FvH4_6g49200

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
36921334 .. 36923004
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g49200.t1

Sequence Viewer

Length: 1263 bp
ATGGATCAGCAGCTGATGATGGTGAAGAATGAGGAGACCCCAGCTGGGAGGCGCCGCTTGAGCGCCGCTGATCGCGAGGCAAATCAGGCAGCACGGTGTGTTAAGAGACGCCGAAGAGATCCACCTGCTGTTATTGTTGACATTACGAAGACTGAGCTGCCTCTACCAGAAAAGCCAGCTGATCCAGCTTCTGTAGCTGCCACAACGAAGAGGAGCTCAAGGTTTCGCGGTGTCAGCAGACATAGGTGGACTGGCCGATTTGAAGCTCACTTGTGGGACAAGCTTTCTTGGAATGTAACACAGAAGAAAAAAGGGAAACAAGTCTATCTTGGGGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGACTTAGCAGCTCTCAAGTACTGGGGAACCTCAACTTTCACAAACTTTCCGATATCAGAGTATGAGAAAGAAATTGAGATTATGCAATCTGTATCAAAAGAAGAGTATCTGGCATCCCTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTGTCTAAGTACAGAGGAGTAGCAAGGCACCATCACAATGGTAGATGGGAAGCAAGAATTGGAAGGGTTTTCGGAAACAAGTACCTCTACCTTGGCACTTACAGCACCCAAGAGGAAGCAGCTCGCGCCTATGACATTGCGGCAATTGAGTACAGAGGGATCAATGCTGTGACCAACTTCGACTTGAGCTCTTACATAAGATGGTTGAAGCCGAAAGTGGACAGCACAATATCAGCTCAAGAATTAGAGACAGTTGCAGAGCCTGAGAATATGCCATTCATGGCCAGCAACTATATCCCAGCAGAGGAATCCTCCTTGTCACAGATAAACCCTTTTGCCTCCGATTACTTGAACTCACCTCGAAAGCAAGAAGTCTCTCTGAGCAACGTTCCTCTCAACACAATCAGCAAGTCATCCTCTCCAACCGCACTTGGCCTCCTCCTACAGTCTTCAATATTCAGAGAACTGGTGCAGAAGAACTCAAATTACTCGGAGGATGAAAGCACCGATGGAGAAGACCAAAAGAACCATGCACATGGTGGGAGTGACGACGAGTATGGTGGACTTTTTTCTTATGACCAAATTGGCGCCAATAGCTCTTTAGTTTCCTCTTCCAACGAGGAAAGCATAGAACTGCAAGAAAGAGAGCTCCTTCACTCCCCATGGAACAACTTCACGAGCACAATGCTACTTAATCAAACAACAAAAGCAGATGCCTCAGAGTCTCTGTTCTTCTTTTCTTAG

Protein Analysis

421

Amino Acids

47.43

Weight (kDa)

6.31

Isoelectric Point (pI)

