pycom17g04270

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
2917358 .. 2919791
2434 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g04270.1

Sequence Viewer

Length: 1281 bp
ATGACTTTTTTCCATTATTATATATACGCTCCAACATCCTTCCTTACAGCTCAAGCAACCACATCAACAACCACCACCGAATTTGACAACGACGAGCGGAGCAGTTTATCTCGAGAGATGGAGTTCATGATGGTGAGGAATGAAGAGAACGCGGGTAGGCGCCGCCTGAGGACAGCGGAACCTGAGGCTCAGGCGGCCCGGTGCGTCAAGAGAAGGAGACGAGACCCACCTGCAGTTGGTGGCAATAGCCAAACCGAGCAGCAGTTGGCACAAAAGCCAGCTGATCAAGCTTCTGGTGCCACCACTGTGAAGAGAAGCTCGAGATTTCGCGGTGTCAGCAGGCATCGGTGGACTGGTCGATTTGAAGCTCACTTGTGGGACAAGCTATCGTGGAATTCAACACAGAAGAAGAAAGGGAAACAAGTTTACCTTGGAGCTTATGATGAAGAAGAACCTGCTGCAAGAGCATATGATCTAGCCGCAGTCAAGTACTGGGGGGCATCGACTTTCACCAACTTTCCGGTACAAATTTATATAATATCTGACTATGACAATGAAATCGAGATCATGCAATCTATGACAAAAGAAGAGTATTTGGCCTCGTTAAGAAGAAAGAGCAGTGGATTTTCAAGAGGTGTATCAAAGTACCGAGGAGTAGCAAGGCACCATCACAACGGTAGATGGGAAGCGAGAATAGGAAGAGTTTTCGGAAATAAGTACCTCTACCTTGGCACTTACAGTACGCAAGAAGAAGCAGCTCGCGCCTACGACATTGCAGCAATTGAGTACAGAGGGATCAATGCTGTGACCAACTTCGACTTGAGTTCTTACATAAGATGGTTGAAGCCAAGAACAGACGACACTATATCTACTGAACAAGTACCGGAGGCAGTCACAGAGCCCAAAAATACACCATTCGCGGCCAGCAGCTACATCACAACCGAGCAAGCTCCCTTCTCGCTCAAAAATCCTTTTGCCTCTGATTACGTACACTCTCCTCGAAAGCAAGAAGTCATCCGCAGCAGCAAATCATCTTCTCCCACCGCGCTTGGCCTACTCCTCCAGTCTTCAGTATTCAGAGAACTGGTTCAGAAGAACTCAAGTTTCTCAGATGATGACAGCTCTGACGGCGAAGAACCAAAGAACCAACTGCAGGCTGGTAGCAATGATGAGTTCGGTGGAATAATCTATGACGGAGTTGGTGGCAGCCCTTTTGTTTGCTCTTCCAACACTGATGAAAACTTTACATGGAATAGCTTTACAAGCACAATTTTCGCTTAG

Protein Analysis

427

Amino Acids

48.16

Weight (kDa)

