Prupe.3G271400_v2.0.a1

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
25220859 .. 25223017
2159 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G271400.1

Sequence Viewer

Length: 1212 bp
ATGGAGTTGATGATGGTGAAGAATGAAGAGAACCCTGGGAGGCGTCGCCTGAGCACAGCAGATCGTGAGACTCAGGCAACCCGGTCTGTCAAGAGAAGGAGAAGAGACCCAGCTACAGTTGCAGTTAGTCGTGACAACAACCAGAGTGAGCAGCAGTTGCCACAAAAGCCAGCTGATCCAACCTCAGCTACCACAATGAAGAGAAGTTCAAGATTTCGCGGTGTCAGCAGGCATAGATGGACCGGTCGATTTGAAGCCCACTTGTGGGATAAGCTCTCTTGGAATGTAACACAGAAGAAGAAAGGGAAACAAGGAGCTTATGATGAAGAAGAATCTGCTGCAAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACGTCGACTTTCACCAACTTTCTGATATCGGACTATGAGAAAGAAATTGAGATAATGCAAACTGTGTCAAAAGAAGAGTATTTGGCCTCGTTAAGAAGAAGGAGCAGTGGCTTTTCAAGAGGTGTATCTAAGTACAGAGGAGTGGCAAGGCACCATCATAATGGTAGATGGGAAGCAAGAATAGGAAGAGTTTTTGGAAACAAGTACCTCTACCTTGGCACTTACAGCACCCAAGAGGAAGCAGCTCGTGCCTATGACATTGCAGCAATTGAGTACAGAGGGATCAATGCTGTGACTAACTTTGACTTGAGTTCTTACATAAGATGGCTAAAACCAACAGCAGACGATCCAATAACCACTCAAGAACCAGAGACAGTCGCGGAACCTCCGAATATGCCATTCATGGCCAACAGCTACATCCCAACAGGGGAGTCTTTCTCACACACAAATCCTTTTGCCTCTGATTACTTGAACTCCGCCCGAGAACAAGAAGTCATCGGTAGCAACATCCCTCTTAACACCGGTAGCAAGTCATCTTCTCCCACTGCACTTGGCCTCCTCCTTCAATCATCAATATTCAGAGAGTTGGTTCAGAAGAACTCGAACTTCTCAGAGGATGAGAGTACTGACGGAGAAGAAACAAAGAACCAGCCACAGGTTGGTAGTGATGATGAGTTCGGTGGAATTTTTTATGATGGAATTGGCAACAACCCGTTTGCTTGCTCTTCCAATTCTGTTGGAGATAACAACCCATGGAGCAGCATTACAAGCACCATTTTGCTCAATCAACCAACAAAAGCAAATGCCTCAGACTCTCTATTTTTCTTTTCTTAG

Protein Analysis

404

Amino Acids

45.37

Weight (kDa)