58.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 73 - 132 2.7e-12 AP2 domain
AP2 PF00847 175 - 226 2.2e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 3 cut(s) 51, 546, 1106
AccII CGCG 3 cut(s) 75, 228, 645
AciI CCGC 5 cut(s) 55, 66, 228, 659, 945
AclI AACGTT 1 cut(s) 906
AclWI GGATC 4 cut(s) 12, 113, 176, 686
AcoI YGGCCR 2 cut(s) 253, 801
AcyI GRCGYC 3 cut(s) 52, 109, 1107
AdeI CACNNNGTG 2 cut(s) 98, 1058
AfaI GTAC 4 cut(s) 389, 530, 602, 671
AfiI CCNNNNNNNGG 2 cut(s) 45, 823
AgsI TTSAA 5 cut(s) 263, 513, 727, 871, 972
AjuI GAANNNNNNNTTGG 2 cut(s) 561, 593
Alw21I GWGCWC 4 cut(s) 218, 710, 1170, 1202
Alw26I GTCTC 5 cut(s) 29, 100, 761, 898, 1248
AlwI GGATC 4 cut(s) 12, 113, 176, 686
AlwNI CAGNNNCTG 3 cut(s) 13, 191, 782
AoxI GGCC 3 cut(s) 253, 801, 952
ApeKI GCWGC 7 cut(s) 10, 89, 157, 197, 356, 377, 638
Asp700I GAANNNNTTC 1 cut(s) 1190
AspLEI GCGC 4 cut(s) 54, 65, 647, 1109
AsuHPI GGTGA 2 cut(s) 34, 867
BalI TGGCCA 1 cut(s) 803
BanI GGYRCC 3 cut(s) 51, 546, 1106
BanII GRGCYC 3 cut(s) 218, 710, 1170
BauI CACGAG 1 cut(s) 1195
BbsI GAAGAC 3 cut(s) 155, 960, 1041
Bbv12I GWGCWC 4 cut(s) 218, 710, 1170, 1202
BbvI GCAGC 7 cut(s) 22, 101, 144, 184, 343, 389, 650
BccI CCATC 5 cut(s) 13, 558, 558, 714, 1022
BcgI CGANNNNNNTGC 2 cut(s) 1186, 1220
BcoDI GTCTC 5 cut(s) 29, 100, 761, 898, 1248
BfmI CTRYAG 2 cut(s) 192, 962
BfoI RGCGCY 3 cut(s) 55, 66, 1110
BfuAI ACCTGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 389
BmiI GGNNCC 4 cut(s) 53, 397, 548, 1108
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 2 cut(s) 491, 1222
BmuI ACTGGG 1 cut(s) 400
BpiI GAAGAC 3 cut(s) 155, 960, 1041
BplI GAGNNNNNCTC 2 cut(s) 815, 847
BpuEI CTTGAG 5 cut(s) 79, 202, 368, 724, 741
BsaHI GRCGYC 3 cut(s) 52, 109, 1107
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 610, 1181
BsaXI ACNNNNNCTCC 2 cut(s) 939, 969
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 823
Bse1I ACTGG 3 cut(s) 256, 395, 990
Bse3DI GCAATG 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 610, 1181
BseGI GGATG 3 cut(s) 482, 932, 1021
BseLI CCNNNNNNNGG 2 cut(s) 45, 823
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 4 cut(s) 144, 774, 890, 1251
BseNI ACTGG 3 cut(s) 256, 395, 990
BseRI GAGGAG 4 cut(s) 47, 226, 549, 947
BseXI GCAGC 7 cut(s) 22, 101, 144, 184, 343, 389, 650
BseYI CCCAGC 3 cut(s) 40, 44, 817
BsgI GTGCAG 1 cut(s) 1010
Bsh1236I CGCG 3 cut(s) 75, 228, 645
BshFI GGCC 3 cut(s) 255, 803, 954
BshNI GGYRCC 3 cut(s) 51, 546, 1106
BsiHKAI GWGCWC 4 cut(s) 218, 710, 1170, 1202
