Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004539

Physical Location & Seq

Genomic Coordinates Reverse (-)

76684430 .. 76686759

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG590100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCAATCTGTAACAAAAGAAGAATATCTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTTTCAAGAGGTGTGTCCAAGTACAGAGGAGTAGCAAGGCACCATCACAATGGCAGATGGGAAGCAAGAATCGGAAGAGTTTTCGGAAACAAGTACCTCTACCTTGGCACTTACAGCACCCAAGAGGAAGCAGCTCGCGCCTATGACATTGCGGCAATTGAGTACAGAGGGATCAATGCTGTGACCAACTTCGACTTGAGCTCTTACATTAGATGGTTAAAGCCAAAAGTAGACAGCACAATAGCAGCTCAAGAATTAGAGACAGTTGCAGAGCCTGAAAATATCCCATTCATGGCCAGCAACTACATCCCAACAGAGGAATCCCCCTTGTCACATACAAACCCTTTTGCCTCTGACTACTTGACCTCGCCAAAGCAAGAAGTGTCCAGGAGCAACGTCCCTCTCGACTCAAGCAGCAAGTCATCCTCTCCAACCGCACTTGGCCTCCTCCTTCAGTCTTCTATATTCAGAGAACTGGTTCAGAAGAACTCGAATTACTCGGAGGATGAAAGCACCGATGGAGAAGAACAAAAGAACCAAGCACAAGGTGGGAGTGACGACGAGTATGGTGGACCTTTTTCATATGACCGAATTGGGGCCAATAGCCCGTTTGTTTCCTCTACCAACAGGGAAAGCATAGAACTGCAAGAAAGAGAGCTCCTTCACTCCCCATGGAACAGCTTCGCAAGCACGATGCTGCTTAATCAAACAACAAAAGAAGATGCCTCAGAGTCTCTGTTCTTCTTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006109 GO:0006110 GO:0006140 GO:0006355 GO:0006629 GO:0006638 GO:0006639 GO:0006641 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019220 GO:0019222 GO:0019432 GO:0030808 GO:0030811 GO:0031323 GO:0031326 GO:0031329 GO:0034285 GO:0042221 GO:0042325 GO:0043467 GO:0043470 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045017 GO:0046460 GO:0046463 GO:0046486 GO:0048518 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051193 GO:0051196 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900371 GO:1900542 GO:1901363 GO:1901576 GO:1901700 GO:1901957 GO:1901959 GO:1903506 GO:1903578 GO:2000112 GO:2001141 GO:2001169

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

269

Amino Acids

30.15

Weight (kDa)

5.18

Isoelectric Point (pI)

