MD09G1047600.v1.1

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
3119208 .. 3121168
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1047600.v1.1.491

Sequence Viewer

Length: 1212 bp
ATGATGGTGAAGAATGAAGAAAACCCTGGGAGGCGCCGCCTGAGTGCAGCAGACCGCGAGGTTCAGGCAGCCCGGTGTGTCAAGAGAAGGAGAAGAGACCCACCTGCAGTCGCGGTTAGTTCTGACAACAACCAGAGTGAGCTACAGTTGCCTCAAAAGCCAGCGGATCAAACTCCAGCTACCACCATGAAGAGAAGCTCGAGATTTCGTGGTGTCAGCAGGCATCGATGGACTGGTCGATTCGAAGCTCACTTGTGGGATAAGCTCTCTTGGAATGTAACACAGAAGAAGAAAGGGAAACAAGTTTACCTTGGAGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGATCTAGCTGCCCTTAAGTATTGGGGAGCATCGACCTTCACCAACTTCCCAATATCGGACTATGAGAAAGAAATCGAGATCATGCAATCTGTGACGAAAGAAGAGTATTTGGCCTCGTTAAGAAGAAAAAGCAGTGGATTTTCAAGAGGTGTATCAAAGTACAGAGGAGTTGCAAGGCACCATCACAATGGCAGATGGGAAGCAAGAATCGGAAGAGTTTTCGGAAACAAGTACCTCTACCTTGGCACTTACGGTACGCAAGAGGAAGCAGCTCGGGCCTACGACATTGCGGCGATTGAGTACAGAGGAATCAATGCCGTCACCAATTTTGACTTAAGTTCTTACATAAGATGGTTGAAGCCAAAAGCAGGCGACACTATAGCCACTCAAGAACTAGAGGCAGTCACAGGGCCTCAGAACATGCCATTCATGGGCAACGGCTACATCCCTGCAGACGAAACATCCTTCTCACACACCAATCCTTTTGCCTCTGACTACCTGAACTCTCCGCAGAACCAAGAAGTCACCCGAAGCAGCACCAATCTTAACACCGGCAGCAAGTCATCCTCTCCCACCGCACTTGGCCTTCTTCTTCAATCTTCAATTTTCCGAGAGCTGGTTCAGAAGAACTCGAATCTCTCCGAGGATGACAGCACTGACGACGAAGAACCAAAGAACCAACCGCAGGCTGGCAGCGATGATGAGTATGGTGGGATCTTCTATGCTGGAACCGGCGAAAACCCTTTTGTTTGCTCCTCCGGCACTGACGGCAACAATCCATGGAACAACATCGCAAGCACTATTTTGCTCAATCAACCCACAAAGGCAAATGCTTCAGACTCTATATTTTTCTTTTCTTAG

Protein Analysis

404

Amino Acids

45.09

Weight (kDa)