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 2 cut(s) 45, 823
BsmAI GTCTC 5 cut(s) 29, 100, 761, 898, 1248
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 3 cut(s) 255, 803, 954
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 4 cut(s) 218, 710, 1170, 1202
Bsp143I GATC 5 cut(s) 4, 70, 118, 181, 678
Bsp19I CCATGG 1 cut(s) 1181
Bsp68I TCGCGA 1 cut(s) 75
BspACI CCGC 5 cut(s) 55, 66, 228, 659, 945
BspANI GGCC 3 cut(s) 255, 803, 954
BspCNI CTCAG 4 cut(s) 145, 775, 891, 1250
BspFNI CGCG 3 cut(s) 75, 228, 645
BspLI GGNNCC 4 cut(s) 53, 397, 548, 1108
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 4 cut(s) 12, 113, 176, 686
BspT107I GGYRCC 3 cut(s) 51, 546, 1106
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 1 cut(s) 654
BsrI ACTGG 3 cut(s) 256, 395, 990
BssECI CCNNGG 2 cut(s) 610, 1181
BssMI GATC 5 cut(s) 4, 70, 118, 181, 678
BssNI GRCGYC 3 cut(s) 52, 109, 1107
BssSI CACGAG 1 cut(s) 1195
BssT1I CCWWGG 2 cut(s) 610, 1181
Bst2BI CACGAG 1 cut(s) 1195
Bst4CI ACNGT 3 cut(s) 96, 772, 966
Bst6I CTCTTC 4 cut(s) 109, 203, 465, 1135
BstACI GRCGYC 3 cut(s) 52, 109, 1107
BstC8I GCNNGC 3 cut(s) 177, 643, 805
BstDEI CTNAG 8 cut(s) 153, 373, 488, 525, 783, 899, 1237, 1260
BstDSI CCRYGG 1 cut(s) 1181
BstF5I GGATG 3 cut(s) 482, 932, 1021
BstFNI CGCG 3 cut(s) 75, 228, 645
BstH2I RGCGCY 3 cut(s) 55, 66, 1110
BstHHI GCGC 4 cut(s) 54, 65, 647, 1109
BstKTI GATC 5 cut(s) 7, 73, 121, 184, 681
BstMAI GTCTC 5 cut(s) 29, 100, 761, 898, 1248
BstMBI GATC 5 cut(s) 4, 70, 118, 181, 678
BstMWI GCNNNNNNNGC 9 cut(s) 60, 86, 185, 194, 234, 362, 621, 644, 1113
BstSFI CTRYAG 2 cut(s) 192, 962
BstUI CGCG 3 cut(s) 75, 228, 645
BstV1I GCAGC 7 cut(s) 22, 101, 144, 184, 343, 389, 650
BstV2I GAAGAC 3 cut(s) 155, 960, 1041
BstX2I RGATCY 1 cut(s) 118
BstXI CCANNNNNNTGG 2 cut(s) 557, 1055
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 3 cut(s) 255, 803, 954
BtgI CCRYGG 1 cut(s) 1181
BtsCI GGATG 3 cut(s) 482, 932, 1021
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 1 cut(s) 508
BtuMI TCGCGA 1 cut(s) 75
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 3 cut(s) 177, 643, 805
CaiI CAGNNNCTG 3 cut(s) 13, 191, 782
CfoI GCGC 4 cut(s) 54, 65, 647, 1109
CseI GACGC 1 cut(s) 117
Csp6I GTAC 4 cut(s) 388, 529, 601, 670
CviAII CATG 4 cut(s) 799, 1049, 1055, 1182
CviQI GTAC 4 cut(s) 388, 529, 601, 670
DdeI CTNAG 8 cut(s) 153, 373, 488, 525, 783, 899, 1237, 1260
DinI GGCGCC 2 cut(s) 53, 1108
DpnI GATC 5 cut(s) 6, 72, 120, 183, 680
DpnII GATC 5 cut(s) 4, 70, 118, 181, 678
DraIII CACNNNGTG 2 cut(s) 98, 1058
EaeI YGGCCR 2 cut(s) 253, 801