62.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	25 - 76	1.1e-11	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004539)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31880 FvH4_6g49200
malus_domestica	MD09G1047600.v1.1 MD09G1047800.v1.1 MD13G1078300.v1.1 MD17G1047900.v1.1
prunus_persica	Prupe.1G268800_v2.0.a1 Prupe.3G271200_v2.0.a1 Prupe.3G271400_v2.0.a1
pyrus_communis	pycom17g04250 pycom17g04270
rosa_chinensis	RchiOBHm_Chr2g0169071 RchiOBHm_Chr4g0440541
rosa_laevigata	RLG00000006169 RLG00000021831
rosa_multiflora	Rmu_co8472159.1_g000001 Rmu_sc0016635.1_g000002 Rmu_sc0037701.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082490 Rroxscaffold_3G00226840 Rroxscaffold_5G00381370
rosa_rugosa	Rorug02G0536600 Rorug04G0326600
rosa_samantha	Rh2AG608500 Rh2BG621300 Rh2CG590100 Rh2DG632000 Rh4CG405600 Rh4DG384600
rosa_wichuraiana	Rw2G050450 Rw4G032380 Rw4G032480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	1 cut(s)	195
AciI	CCGC	2 cut(s)	209, 492
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	494
AdeI	CACNNNGTG	1 cut(s)	605
AfaI	GTAC	3 cut(s)	80, 152, 221
AfiI	CCNNNNNNNGG	3 cut(s)	349, 373, 652
AgsI	TTSAA	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	443
AluBI	AGCT	5 cut(s)	191, 258, 305, 715, 738
AluI	AGCT	5 cut(s)	191, 258, 305, 715, 738
Alw21I	GWGCWC	2 cut(s)	260, 717
Alw26I	GTCTC	2 cut(s)	311, 795
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	4 cut(s)	30, 351, 499, 654
ApeKI	GCWGC	4 cut(s)	188, 302, 471, 754
Asp700I	GAANNNNTTC	2 cut(s)	534, 737
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	629, 654
AvaII	GGWCC	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	96
BanII	GRGCYC	2 cut(s)	260, 717
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	2 cut(s)	260, 717
BbvI	GCAGC	4 cut(s)	200, 314, 483, 741
BccI	CCATC	4 cut(s)	108, 108, 264, 569
BciT130I	CCWGG	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	311, 795
BisI	GCNGC	5 cut(s)	189, 210, 303, 472, 755
BlsI	GCNGC	5 cut(s)	190, 211, 304, 473, 756
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	2 cut(s)	629, 654
BmiI	GGNNCC	2 cut(s)	98, 655
BmrFI	CCNGG	1 cut(s)	445
BmsI	GCATC	2 cut(s)	741, 769
BpiI	GAAGAC	1 cut(s)	507
BpuEI	CTTGAG	3 cut(s)	274, 291, 451
BsaJI	CCNNGG	2 cut(s)	160, 728
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 373, 652
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	160, 728
BseGI	GGATG	3 cut(s)	363, 479, 568
BseLI	CCNNNNNNNGG	3 cut(s)	349, 373, 652
BseMI	GCAATG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	2 cut(s)	99, 494
BseXI	GCAGC	4 cut(s)	200, 314, 483, 741
Bsh1236I	CGCG	1 cut(s)	195
BshFI	GGCC	4 cut(s)	32, 353, 501, 656
BshNI	GGYRCC	1 cut(s)	96
BsiHKAI	GWGCWC	2 cut(s)	260, 717
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	349, 373, 652
BsmAI	GTCTC	2 cut(s)	311, 795
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	4 cut(s)	32, 353, 501, 656
Bsp1286I	GDGCHC	2 cut(s)	260, 717
Bsp143I	GATC	1 cut(s)	228
Bsp19I	CCATGG	1 cut(s)	728
BspACI	CCGC	2 cut(s)	209, 492
BspANI	GGCC	4 cut(s)	32, 353, 501, 656
BspCNI	CTCAG	1 cut(s)	797
BspFNI	CGCG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	98, 655
BspPI	GGATC	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	204
BsrI	ACTGG	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	160, 728
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	2 cut(s)	160, 728
Bst2UI	CCWGG	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	3 cut(s)	193, 355, 745
BstDEI	CTNAG	2 cut(s)	784, 807
BstDSI	CCRYGG	1 cut(s)	728
BstF5I	GGATG	3 cut(s)	363, 479, 568
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	2 cut(s)	311, 795
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 194, 744
BstNI	CCWGG	1 cut(s)	445
BstSCI	CCNGG	1 cut(s)	443
BstUI	CGCG	1 cut(s)	195
BstV1I	GCAGC	4 cut(s)	200, 314, 483, 741
BstV2I	GAAGAC	1 cut(s)	507
BstXI	CCANNNNNNTGG	1 cut(s)	107
BsuRI	GGCC	4 cut(s)	32, 353, 501, 656
BtgI	CCRYGG	1 cut(s)	728
BtsCI	GGATG	3 cut(s)	363, 479, 568
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
Cac8I	GCNNGC	3 cut(s)	193, 355, 745
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	2 cut(s)	629, 654
Csp6I	GTAC	3 cut(s)	79, 151, 220
CviAII	CATG	2 cut(s)	349, 729
CviQI	GTAC	3 cut(s)	79, 151, 220
DdeI	CTNAG	2 cut(s)	784, 807
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
DraIII	CACNNNGTG	1 cut(s)	605