7.04

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 528
AccB7I CCANNNNNTGG 1 cut(s) 1037
AccI GTMKAC 1 cut(s) 383
AccII CGCG 2 cut(s) 219, 758
AciI CCGC 3 cut(s) 219, 758, 855
AclWI GGATC 3 cut(s) 170, 668, 719
AcoI YGGCCR 1 cut(s) 783
AcsI RAATTY 1 cut(s) 1062
AcyI GRCGYC 1 cut(s) 43
AfaI GTAC 4 cut(s) 512, 584, 653, 1003
AfiI CCNNNNNNNGG 5 cut(s) 264, 265, 805, 1033, 1037
AflII CTTAAG 1 cut(s) 365
AgeI ACCGGT 2 cut(s) 242, 899
AgsI TTSAA 5 cut(s) 210, 254, 495, 850, 944
AjnI CCWGG 1 cut(s) 34
AluBI AGCT 8 cut(s) 113, 173, 188, 274, 317, 359, 623, 792
AluI AGCT 8 cut(s) 113, 173, 188, 274, 317, 359, 623, 792
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 3 cut(s) 62, 99, 743
AlwI GGATC 3 cut(s) 170, 668, 719
Ama87I CYCGRG 1 cut(s) 858
AoxI GGCC 3 cut(s) 462, 783, 931
ApeKI GCWGC 6 cut(s) 151, 338, 359, 620, 641, 1137
ApoI RAATTY 1 cut(s) 1062
AsiGI ACCGGT 2 cut(s) 242, 899
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 28, 382
AvaI CYCGRG 1 cut(s) 858
AvaII GGWCC 1 cut(s) 240
BalI TGGCCA 1 cut(s) 785
BanI GGYRCC 1 cut(s) 528
BauI CACGAG 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 56
BbvCI CCTCAGC 1 cut(s) 184
BbvI GCAGC 6 cut(s) 163, 325, 346, 632, 653, 1149
BccI CCATC 6 cut(s) 7, 231, 540, 540, 696, 1067
BciT130I CCWGG 1 cut(s) 36
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 3 cut(s) 62, 99, 743
BfmI CTRYAG 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 365
BisI GCNGC 6 cut(s) 152, 339, 360, 621, 642, 1138
BlsI GCNGC 6 cut(s) 153, 340, 361, 622, 643, 1139
BmcAI AGTACT 1 cut(s) 1003
Bme1390I CCNGG 2 cut(s) 36, 82
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 858
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 530, 762
BmrFI CCNGG 2 cut(s) 36, 82
BplI GAGNNNNNCTC 2 cut(s) 800, 832
Bpu10I CCTNAGC 2 cut(s) 50, 184
BpuEI CTTGAG 2 cut(s) 706, 723
BpuMI CCSGG 1 cut(s) 82
BsaHI GRCGYC 1 cut(s) 43
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 34, 35, 592, 1130
BsaWI WCCGGW 2 cut(s) 242, 899
BsaXI ACNNNNNCTCC 4 cut(s) 836, 866, 918, 948
Bsc4I CCNNNNNNNGG 5 cut(s) 264, 265, 805, 1033, 1037
Bse118I RCCGGY 2 cut(s) 242, 899
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 4 cut(s) 34, 35, 592, 1130
BseGI GGATG 3 cut(s) 795, 885, 1000
BseLI CCNNNNNNNGG 5 cut(s) 264, 265, 805, 1033, 1037
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 5 cut(s) 41, 86, 198, 1002, 1200
BseRI GAGGAG 2 cut(s) 531, 926
BseXI GCAGC 6 cut(s) 163, 325, 346, 632, 653, 1149
BseYI CCCAGC 1 cut(s) 109
BsgI GTGCAG 2 cut(s) 345, 909
Bsh1236I CGCG 2 cut(s) 219, 758
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 464, 785, 933
BshNI GGYRCC 1 cut(s) 528
BshTI ACCGGT 2 cut(s) 242, 899
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 858
BsiSI CCGG 3 cut(s) 82, 243, 900
BslI CCNNNNNNNGG 5 cut(s) 264, 265, 805, 1033, 1037
BsmAI GTCTC 3 cut(s) 62, 99, 743
BsnI GGCC 3 cut(s) 464, 785, 933
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 858
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 4 cut(s) 61, 175, 660, 724
Bsp19I CCATGG 1 cut(s) 1130
BspACI CCGC 3 cut(s) 219, 758, 855
BspANI GGCC 3 cut(s) 464, 785, 933
BspCNI CTCAG 5 cut(s) 42, 85, 197, 1001, 1199
BspFNI CGCG 2 cut(s) 219, 758
BspLI GGNNCC 2 cut(s) 530, 762