8.29

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 107 - 166 2e-11 AP2 domain
AP2 PF00847 214 - 265 2.3e-11 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 238
Acc36I ACCTGC 2 cut(s) 238, 463
AccB1I GGYRCC 3 cut(s) 159, 296, 663
AccBSI CCGCTC 1 cut(s) 97
AccII CGCG 5 cut(s) 152, 330, 762, 920, 1046
AclWI GGATC 1 cut(s) 803
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 3 cut(s) 80, 394, 528
AcuI CTGAAG 1 cut(s) 1053
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 8 cut(s) 491, 525, 647, 719, 742, 788, 882, 990
AfiI CCNNNNNNNGG 2 cut(s) 236, 1153
AgsI TTSAA 4 cut(s) 365, 399, 630, 844
AleI CACNNNNGTG 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 211, 216
AlwI GGATC 1 cut(s) 803
Ama87I CYCGRG 2 cut(s) 111, 319
AoxI GGCC 4 cut(s) 195, 597, 921, 1051
ApeKI GCWGC 8 cut(s) 259, 458, 755, 776, 927, 1020, 1023, 1206
ApoI RAATTY 3 cut(s) 80, 394, 528
Asp700I GAANNNNTTC 1 cut(s) 1086
AspLEI GCGC 3 cut(s) 162, 764, 1048
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 145, 502
AvaI CYCGRG 2 cut(s) 111, 319
AxyI CCTNAGG 2 cut(s) 167, 183
BanI GGYRCC 3 cut(s) 159, 296, 663
BanII GRGCYC 1 cut(s) 903
BbsI GAAGAC 1 cut(s) 1059
BbvI GCAGC 8 cut(s) 271, 445, 767, 788, 939, 1032, 1035, 1218
BccI CCATC 5 cut(s) 112, 124, 675, 675, 831
BceAI ACGGC 1 cut(s) 1144
BcgI CGANNNNNNTGC 1 cut(s) 1255
BclI TGATCA 1 cut(s) 283
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 211, 216
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 2 cut(s) 231, 1151
BfoI RGCGCY 1 cut(s) 163
BfuAI ACCTGC 2 cut(s) 238, 463
BmcAI AGTACT 1 cut(s) 491
Bme1390I CCNGG 1 cut(s) 199
BmeT110I CYCGRG 2 cut(s) 111, 319
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 4 cut(s) 161, 180, 298, 665
BmrFI CCNGG 1 cut(s) 199
BmrI ACTGGG 1 cut(s) 502
BmsI GCATC 2 cut(s) 352, 509
BmuI ACTGGG 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 1059
BpmI CTGGAG 1 cut(s) 1046
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 3 cut(s) 36, 841, 1084
BpuMI CCSGG 1 cut(s) 199
BsaAI YACGTR 1 cut(s) 988
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 430, 649, 727
BsaWI WCCGGW 2 cut(s) 520, 883
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 1153
Bse1I ACTGG 4 cut(s) 358, 497, 1063, 1089
Bse21I CCTNAGG 2 cut(s) 167, 183
Bse3DI GCAATG 2 cut(s) 771, 1171
BseDI CCNNGG 3 cut(s) 430, 649, 727
BseGI GGATG 2 cut(s) 35, 1014
BseLI CCNNNNNNNGG 2 cut(s) 236, 1153
BseMI GCAATG 2 cut(s) 771, 1171
BseMII CTCAG 4 cut(s) 158, 174, 203, 1122
BseNI ACTGG 4 cut(s) 358, 497, 1063, 1089
BseRI GAGGAG 3 cut(s) 666, 987, 1049
BseXI GCAGC 8 cut(s) 271, 445, 767, 788, 939, 1032, 1035, 1218
Bsh1236I CGCG 5 cut(s) 152, 330, 762, 920, 1046
BshFI GGCC 4 cut(s) 197, 599, 923, 1053
BshNI GGYRCC 3 cut(s) 159, 296, 663
BsiHKCI CYCGRG 2 cut(s) 111, 319
BsiSI CCGG 3 cut(s) 199, 521, 884
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 236, 1153
BsmAI GTCTC 2 cut(s) 211, 216
BsmBI CGTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 4 cut(s) 197, 599, 923, 1053
Bso31I GGTCTC 1 cut(s) 216
BsoBI CYCGRG 2 cut(s) 111, 319
Bsp1286I GDGCHC 1 cut(s) 903
Bsp143I GATC 4 cut(s) 283, 472, 564, 795
BspANI GGCC 4 cut(s) 197, 599, 923, 1053
BspCNI CTCAG 4 cut(s) 159, 175, 202, 1121
BspFNI CGCG 5 cut(s) 152, 330, 762, 920, 1046
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 161, 180, 298, 665
BspMAI CTGCAG 2 cut(s) 235, 1155
BspMI ACCTGC 2 cut(s) 238, 463
BspPI GGATC 1 cut(s) 803
BspQI GCTCTTC 1 cut(s) 1228