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Ecl136II	GAGCTC	2 cut(s)	258, 715
Eco130I	CCWWGG	2 cut(s)	160, 728
Eco24I	GRGCYC	2 cut(s)	260, 717
Eco47I	GGWCC	1 cut(s)	629
Eco53kI	GAGCTC	2 cut(s)	258, 715
Eco57I	CTGAAG	1 cut(s)	494
EcoICRI	GAGCTC	2 cut(s)	258, 715
EcoRII	CCWGG	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	160, 728
EcoT38I	GRGCYC	2 cut(s)	260, 717
ErhI	CCWWGG	2 cut(s)	160, 728
FaeI	CATG	2 cut(s)	352, 732
FaiI	YATR	9 cut(s)	201, 350, 393, 521, 624, 640, 642, 695, 730
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	2 cut(s)	348, 728
FauNDI	CATATG	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	5 cut(s)	189, 210, 303, 472, 755
FokI	GGATG	3 cut(s)	350, 466, 575
FriOI	GRGCYC	2 cut(s)	260, 717
Fsp4HI	GCNGC	5 cut(s)	189, 210, 303, 472, 755
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	5 cut(s)	189, 210, 303, 472, 755
HaeIII	GGCC	4 cut(s)	32, 353, 501, 656
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	352, 732
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	4 cut(s)	126, 377, 464, 788
Hpy166II	GTNNAC	2 cut(s)	289, 629
Hpy188I	TCNGA	7 cut(s)	131, 143, 412, 527, 540, 559, 787
Hpy188III	TCNNGA	3 cut(s)	63, 308, 461
Hpy8I	GTNNAC	2 cut(s)	289, 629
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	2 cut(s)	518, 728
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	3 cut(s)	4, 326, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 194, 744
HpyF3I	CTNAG	2 cut(s)	784, 807
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	352, 732
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	447, 720
LpnPI	CCDG	7 cut(s)	14, 345, 367, 430, 457, 518, 670
Lsp1109I	GCAGC	4 cut(s)	200, 314, 483, 741
LweI	GCATC	2 cut(s)	741, 769
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	4 cut(s)	10, 238, 387, 611
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	8 cut(s)	32, 54, 144, 507, 553, 593, 788, 790
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	260, 717
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	4 cut(s)	213, 311, 550, 648
MluNI	TGGCCA	1 cut(s)	353
MlyI	GAGTC	2 cut(s)	458, 797
MmeI	TCCRAC	1 cut(s)	512
Mox20I	TGGCCA	1 cut(s)	353
MroXI	GAANNNNTTC	2 cut(s)	534, 737
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	3 cut(s)	38, 275, 759
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	445
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	171, 194, 744
NcoI	CCATGG	1 cut(s)	728
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	2 cut(s)	352, 732
NlaIV	GGNNCC	2 cut(s)	98, 655
NmuCI	GTSAC	3 cut(s)	238, 387, 611
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PdmI	GAANNNNTTC	2 cut(s)	534, 737
PfeI	GAWTC	2 cut(s)	126, 377
PfoI	TCCNGGA	1 cut(s)	443
PkrI	GCNGC	5 cut(s)	190, 211, 304, 473, 756
PleI	GAGTC	2 cut(s)	458, 796
PpsI	GAGTC	2 cut(s)	458, 796
Psp124BI	GAGCTC	2 cut(s)	260, 717
Psp6I	CCWGG	1 cut(s)	443
PspGI	CCWGG	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	98, 655
PspPI	GGNCC	2 cut(s)	629, 654
PsrI	GAACNNNNNNTAC	2 cut(s)	536, 568
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	80, 152, 221
RsaNI	GTAC	3 cut(s)	79, 151, 220
RseI	CAYNNNNRTG	1 cut(s)	105
SacI	GAGCTC	2 cut(s)	260, 717
SaqAI	TTAA	3 cut(s)	38, 275, 759
SatI	GCNGC	5 cut(s)	189, 210, 303, 472, 755
Sau3AI	GATC	1 cut(s)	228
Sau96I	GGNCC	2 cut(s)	629, 654
SchI	GAGTC	2 cut(s)	458, 797
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	2 cut(s)	260, 717
SfaNI	GCATC	2 cut(s)	741, 769
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	105
SmlI	CTYRAG	3 cut(s)	253, 306, 466
SmoI	CTYRAG	3 cut(s)	253, 306, 466
Sse9I	AATT	4 cut(s)	213, 311, 550, 648
SsiI	CCGC	2 cut(s)	209, 492
SstI	GAGCTC	2 cut(s)	260, 717
StyD4I	CCNGG	1 cut(s)	443
StyI	CCWWGG	2 cut(s)	160, 728
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	3 cut(s)	249, 462, 548
TaqII	GACCGA	1 cut(s)	660
TasI	AATT	4 cut(s)	213, 311, 550, 648
TatI	WGTACW	2 cut(s)	78, 219
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	126, 377
Tru1I	TTAA	3 cut(s)	38, 275, 759
Tru9I	TTAA	3 cut(s)	38, 275, 759
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	3 cut(s)	238, 387, 611
TseI	GCWGC	4 cut(s)	188, 302, 471, 754
Tsp45I	GTSAC	3 cut(s)	238, 387, 611
TspDTI	ATGAA	3 cut(s)	337, 579, 627
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	2 cut(s)	534, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.