, 1279
FaqI	GGGAC	4 cut(s)	311, 923, 1126, 1189
FatI	CATG	3 cut(s)	66, 1218, 1275
FauI	CCCGC	1 cut(s)	1107
FauNDI	CATATG	2 cut(s)	358, 388
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	378, 399, 660, 681
FokI	GGATG	4 cut(s)	109, 171, 1142, 1159
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	4 cut(s)	378, 399, 660, 681
FspBI	CTAG	3 cut(s)	15, 48, 906
GluI	GCNGC	4 cut(s)	378, 399, 660, 681
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	2 cut(s)	440, 1207
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	70, 1222, 1279
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	7 cut(s)	119, 252, 313, 371, 809, 1147, 1202
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	440, 1207
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	2 cut(s)	91, 764
Hpy188I	TCNGA	5 cut(s)	31, 448, 749, 1125, 1291
Hpy188III	TCNNGA	5 cut(s)	37, 103, 240, 534, 782
Hpy8I	GTNNAC	2 cut(s)	91, 764
HpyAV	CCTTC	3 cut(s)	102, 325, 1136
HpyCH4III	ACNGT	2 cut(s)	226, 644
HpyCH4V	TGCA	4 cut(s)	563, 680, 957, 1233
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 255, 383, 665
HpyF3I	CTNAG	4 cut(s)	509, 746, 963, 989
Hsp92II	CATG	3 cut(s)	70, 1222, 1279
KpnI	GGTACC	1 cut(s)	648
Ksp22I	TGATCA	1 cut(s)	157
KspAI	GTTAAC	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	4, 69, 157, 466
LmnI	GCTCC	2 cut(s)	1021, 1101
Lsp1109I	GCAGC	4 cut(s)	389, 410, 671, 692
LweI	GCATC	2 cut(s)	70, 577
MaeI	CTAG	3 cut(s)	15, 48, 906
MaeIII	GTNAC	3 cut(s)	37, 709, 1061
MalI	GATC	4 cut(s)	6, 71, 159, 468
MboI	GATC	4 cut(s)	4, 69, 157, 466
MfeI	CAATTG	1 cut(s)	60
MhlI	GDGCHC	2 cut(s)	47, 731
MluCI	AATT	8 cut(s)	60, 433, 462, 775, 973, 1036, 1131, 1234
MlyI	GAGTC	3 cut(s)	261, 803, 1211
MmeI	TCCRAC	3 cut(s)	341, 837, 1200
MroXI	GAANNNNTTC	1 cut(s)	1146
MseI	TTAA	2 cut(s)	90, 858
MslI	CAYNNNNRTG	3 cut(s)	576, 669, 1274
MspA1I	CMGCKG	2 cut(s)	10, 1299
MspI	CCGG	2 cut(s)	440, 1207
MspR9I	CCNGG	3 cut(s)	753, 1207, 1208
MunI	CAATTG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	753
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	4 cut(s)	175, 255, 383, 665
NciI	CCSGG	2 cut(s)	1207, 1208
NdeI	CATATG	2 cut(s)	358, 388
NdeII	GATC	4 cut(s)	4, 69, 157, 466
NlaIII	CATG	3 cut(s)	70, 1222, 1279
NlaIV	GGNNCC	3 cut(s)	646, 757, 1267
NmuCI	GTSAC	3 cut(s)	37, 709, 1061
NspI	RCATGY	2 cut(s)	1222, 1279
PciI	ACATGT	1 cut(s)	1275
PdmI	GAANNNNTTC	1 cut(s)	1146
PfeI	GAWTC	4 cut(s)	119, 313, 371, 1147
PkrI	GCNGC	4 cut(s)	379, 400, 661, 682
PleI	GAGTC	3 cut(s)	260, 803, 1210
PpsI	GAGTC	3 cut(s)	260, 803, 1210
PpuMI	RGGWCCY	1 cut(s)	755
PscI	ACATGT	1 cut(s)	1275
PshAI	GACNNNNGTC	1 cut(s)	847
Psp5II	RGGWCCY	1 cut(s)	755
Psp6I	CCWGG	1 cut(s)	751
PspGI	CCWGG	1 cut(s)	751
PspN4I	GGNNCC	3 cut(s)	646, 757, 1267
PspPI	GGNCC	1 cut(s)	755
PspPPI	RGGWCCY	1 cut(s)	755
PvuII	CAGCTG	2 cut(s)	10, 1299
RsaI	GTAC	4 cut(s)	196, 410, 551, 646
RsaNI	GTAC	4 cut(s)	195, 409, 550, 645
RseI	CAYNNNNRTG	3 cut(s)	576, 669, 1274
SaqAI	TTAA	2 cut(s)	90, 858
SatI	GCNGC	4 cut(s)	378, 399, 660, 681
Sau3AI	GATC	4 cut(s)	4, 69, 157, 466
Sau96I	GGNCC	1 cut(s)	755
ScaI	AGTACT	2 cut(s)	196, 410
SchI	GAGTC	3 cut(s)	261, 803, 1211
ScrFI	CCNGG	3 cut(s)	753, 1207, 1208
SduI	GDGCHC	2 cut(s)	47, 731
SetI	ASST	7 cut(s)	12, 148, 289, 541, 664, 1026, 1301
SfaNI	GCATC	2 cut(s)	70, 577
SinI	GGWCC	1 cut(s)	755
SmaI	CCCGGG	1 cut(s)	1208
SmiMI	CAYNNNNRTG	3 cut(s)	576, 669, 1274
SmlI	CTYRAG	3 cut(s)	404, 724, 780
SmoI	CTYRAG	3 cut(s)	404, 724, 780
Sse9I	AATT	8 cut(s)	60, 433, 462, 775, 973, 1036, 1131, 1234
SsiI	CCGC	4 cut(s)	249, 375, 984, 1100
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	3 cut(s)	15, 48, 906
StyD4I	CCNGG	3 cut(s)	751, 1205, 1206
TaaI	ACNGT	2 cut(s)	226, 644
TaqI	TCGA	4 cut(s)	72, 78, 191, 1238
TasI	AATT	8 cut(s)	60, 433, 462, 775, 973, 1036, 1131, 1234
TatI	WGTACW	3 cut(s)	194, 408, 549
TfiI	GAWTC	4 cut(s)	119, 313, 371, 1147
Tru1I	TTAA	2 cut(s)	90, 858
Tru9I	TTAA	2 cut(s)	90, 858
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	3 cut(s)	37, 709, 1061
TseI	GCWGC	4 cut(s)	377, 398, 659, 680
Tsp45I	GTSAC	3 cut(s)	37, 709, 1061
TspDTI	ATGAA	8 cut(s)	111, 297, 378, 474, 488, 1062, 1155, 1161
TspMI	CCCGGG	1 cut(s)	1206
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	3 cut(s)	433, 1036, 1131
XceI	RCATGY	2 cut(s)	1222, 1279
XmaI	CCCGGG	1 cut(s)	1206
XmnI	GAANNNNTTC	1 cut(s)	1146
XspI	CTAG	3 cut(s)	15, 48, 906
ZrmI	AGTACT	2 cut(s)	196, 410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.