BspT107I GGYRCC 3 cut(s) 159, 296, 663
BspTNI GGTCTC 1 cut(s) 216
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 2 cut(s) 771, 1171
BsrI ACTGG 4 cut(s) 358, 497, 1063, 1089
BssECI CCNNGG 3 cut(s) 430, 649, 727
BssMI GATC 4 cut(s) 283, 472, 564, 795
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 430, 727
Bst4CI ACNGT 3 cut(s) 307, 677, 740
Bst6I CTCTTC 5 cut(s) 138, 305, 582, 694, 1228
BstACI GRCGYC 1 cut(s) 160
BstBAI YACGTR 1 cut(s) 988
BstC8I GCNNGC 6 cut(s) 279, 341, 760, 925, 948, 1155
BstDEI CTNAG 5 cut(s) 167, 183, 189, 1108, 1278
BstF5I GGATG 2 cut(s) 35, 1014
BstFNI CGCG 5 cut(s) 152, 330, 762, 920, 1046
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 3 cut(s) 162, 764, 1048
BstKTI GATC 4 cut(s) 286, 475, 567, 798
BstMAI GTCTC 2 cut(s) 211, 216
BstMBI GATC 4 cut(s) 283, 472, 564, 795
BstMWI GCNNNNNNNGC 8 cut(s) 194, 287, 296, 336, 464, 761, 1128, 1263
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 2 cut(s) 231, 1151
BstSNI TACGTA 1 cut(s) 988
BstUI CGCG 5 cut(s) 152, 330, 762, 920, 1046
BstV1I GCAGC 8 cut(s) 271, 445, 767, 788, 939, 1032, 1035, 1218
BstV2I GAAGAC 1 cut(s) 1059
Bsu36I CCTNAGG 2 cut(s) 167, 183
BsuRI GGCC 4 cut(s) 197, 599, 923, 1053
BtsCI GGATG 2 cut(s) 35, 1014
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 3 cut(s) 303, 625, 1230
BveI ACCTGC 2 cut(s) 238, 463
Cac8I GCNNGC 6 cut(s) 279, 341, 760, 925, 948, 1155
CciI TCATGA 1 cut(s) 126
CfoI GCGC 3 cut(s) 162, 764, 1048
Cfr13I GGNCC 1 cut(s) 196
CseI GACGC 1 cut(s) 193
Csp6I GTAC 8 cut(s) 490, 524, 646, 718, 741, 787, 881, 989
CspCI CAANNNNNGTGG 4 cut(s) 64, 99, 1030, 1065
CviAII CATG 3 cut(s) 127, 568, 1248
CviQI GTAC 8 cut(s) 490, 524, 646, 718, 741, 787, 881, 989
DdeI CTNAG 5 cut(s) 167, 183, 189, 1108, 1278
DinI GGCGCC 1 cut(s) 161
DpnI GATC 4 cut(s) 285, 474, 566, 797
DpnII GATC 4 cut(s) 283, 472, 564, 795
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 5 cut(s) 138, 305, 582, 694, 1228
EarI CTCTTC 5 cut(s) 138, 305, 582, 694, 1228
Eco105I TACGTA 1 cut(s) 988
Eco130I CCWWGG 2 cut(s) 430, 727
Eco24I GRGCYC 1 cut(s) 903
Eco31I GGTCTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 1053
Eco81I CCTNAGG 2 cut(s) 167, 183
Eco88I CYCGRG 2 cut(s) 111, 319
EcoRI GAATTC 1 cut(s) 394
EcoT14I CCWWGG 2 cut(s) 430, 727
EcoT38I GRGCYC 1 cut(s) 903
EgeI GGCGCC 1 cut(s) 161
EheI GGCGCC 1 cut(s) 161
ErhI CCWWGG 2 cut(s) 430, 727
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 3 cut(s) 130, 571, 1251
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 392
FatI CATG 3 cut(s) 126, 567, 1247
FauI CCCGC 1 cut(s) 145
FauNDI CATATG 1 cut(s) 469
FbaI TGATCA 1 cut(s) 283
FokI GGATG 2 cut(s) 22, 1001
FriOI GRGCYC 1 cut(s) 903
FspBI CTAG 1 cut(s) 476
GlaI GCGC 3 cut(s) 161, 763, 1047
GsuI CTGGAG 1 cut(s) 1046
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 4 cut(s) 197, 599, 923, 1053
HapII CCGG 3 cut(s) 199, 521, 884
HgaI GACGC 1 cut(s) 193
HhaI GCGC 3 cut(s) 162, 764, 1048
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 3 cut(s) 130, 571, 1251
Hin6I GCGC 3 cut(s) 160, 762, 1046
HinP1I GCGC 3 cut(s) 160, 762, 1046
HindIII AAGCTT 1 cut(s) 288
HpaII CCGG 3 cut(s) 199, 521, 884
HphI GGTGA 2 cut(s) 145, 502
Hpy166II GTNNAC 3 cut(s) 351, 427, 991
Hpy188I TCNGA 7 cut(s) 544, 710, 982, 1079, 1092, 1111, 1126
Hpy188III TCNNGA 7 cut(s) 111, 113, 127, 208, 321, 562, 630
Hpy8I GTNNAC 3 cut(s) 351, 427, 991
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 3 cut(s) 49, 207, 964