8.3

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 67 - 126 2.6e-12 AP2 domain
AP2 PF00847 169 - 220 1.5e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 2 cut(s) 33, 528
AccII CGCG 2 cut(s) 57, 113
AciI CCGC 8 cut(s) 37, 55, 113, 164, 641, 860, 927, 1034
AclWI GGATC 2 cut(s) 174, 1073
AcuI CTGAAG 1 cut(s) 1170
AcyI GRCGYC 1 cut(s) 34
AfaI GTAC 4 cut(s) 512, 584, 607, 653
AfiI CCNNNNNNNGG 6 cut(s) 406, 719, 782, 967, 1036, 1040
AflII CTTAAG 2 cut(s) 365, 685
AgsI TTSAA 4 cut(s) 495, 709, 947, 954
AjnI CCWGG 1 cut(s) 25
AluBI AGCT 9 cut(s) 142, 179, 198, 248, 265, 317, 359, 623, 967
AluI AGCT 9 cut(s) 142, 179, 198, 248, 265, 317, 359, 623, 967
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 2 cut(s) 174, 1073
Ama87I CYCGRG 2 cut(s) 199, 624
AoxI GGCC 4 cut(s) 462, 627, 761, 934
ApeKI GCWGC 8 cut(s) 47, 68, 338, 359, 620, 885, 906, 1044
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 2 cut(s) 627, 761
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 4 cut(s) 19, 382, 664, 868
AsuII TTCGAA 1 cut(s) 243
AvaI CYCGRG 2 cut(s) 199, 624
BanI GGYRCC 2 cut(s) 33, 528
BbvI GCAGC 8 cut(s) 59, 80, 325, 346, 632, 897, 918, 1056
BccI CCATC 4 cut(s) 222, 540, 540, 696
BceAI ACGGC 3 cut(s) 653, 805, 1135
BciT130I CCWGG 1 cut(s) 27
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 2 cut(s) 356, 746
BfmI CTRYAG 4 cut(s) 105, 143, 729, 801
BfoI RGCGCY 1 cut(s) 37
BfrI CTTAAG 2 cut(s) 365, 685
BfuAI ACCTGC 1 cut(s) 112
Bme1390I CCNGG 2 cut(s) 27, 73
BmeT110I CYCGRG 2 cut(s) 199, 624
BmgT120I GGNCC 2 cut(s) 627, 761
BmiI GGNNCC 3 cut(s) 35, 530, 1081
BmrFI CCNGG 2 cut(s) 27, 73
BmsI GCATC 2 cut(s) 232, 389
BpmI CTGGAG 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 723
BpuMI CCSGG 1 cut(s) 73
Bsa29I ATCGAT 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 90
BsaJI CCNNGG 6 cut(s) 25, 26, 310, 592, 993, 1130
Bsc4I CCNNNNNNNGG 6 cut(s) 406, 719, 782, 967, 1036, 1040
Bse118I RCCGGY 2 cut(s) 902, 1082
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 226
BseDI CCNNGG 6 cut(s) 25, 26, 310, 592, 993, 1130
BseGI GGATG 4 cut(s) 795, 812, 914, 1003
BseLI CCNNNNNNNGG 6 cut(s) 406, 719, 782, 967, 1036, 1040
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 2 cut(s) 32, 779
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 2 cut(s) 531, 1096
BseXI GCAGC 8 cut(s) 59, 80, 325, 346, 632, 897, 918, 1056
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 2 cut(s) 57, 113
BshFI GGCC 4 cut(s) 464, 629, 763, 936
BshNI GGYRCC 2 cut(s) 33, 528
BshVI ATCGAT 1 cut(s) 226
BsiHKCI CYCGRG 2 cut(s) 199, 624
BsiSI CCGG 4 cut(s) 73, 903, 1083, 1110
BslI CCNNNNNNNGG 6 cut(s) 406, 719, 782, 967, 1036, 1040
BsmAI GTCTC 1 cut(s) 90
BsnI GGCC 4 cut(s) 464, 629, 763, 936
Bso31I GGTCTC 1 cut(s) 90
BsoBI CYCGRG 2 cut(s) 199, 624
Bsp119I TTCGAA 1 cut(s) 243
Bsp143I GATC 4 cut(s) 166, 352, 429, 1065
Bsp19I CCATGG 1 cut(s) 1130
BspACI CCGC 8 cut(s) 37, 55, 113, 164, 641, 860, 927, 1034
BspANI GGCC 4 cut(s) 464, 629, 763, 936
BspCNI CTCAG 2 cut(s) 33, 778
BspDI ATCGAT 1 cut(s) 226
BspFNI CGCG 2 cut(s) 57, 113
BspLI GGNNCC 3 cut(s) 35, 530, 1081
BspMAI CTGCAG 2 cut(s) 109, 805
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 2 cut(s) 174, 1073
BspT104I TTCGAA 1 cut(s) 243
BspT107I GGYRCC 2 cut(s) 33, 528
BspTI CTTAAG 2 cut(s) 365, 685