Eam1104I CTCTTC 4 cut(s) 109, 203, 465, 1135
EarI CTCTTC 4 cut(s) 109, 203, 465, 1135
Ecl136II GAGCTC 3 cut(s) 216, 708, 1168
Eco130I CCWWGG 2 cut(s) 610, 1181
Eco24I GRGCYC 3 cut(s) 218, 710, 1170
Eco31I GGTCTC 1 cut(s) 29
Eco32I GATATC 1 cut(s) 423
Eco53kI GAGCTC 3 cut(s) 216, 708, 1168
EcoICRI GAGCTC 3 cut(s) 216, 708, 1168
EcoRV GATATC 1 cut(s) 423
EcoT14I CCWWGG 2 cut(s) 610, 1181
EcoT38I GRGCYC 3 cut(s) 218, 710, 1170
EgeI GGCGCC 2 cut(s) 53, 1108
EheI GGCGCC 2 cut(s) 53, 1108
ErhI CCWWGG 2 cut(s) 610, 1181
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 4 cut(s) 802, 1052, 1058, 1185
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 290
FatI CATG 4 cut(s) 798, 1048, 1054, 1181
FauNDI CATATG 1 cut(s) 367
FokI GGATG 3 cut(s) 469, 919, 1028
FriOI GRGCYC 3 cut(s) 218, 710, 1170
GlaI GCGC 4 cut(s) 53, 64, 646, 1108
GsaI CCCAGC 3 cut(s) 44, 48, 821
HaeII RGCGCY 3 cut(s) 55, 66, 1110
HaeIII GGCC 3 cut(s) 255, 803, 954
HgaI GACGC 1 cut(s) 117
HhaI GCGC 4 cut(s) 54, 65, 647, 1109
Hin1I GRCGYC 3 cut(s) 52, 109, 1107
Hin1II CATG 4 cut(s) 802, 1052, 1058, 1185
Hin6I GCGC 4 cut(s) 52, 63, 645, 1107
HinP1I GCGC 4 cut(s) 52, 63, 645, 1107
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 350, 827, 1241
HphI GGTGA 2 cut(s) 34, 867
Hpy166II GTNNAC 4 cut(s) 139, 249, 739, 1082
Hpy188I TCNGA 8 cut(s) 420, 427, 593, 862, 900, 980, 1012, 1240
Hpy188III TCNNGA 4 cut(s) 74, 513, 758, 1195
Hpy8I GTNNAC 4 cut(s) 139, 249, 739, 1082
Hpy99I CGWCG 1 cut(s) 1073
HpyAV CCTTC 2 cut(s) 576, 1181
HpyCH4III ACNGT 3 cut(s) 96, 772, 966
HpyCH4IV ACGT 1 cut(s) 906
HpyCH4V TGCA 6 cut(s) 359, 454, 776, 991, 1052, 1156
HpyF10VI GCNNNNNNNGC 9 cut(s) 60, 86, 185, 194, 234, 362, 621, 644, 1113
HpyF3I CTNAG 8 cut(s) 153, 373, 488, 525, 783, 899, 1237, 1260
HpySE526I ACGT 1 cut(s) 906
Hsp92I GRCGYC 3 cut(s) 52, 109, 1107
Hsp92II CATG 4 cut(s) 802, 1052, 1058, 1185
HspAI GCGC 4 cut(s) 52, 63, 645, 1107
KasI GGCGCC 2 cut(s) 51, 1106
Kzo9I GATC 5 cut(s) 4, 70, 118, 181, 678
LmnI GCTCC 2 cut(s) 213, 1173
Lsp1109I GCAGC 7 cut(s) 22, 101, 144, 184, 343, 389, 650
LweI GCATC 2 cut(s) 491, 1222
MaeII ACGT 1 cut(s) 906
MaeIII GTNAC 4 cut(s) 295, 688, 837, 1064
MalI GATC 5 cut(s) 6, 72, 120, 183, 680
MboI GATC 5 cut(s) 4, 70, 118, 181, 678
MfeI CAATTG 1 cut(s) 663
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 4 cut(s) 218, 710, 1170, 1202
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 6 cut(s) 441, 576, 663, 761, 1003, 1101
MluNI TGGCCA 1 cut(s) 803
Mly113I GGCGCC 2 cut(s) 52, 1107
MlyI GAGTC 1 cut(s) 1250