BspPI GGATC 3 cut(s) 170, 668, 719
BspQI GCTCTTC 1 cut(s) 1108
BspT107I GGYRCC 1 cut(s) 528
BspTI CTTAAG 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 2 cut(s) 242, 899
BssAI RCCGGY 2 cut(s) 242, 899
BssECI CCNNGG 4 cut(s) 34, 35, 592, 1130
BssMI GATC 4 cut(s) 61, 175, 660, 724
BssNI GRCGYC 1 cut(s) 43
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 2 cut(s) 592, 1130
Bst2BI CACGAG 1 cut(s) 624
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 3 cut(s) 118, 442, 754
Bst6I CTCTTC 6 cut(s) 21, 97, 194, 447, 559, 1108
BstACI GRCGYC 1 cut(s) 43
BstAFI CTTAAG 1 cut(s) 365
BstAPI GCANNNNNTGC 2 cut(s) 157, 626
BstC8I GCNNGC 3 cut(s) 171, 230, 1099
BstDEI CTNAG 7 cut(s) 50, 72, 184, 507, 988, 1186, 1209
BstDSI CCRYGG 1 cut(s) 1130
BstF5I GGATG 3 cut(s) 795, 885, 1000
BstFNI CGCG 2 cut(s) 219, 758
BstKTI GATC 4 cut(s) 64, 178, 663, 727
BstMAI GTCTC 3 cut(s) 62, 99, 743
BstMBI GATC 4 cut(s) 61, 175, 660, 724
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 8 cut(s) 119, 157, 166, 225, 344, 603, 626, 1146
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 2 cut(s) 34, 80
BstSFI CTRYAG 1 cut(s) 114
BstUI CGCG 2 cut(s) 219, 758
BstV1I GCAGC 6 cut(s) 163, 325, 346, 632, 653, 1149
BstXI CCANNNNNNTGG 1 cut(s) 539
BsuRI GGCC 3 cut(s) 464, 785, 933
BtgI CCRYGG 1 cut(s) 1130
BtsCI GGATG 3 cut(s) 795, 885, 1000
BtsI GCAGTG 2 cut(s) 490, 921
BtsIMutI CAGTG 2 cut(s) 490, 921
Cac8I GCNNGC 3 cut(s) 171, 230, 1099
Cfr10I RCCGGY 2 cut(s) 242, 899
Cfr13I GGNCC 1 cut(s) 240
CseI GACGC 1 cut(s) 32
Csp6I GTAC 4 cut(s) 511, 583, 652, 1002
CspAI ACCGGT 2 cut(s) 242, 899
CspCI CAANNNNNGTGG 2 cut(s) 910, 945
CviAII CATG 2 cut(s) 781, 1131
CviQI GTAC 4 cut(s) 511, 583, 652, 1002
DdeI CTNAG 7 cut(s) 50, 72, 184, 507, 988, 1186, 1209
DpnI GATC 4 cut(s) 63, 177, 662, 726
DpnII GATC 4 cut(s) 61, 175, 660, 724
EaeI YGGCCR 1 cut(s) 783
Eam1104I CTCTTC 6 cut(s) 21, 97, 194, 447, 559, 1108
EarI CTCTTC 6 cut(s) 21, 97, 194, 447, 559, 1108
EciI GGCGGA 1 cut(s) 844
Eco130I CCWWGG 2 cut(s) 592, 1130
Eco31I GGTCTC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 1 cut(s) 240
Eco88I CYCGRG 1 cut(s) 858
EcoRII CCWGG 1 cut(s) 34
EcoRV GATATC 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 592, 1130
ErhI CCWWGG 2 cut(s) 592, 1130
FaeI CATG 2 cut(s) 784, 1134
FatI CATG 2 cut(s) 780, 1130
FauNDI CATATG 1 cut(s) 349
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 6 cut(s) 152, 339, 360, 621, 642, 1138
FokI GGATG 3 cut(s) 782, 872, 1007
Fsp4HI GCNGC 6 cut(s) 152, 339, 360, 621, 642, 1138
GluI GCNGC 6 cut(s) 152, 339, 360, 621, 642, 1138
GsaI CCCAGC 1 cut(s) 113
HaeIII GGCC 3 cut(s) 464, 785, 933
HapII CCGG 3 cut(s) 82, 243, 900
HgaI GACGC 1 cut(s) 32
Hin1I GRCGYC 1 cut(s) 43
Hin1II CATG 2 cut(s) 784, 1134
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 4 cut(s) 70, 332, 809, 1190
HpaII CCGG 3 cut(s) 82, 243, 900
HphI GGTGA 2 cut(s) 28, 382
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 8 cut(s) 402, 409, 768, 841, 959, 972, 991, 1189
Hpy188III TCNNGA 6 cut(s) 65, 91, 131, 210, 495, 740
Hpy8I GTNNAC 1 cut(s) 384
Hpy99I CGWCG 2 cut(s) 48, 385
HpyAV CCTTC 3 cut(s) 90, 471, 950
HpyCH4III ACNGT 3 cut(s) 118, 442, 754
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 6 cut(s) 122, 341, 362, 436, 641, 926