BspTNI GGTCTC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 2 cut(s) 902, 1082
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 2 cut(s) 902, 1082
BssECI CCNNGG 6 cut(s) 25, 26, 310, 592, 993, 1130
BssMI GATC 4 cut(s) 166, 352, 429, 1065
BssNI GRCGYC 1 cut(s) 34
BssT1I CCWWGG 3 cut(s) 310, 592, 1130
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 2 cut(s) 147, 605
Bst6I CTCTTC 4 cut(s) 88, 185, 447, 559
BstACI GRCGYC 1 cut(s) 34
BstAFI CTTAAG 2 cut(s) 365, 685
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 6 cut(s) 162, 221, 721, 1038, 1042, 1147
BstDEI CTNAG 3 cut(s) 41, 765, 1209
BstDSI CCRYGG 1 cut(s) 1130
BstF5I GGATG 4 cut(s) 795, 812, 914, 1003
BstFNI CGCG 2 cut(s) 57, 113
BstH2I RGCGCY 1 cut(s) 37
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 4 cut(s) 169, 355, 432, 1068
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 4 cut(s) 166, 352, 429, 1065
BstMWI GCNNNNNNNGC 6 cut(s) 148, 157, 344, 626, 1110, 1119
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 2 cut(s) 25, 71
BstSFI CTRYAG 4 cut(s) 105, 143, 729, 801
BstUI CGCG 2 cut(s) 57, 113
BstV1I GCAGC 8 cut(s) 59, 80, 325, 346, 632, 897, 918, 1056
BstX2I RGATCY 1 cut(s) 1065
BstXI CCANNNNNNTGG 1 cut(s) 539
BstYI RGATCY 1 cut(s) 1065
Bsu15I ATCGAT 1 cut(s) 226
BsuRI GGCC 4 cut(s) 464, 629, 763, 936
BsuTUI ATCGAT 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 1130
BtgZI GCGATG 2 cut(s) 1062, 1126
BtsCI GGATG 4 cut(s) 795, 812, 914, 1003
BtsI GCAGTG 1 cut(s) 490
BtsIMutI CAGTG 3 cut(s) 490, 1005, 1113
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 6 cut(s) 162, 221, 721, 1038, 1042, 1147
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 2 cut(s) 902, 1082
Cfr13I GGNCC 2 cut(s) 627, 761
ClaI ATCGAT 1 cut(s) 226
Csp6I GTAC 4 cut(s) 511, 583, 606, 652
CspCI CAANNNNNGTGG 2 cut(s) 913, 948
CviAII CATG 5 cut(s) 187, 433, 772, 781, 1131
CviQI GTAC 4 cut(s) 511, 583, 606, 652
DdeI CTNAG 3 cut(s) 41, 765, 1209
DinI GGCGCC 1 cut(s) 35
DpnI GATC 4 cut(s) 168, 354, 431, 1067
DpnII GATC 4 cut(s) 166, 352, 429, 1065
Eam1104I CTCTTC 4 cut(s) 88, 185, 447, 559
EarI CTCTTC 4 cut(s) 88, 185, 447, 559
Eco130I CCWWGG 3 cut(s) 310, 592, 1130
Eco31I GGTCTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 1170
Eco88I CYCGRG 2 cut(s) 199, 624
EcoO109I RGGNCCY 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 25
EcoT14I CCWWGG 3 cut(s) 310, 592, 1130
EgeI GGCGCC 1 cut(s) 35
EheI GGCGCC 1 cut(s) 35
ErhI CCWWGG 3 cut(s) 310, 592, 1130
FaeI CATG 5 cut(s) 190, 436, 775, 784, 1134
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 5 cut(s) 186, 432, 771, 780, 1130
FauNDI CATATG 1 cut(s) 349
FokI GGATG 4 cut(s) 782, 799, 901, 1010
FspBI CTAG 2 cut(s) 356, 746
GlaI GCGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 37
HaeIII GGCC 4 cut(s) 464, 629, 763, 936
HapII CCGG 4 cut(s) 73, 903, 1083, 1110
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 34
Hin1II CATG 5 cut(s) 190, 436, 775, 784, 1134
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 6 cut(s) 240, 332, 558, 660, 985, 1190
HpaII CCGG 4 cut(s) 73, 903, 1083, 1110
HphI GGTGA 4 cut(s) 19, 382, 664, 868
Hpy166II GTNNAC 1 cut(s) 307
Hpy188III TCNNGA 5 cut(s) 82, 201, 427, 495, 740
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 1 cut(s) 1016
HpyAV CCTTC 4 cut(s) 81, 397, 826, 947