MmeI TCCRAC 2 cut(s) 965, 1158
Mox20I TGGCCA 1 cut(s) 803
MroXI GAANNNNTTC 1 cut(s) 1190
MscI TGGCCA 1 cut(s) 803
MseI TTAA 2 cut(s) 102, 1212
MslI CAYNNNNRTG 2 cut(s) 555, 1053
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 4 cut(s) 13, 44, 68, 179
MunI CAATTG 1 cut(s) 663
MvnI CGCG 3 cut(s) 75, 228, 645
MwoI GCNNNNNNNGC 9 cut(s) 60, 86, 185, 194, 234, 362, 621, 644, 1113
NarI GGCGCC 2 cut(s) 52, 1107
NcoI CCATGG 1 cut(s) 1181
NdeI CATATG 1 cut(s) 367
NdeII GATC 5 cut(s) 4, 70, 118, 181, 678
NlaIII CATG 4 cut(s) 802, 1052, 1058, 1185
NlaIV GGNNCC 4 cut(s) 53, 397, 548, 1108
NmuCI GTSAC 3 cut(s) 688, 837, 1064
NruI TCGCGA 1 cut(s) 75
PaqCI CACCTGC 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 1190
PfeI GAWTC 2 cut(s) 350, 827
PleI GAGTC 1 cut(s) 1249
PluTI GGCGCC 2 cut(s) 55, 1110
PpsI GAGTC 1 cut(s) 1249
Psp124BI GAGCTC 3 cut(s) 218, 710, 1170
Psp1406I AACGTT 1 cut(s) 906
PspFI CCCAGC 3 cut(s) 40, 44, 817
PspN4I GGNNCC 4 cut(s) 53, 397, 548, 1108
PsrI GAACNNNNNNTAC 2 cut(s) 989, 1021
PstNI CAGNNNCTG 3 cut(s) 13, 191, 782
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 3 cut(s) 13, 44, 179
RruI TCGCGA 1 cut(s) 75
RsaI GTAC 4 cut(s) 389, 530, 602, 671
RsaNI GTAC 4 cut(s) 388, 529, 601, 670
RseI CAYNNNNRTG 2 cut(s) 555, 1053
SacI GAGCTC 3 cut(s) 218, 710, 1170
SaqAI TTAA 2 cut(s) 102, 1212
Sau3AI GATC 5 cut(s) 4, 70, 118, 181, 678
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 1 cut(s) 1250
SduI GDGCHC 4 cut(s) 218, 710, 1170, 1202
SfaNI GCATC 2 cut(s) 491, 1222
SfcI CTRYAG 2 cut(s) 192, 962
SfoI GGCGCC 2 cut(s) 53, 1108
SmiMI CAYNNNNRTG 2 cut(s) 555, 1053
SmlI CTYRAG 5 cut(s) 58, 217, 383, 703, 756
SmoI CTYRAG 5 cut(s) 58, 217, 383, 703, 756
Sse9I AATT 6 cut(s) 441, 576, 663, 761, 1003, 1101
SsiI CCGC 5 cut(s) 55, 66, 228, 659, 945
SspDI GGCGCC 2 cut(s) 51, 1106
SspI AATATT 1 cut(s) 975
SstI GAGCTC 3 cut(s) 218, 710, 1170
StyI CCWWGG 2 cut(s) 610, 1181
TaaI ACNGT 3 cut(s) 96, 772, 966
TaiI ACGT 1 cut(s) 909
TaqI TCGA 2 cut(s) 699, 880
TasI AATT 6 cut(s) 441, 576, 663, 761, 1003, 1101
TatI WGTACW 3 cut(s) 387, 528, 669
TauI GCSGC 3 cut(s) 57, 68, 662
TfiI GAWTC 2 cut(s) 350, 827
Tru1I TTAA 2 cut(s) 102, 1212
Tru9I TTAA 2 cut(s) 102, 1212
TscAI CASTG 1 cut(s) 508
TseFI GTSAC 3 cut(s) 688, 837, 1064
TseI GCWGC 7 cut(s) 10, 89, 157, 197, 356, 377, 638
Tsp45I GTSAC 3 cut(s) 688, 837, 1064
TspDTI ATGAA 3 cut(s) 357, 787, 1032
TspRI CASTG 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 1055
XmnI GAANNNNTTC 1 cut(s) 1190
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.