HpyF10VI GCNNNNNNNGC 8 cut(s) 119, 157, 166, 225, 344, 603, 626, 1146
HpyF3I CTNAG 7 cut(s) 50, 72, 184, 507, 988, 1186, 1209
HpySE526I ACGT 1 cut(s) 380
Hsp92I GRCGYC 1 cut(s) 43
Hsp92II CATG 2 cut(s) 784, 1134
Kzo9I GATC 4 cut(s) 61, 175, 660, 724
LguI GCTCTTC 1 cut(s) 1108
LmnI GCTCC 3 cut(s) 314, 480, 1134
Lsp1109I GCAGC 6 cut(s) 163, 325, 346, 632, 653, 1149
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 3 cut(s) 131, 286, 670
MalI GATC 4 cut(s) 63, 177, 662, 726
MboI GATC 4 cut(s) 61, 175, 660, 724
MfeI CAATTG 1 cut(s) 645
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 785
MluCI AATT 5 cut(s) 423, 645, 1062, 1077, 1108
MluNI TGGCCA 1 cut(s) 785
MlyI GAGTC 3 cut(s) 64, 818, 1184
MmeI TCCRAC 2 cut(s) 203, 1096
Mox20I TGGCCA 1 cut(s) 785
MscI TGGCCA 1 cut(s) 785
MseI TTAA 3 cut(s) 366, 470, 894
MslI CAYNNNNRTG 1 cut(s) 537
Msp20I TGGCCA 1 cut(s) 785
MspA1I CMGCKG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 3 cut(s) 82, 243, 900
MspR9I CCNGG 2 cut(s) 36, 82
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 2 cut(s) 219, 758
MwoI GCNNNNNNNGC 8 cut(s) 119, 157, 166, 225, 344, 603, 626, 1146
NciI CCSGG 1 cut(s) 82
NcoI CCATGG 1 cut(s) 1130
NdeI CATATG 1 cut(s) 349
NdeII GATC 4 cut(s) 61, 175, 660, 724
NlaIII CATG 2 cut(s) 784, 1134
NlaIV GGNNCC 2 cut(s) 530, 762
NmuCI GTSAC 2 cut(s) 131, 670
PasI CCCWGGG 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 1108
PfeI GAWTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 1037
PinAI ACCGGT 2 cut(s) 242, 899
PkrI GCNGC 6 cut(s) 153, 340, 361, 622, 643, 1139
PleI GAGTC 3 cut(s) 64, 817, 1184
PpsI GAGTC 3 cut(s) 64, 817, 1184
Psp6I CCWGG 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 530, 762
PspPI GGNCC 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 4 cut(s) 512, 584, 653, 1003
RsaNI GTAC 4 cut(s) 511, 583, 652, 1002
RseI CAYNNNNRTG 1 cut(s) 537
SalI GTCGAC 1 cut(s) 382
SapI GCTCTTC 1 cut(s) 1108
SaqAI TTAA 3 cut(s) 366, 470, 894
SatI GCNGC 6 cut(s) 152, 339, 360, 621, 642, 1138
Sau3AI GATC 4 cut(s) 61, 175, 660, 724
Sau96I GGNCC 1 cut(s) 240
ScaI AGTACT 1 cut(s) 1003
SchI GAGTC 3 cut(s) 64, 818, 1184
ScrFI CCNGG 2 cut(s) 36, 82
SduI GDGCHC 1 cut(s) 56
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 3 cut(s) 365, 685, 738
SmoI CTYRAG 3 cut(s) 365, 685, 738
Sse9I AATT 5 cut(s) 423, 645, 1062, 1077, 1108
SsiI CCGC 3 cut(s) 219, 758, 855
SspI AATATT 1 cut(s) 954
StyD4I CCNGG 2 cut(s) 34, 80
StyI CCWWGG 2 cut(s) 592, 1130
TaaI ACNGT 3 cut(s) 118, 442, 754
TaiI ACGT 1 cut(s) 383
TaqI TCGA 3 cut(s) 247, 383, 980
TasI AATT 5 cut(s) 423, 645, 1062, 1077, 1108
TatI WGTACW 3 cut(s) 510, 651, 1001
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 3 cut(s) 366, 470, 894
Tru9I TTAA 3 cut(s) 366, 470, 894
TscAI CASTG 2 cut(s) 490, 928
TseFI GTSAC 2 cut(s) 131, 670
TseI GCWGC 6 cut(s) 151, 338, 359, 620, 641, 1137
Tsp45I GTSAC 2 cut(s) 131, 670
TspDTI ATGAA 4 cut(s) 39, 212, 339, 769
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 2 cut(s) 490, 928
Van91I CCANNNNNTGG 1 cut(s) 1037
Vha464I CTTAAG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 1062
XcmI CCANNNNNNNNNTGG 1 cut(s) 1034
XmiI GTMKAC 1 cut(s) 383
ZrmI AGTACT 1 cut(s) 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.