HpyCH4III ACNGT 2 cut(s) 147, 605
HpyCH4V TGCA 6 cut(s) 47, 107, 341, 436, 524, 803
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 157, 344, 626, 1110, 1119
HpyF3I CTNAG 3 cut(s) 41, 765, 1209
Hsp92I GRCGYC 1 cut(s) 34
Hsp92II CATG 5 cut(s) 190, 436, 775, 784, 1134
HspAI GCGC 1 cut(s) 34
KasI GGCGCC 1 cut(s) 33
Kzo9I GATC 4 cut(s) 166, 352, 429, 1065
LmnI GCTCC 3 cut(s) 314, 377, 1109
Lsp1109I GCAGC 8 cut(s) 59, 80, 325, 346, 632, 897, 918, 1056
LweI GCATC 2 cut(s) 232, 389
MaeI CTAG 2 cut(s) 356, 746
MaeIII GTNAC 5 cut(s) 277, 442, 670, 754, 874
MalI GATC 4 cut(s) 168, 354, 431, 1067
MboI GATC 4 cut(s) 166, 352, 429, 1065
MflI RGATCY 1 cut(s) 1065
MluCI AATT 2 cut(s) 676, 954
Mly113I GGCGCC 1 cut(s) 34
MlyI GAGTC 1 cut(s) 1184
MseI TTAA 4 cut(s) 366, 470, 686, 897
MslI CAYNNNNRTG 1 cut(s) 537
MspA1I CMGCKG 1 cut(s) 164
MspCI CTTAAG 2 cut(s) 365, 685
MspI CCGG 4 cut(s) 73, 903, 1083, 1110
MspR9I CCNGG 2 cut(s) 27, 73
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 2 cut(s) 57, 113
MwoI GCNNNNNNNGC 6 cut(s) 148, 157, 344, 626, 1110, 1119
NarI GGCGCC 1 cut(s) 34
NciI CCSGG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 1130
NdeI CATATG 1 cut(s) 349
NdeII GATC 4 cut(s) 166, 352, 429, 1065
NlaIII CATG 5 cut(s) 190, 436, 775, 784, 1134
NlaIV GGNNCC 3 cut(s) 35, 530, 1081
NmuCI GTSAC 4 cut(s) 442, 670, 754, 874
NspI RCATGY 1 cut(s) 775
NspV TTCGAA 1 cut(s) 243
PaeR7I CTCGAG 1 cut(s) 199
PaqCI CACCTGC 1 cut(s) 112
PasI CCCWGGG 1 cut(s) 26
PfeI GAWTC 5 cut(s) 240, 332, 558, 660, 985
PleI GAGTC 1 cut(s) 1184
PluTI GGCGCC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 1184
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 3 cut(s) 35, 530, 1081
PspPI GGNCC 2 cut(s) 627, 761
PstI CTGCAG 2 cut(s) 109, 805
PsuI RGATCY 1 cut(s) 1065
RsaI GTAC 4 cut(s) 512, 584, 607, 653
RsaNI GTAC 4 cut(s) 511, 583, 606, 652
RseI CAYNNNNRTG 1 cut(s) 537
SaqAI TTAA 4 cut(s) 366, 470, 686, 897
Sau3AI GATC 4 cut(s) 166, 352, 429, 1065
Sau96I GGNCC 2 cut(s) 627, 761
SchI GAGTC 1 cut(s) 1184
ScrFI CCNGG 2 cut(s) 27, 73
SfaNI GCATC 2 cut(s) 232, 389
SfcI CTRYAG 4 cut(s) 105, 143, 729, 801
SfoI GGCGCC 1 cut(s) 35
Sfr274I CTCGAG 1 cut(s) 199
SfuI TTCGAA 1 cut(s) 243
SlaI CTCGAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 4 cut(s) 199, 365, 685, 738
SmoI CTYRAG 4 cut(s) 199, 365, 685, 738
Sse9I AATT 2 cut(s) 676, 954
SsiI CCGC 8 cut(s) 37, 55, 113, 164, 641, 860, 927, 1034
SspDI GGCGCC 1 cut(s) 33
SspMI CTAG 2 cut(s) 356, 746
StyD4I CCNGG 2 cut(s) 25, 71
StyI CCWWGG 3 cut(s) 310, 592, 1130
TaaI ACNGT 2 cut(s) 147, 605
TaqI TCGA 7 cut(s) 200, 226, 238, 243, 383, 426, 983
TasI AATT 2 cut(s) 676, 954
TatI WGTACW 2 cut(s) 510, 651
TauI GCSGC 2 cut(s) 39, 644
TfiI GAWTC 5 cut(s) 240, 332, 558, 660, 985
Tru1I TTAA 4 cut(s) 366, 470, 686, 897
Tru9I TTAA 4 cut(s) 366, 470, 686, 897
TscAI CASTG 3 cut(s) 490, 1012, 1120
TseFI GTSAC 4 cut(s) 442, 670, 754, 874
TseI GCWGC 8 cut(s) 47, 68, 338, 359, 620, 885, 906, 1044
Tsp45I GTSAC 4 cut(s) 442, 670, 754, 874
TspDTI ATGAA 4 cut(s) 30, 203, 339, 769
TspRI CASTG 3 cut(s) 490, 1012, 1120
Vha464I CTTAAG 2 cut(s) 365, 685
XceI RCATGY 1 cut(s) 775
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XhoI CTCGAG 1 cut(s) 199
XspI CTAG 2 cut(s) 356, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.