HpyCH4III ACNGT 3 cut(s) 307, 677, 740
HpyCH4IV ACGT 1 cut(s) 987
HpyCH4V TGCA 5 cut(s) 233, 461, 571, 776, 1153
HpyF10VI GCNNNNNNNGC 8 cut(s) 194, 287, 296, 336, 464, 761, 1128, 1263
HpyF3I CTNAG 5 cut(s) 167, 183, 189, 1108, 1278
HpySE526I ACGT 1 cut(s) 987
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 3 cut(s) 130, 571, 1251
HspAI GCGC 3 cut(s) 160, 762, 1046
KasI GGCGCC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 4 cut(s) 283, 472, 564, 795
LguI GCTCTTC 1 cut(s) 1228
LmnI GCTCC 4 cut(s) 34, 99, 434, 955
Lsp1109I GCAGC 8 cut(s) 271, 445, 767, 788, 939, 1032, 1035, 1218
LweI GCATC 2 cut(s) 352, 509
MaeI CTAG 1 cut(s) 476
MaeII ACGT 1 cut(s) 987
MaeIII GTNAC 2 cut(s) 805, 892
MalI GATC 4 cut(s) 285, 474, 566, 797
MbiI CCGCTC 1 cut(s) 97
MboI GATC 4 cut(s) 283, 472, 564, 795
MfeI CAATTG 1 cut(s) 780
MhlI GDGCHC 1 cut(s) 903
MluCI AATT 5 cut(s) 80, 394, 528, 780, 1269
Mly113I GGCGCC 1 cut(s) 160
MmeI TCCRAC 2 cut(s) 56, 1251
MroXI GAANNNNTTC 1 cut(s) 1086
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 2 cut(s) 131, 305
MspA1I CMGCKG 2 cut(s) 176, 281
MspI CCGG 3 cut(s) 199, 521, 884
MspR9I CCNGG 1 cut(s) 199
MunI CAATTG 1 cut(s) 780
MvnI CGCG 5 cut(s) 152, 330, 762, 920, 1046
MwoI GCNNNNNNNGC 8 cut(s) 194, 287, 296, 336, 464, 761, 1128, 1263
NarI GGCGCC 1 cut(s) 160
NciI CCSGG 1 cut(s) 199
NdeI CATATG 1 cut(s) 469
NdeII GATC 4 cut(s) 283, 472, 564, 795
NlaIII CATG 3 cut(s) 130, 571, 1251
NlaIV GGNNCC 4 cut(s) 161, 180, 298, 665
NmuCI GTSAC 2 cut(s) 805, 892
OliI CACNNNNGTG 1 cut(s) 305
PaeR7I CTCGAG 2 cut(s) 111, 319
PagI TCATGA 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 238
PciSI GCTCTTC 1 cut(s) 1228
PdmI GAANNNNTTC 1 cut(s) 1086
PluTI GGCGCC 1 cut(s) 163
Ppu21I YACGTR 1 cut(s) 988
PspN4I GGNNCC 4 cut(s) 161, 180, 298, 665
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 2 cut(s) 235, 1155
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 8 cut(s) 491, 525, 647, 719, 742, 788, 882, 990
RsaNI GTAC 8 cut(s) 490, 524, 646, 718, 741, 787, 881, 989
RseI CAYNNNNRTG 2 cut(s) 131, 305
SapI GCTCTTC 1 cut(s) 1228
SaqAI TTAA 1 cut(s) 605
Sau3AI GATC 4 cut(s) 283, 472, 564, 795
Sau96I GGNCC 1 cut(s) 196
ScaI AGTACT 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 903
SfaNI GCATC 2 cut(s) 352, 509
SfcI CTRYAG 2 cut(s) 231, 1151
SfoI GGCGCC 1 cut(s) 161
Sfr274I CTCGAG 2 cut(s) 111, 319
SlaI CTCGAG 2 cut(s) 111, 319
SmiMI CAYNNNNRTG 2 cut(s) 131, 305
SmlI CTYRAG 5 cut(s) 51, 111, 319, 820, 1099
SmoI CTYRAG 5 cut(s) 51, 111, 319, 820, 1099
SnaBI TACGTA 1 cut(s) 988
Sse9I AATT 5 cut(s) 80, 394, 528, 780, 1269
SspDI GGCGCC 1 cut(s) 159
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 2 cut(s) 430, 727
TaaI ACNGT 3 cut(s) 307, 677, 740
TaiI ACGT 1 cut(s) 990
TaqI TCGA 7 cut(s) 112, 320, 358, 503, 561, 816, 1000
TasI AATT 5 cut(s) 80, 394, 528, 780, 1269
TatI WGTACW 2 cut(s) 489, 786
TauI GCSGC 4 cut(s) 165, 197, 482, 923
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 3 cut(s) 310, 625, 1237
TseFI GTSAC 2 cut(s) 805, 892
TseI GCWGC 8 cut(s) 259, 458, 755, 776, 927, 1020, 1023, 1206
Tsp45I GTSAC 2 cut(s) 805, 892
TspDTI ATGAA 5 cut(s) 115, 156, 459, 570, 1251
TspGWI ACGGA 1 cut(s) 1209
TspRI CASTG 3 cut(s) 310, 625, 1237
XapI RAATTY 3 cut(s) 80, 394, 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 1154
XhoI CTCGAG 2 cut(s) 111, 319
XmnI GAANNNNTTC 1 cut(s) 1086
XspI CTAG 1 cut(s) 476
ZrmI AGTACT 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.