FvH4_5g05920

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001710
Physical Location & Seq
Forward (+)
3480909 .. 3483553
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05920.t4

Sequence Viewer

Length: 792 bp
ATGTCGATGTCCAAGAGCTCCAAGATGCTTCAATTCATCAACTACCGCATGCGCGTCACGATCCAAGACGGCCGCCAGCTCGTCGGGAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTCCCGCCGTCAAAAGGCAAGAAGAACAACGAGGAACGCGAGGACCGCCGCACACTCGGGATGGTCCTCCTCCGCGGCGAAGAGGTCGTCTCCATGACAGTCGAGGGTCCGCCGCCTCAGGAAGAGTCCAGAGCCAAAGCCTCCAGCGCCGCCGCCATGGCCGGACCTGGAATCGGCCGCGGCGCCGGGAGAGGAGTCGTCGCGCCACTCGCTCAGGCTCAGCCGGGTCTCTCCGGTCCGGTTCGCGGCGTCGGTGGGCCTGCTCCTGGCATGATGCAGCCTCAGATTTCTCGCCCGCCGATGAACTATCCGGCTGCGCCGGTGCTCAGGCCACCGGGCCAGATGGCTGGTTATCCAGGGCAGGGGCCTCCACAGATGACTCGTGGACCACCGCCTTCTATGCCTCCTCCACAGTTTGCTAGGCCCGGCGGACCGCCGCAGTTTCCACCAGGTCCTCCACCAATGCAGTTTGCTCAGAGACCAATGGGGCCTCCTGGCCAGATGATGAGGGGTCCACCGCCTCCTGGAATGCAAGGTCCACCGCCTCGTCCTGGGATGCCTCCTCCACCTGGTGGTGTTCCTGTGTATGGACCTCCTCGTGGCATGCCGCCTCCACCCAACAACCAGAACCAGCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

264

Amino Acids

27.88

Weight (kDa)

11.03

Isoelectric Point (pI)

67.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 83 5.5e-17 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AccB7I CCANNNNNTGG 1 cut(s) 722
AccII CGCG 6 cut(s) 54, 189, 225, 330, 353, 396
AclWI GGATC 1 cut(s) 55
AcoI YGGCCR 4 cut(s) 70, 309, 325, 646
AcyI GRCGYC 2 cut(s) 333, 399
AdeI CACNNNGTG 1 cut(s) 722
AgsI TTSAA 1 cut(s) 32
AjnI CCWGG 8 cut(s) 316, 415, 505, 598, 643, 673, 700, 718
AluBI AGCT 3 cut(s) 18, 79, 151
AluI AGCT 3 cut(s) 18, 79, 151
Alw21I GWGCWC 2 cut(s) 20, 477
Alw26I GTCTC 3 cut(s) 244, 383, 622
AlwI GGATC 1 cut(s) 55
Ama87I CYCGRG 1 cut(s) 206
ApeKI GCWGC 2 cut(s) 427, 464
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 5 cut(s) 54, 299, 335, 355, 469
AsuC2I CCSGG 4 cut(s) 337, 375, 486, 576
AvaI CYCGRG 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 267
BalI TGGCCA 1 cut(s) 648
BanI GGYRCC 1 cut(s) 332
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 2 cut(s) 531, 747
Bbv12I GWGCWC 2 cut(s) 20, 477
BbvI GCAGC 2 cut(s) 439, 451
BccI CCATC 2 cut(s) 205, 487
BceAI ACGGC 2 cut(s) 85, 142
BciT130I CCWGG 8 cut(s) 318, 417, 507, 600, 645, 675, 702, 720
BcnI CCSGG 4 cut(s) 337, 375, 486, 576
BcoDI GTCTC 3 cut(s) 244, 383, 622
BfaI CTAG 1 cut(s) 570
BfoI RGCGCY 2 cut(s) 300, 336
BglI GCCNNNNNGGC 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 206
BmiI GGNNCC 5 cut(s) 258, 334, 516, 639, 663
BmsI GCATC 3 cut(s) 15, 414, 696
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 277
Bpu10I CCTNAGC 2 cut(s) 363, 476
Bpu1102I GCTNAGC 1 cut(s) 369
BpuMI CCSGG 4 cut(s) 337, 375, 486, 576
BsaHI GRCGYC 2 cut(s) 333, 399
BsaI GGTCTC 2 cut(s) 383, 622
BsaJI CCNNGG 6 cut(s) 124, 223, 306, 328, 506, 701
BsaWI WCCGGW 2 cut(s) 383, 388
Bse118I RCCGGY 1 cut(s) 469
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 8 cut(s) 318, 417, 507, 600, 645, 675, 702, 720
BseDI CCNNGG 6 cut(s) 124, 223, 306, 328, 506, 701
BseGI GGATG 2 cut(s) 216, 711
BseMII CTCAG 6 cut(s) 281, 377, 383, 446, 490, 638
BseRI GAGGAG 6 cut(s) 152, 209, 357, 546, 702, 735
BseX3I CGGCCG 2 cut(s) 70, 325
BseXI GCAGC 2 cut(s) 439, 451
Bsh1236I CGCG 6 cut(s) 54, 189, 225, 330, 353, 396
Bsh1285I CGRYCG 3 cut(s) 73, 106, 328
BshNI GGYRCC 1 cut(s) 332
BsiEI CGRYCG 3 cut(s) 73, 106, 328
BsiHKAI GWGCWC 2 cut(s) 20, 477
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 9 cut(s) 312, 336, 374, 384, 389, 461, 470, 485, 576
BsmAI GTCTC 3 cut(s) 244, 383, 622
BsmBI CGTCTC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 684
Bso31I GGTCTC 2 cut(s) 383, 622
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 20, 477
Bsp143I GATC 1 cut(s) 60
Bsp1720I GCTNAGC 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 306
BspCNI CTCAG 6 cut(s) 280, 376, 382, 445, 489, 637
BspFNI CGCG 6 cut(s) 54, 189, 225, 330, 353, 396
BspLI GGNNCC 5 cut(s) 258, 334, 516, 639, 663
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 332
BspTNI GGTCTC 2 cut(s) 383, 622
BsrFI RCCGGY 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 469
BssECI CCNNGG 6 cut(s) 124, 223, 306, 328, 506, 701
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 2 cut(s) 333, 399
BssSI CACGAG 2 cut(s) 531, 747
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 2 cut(s) 531, 747
Bst2UI CCWGG 8 cut(s) 318, 417, 507, 600, 645, 675, 702, 720
Bst4CI ACNGT 3 cut(s) 250, 564, 789
Bst6I CTCTTC 2 cut(s) 225, 267
BstACI GRCGYC 2 cut(s) 333, 399
BstC8I GCNNGC 5 cut(s) 50, 77, 411, 446, 755
BstDEI CTNAG 6 cut(s) 267, 363, 369, 432, 476, 624
BstDSI CCRYGG 3 cut(s) 223, 306, 328
BstF5I GGATG 2 cut(s) 216, 711
BstFNI CGCG 6 cut(s) 54, 189, 225, 330, 353, 396
BstH2I RGCGCY 2 cut(s) 300, 336
BstHHI GCGC 5 cut(s) 54, 299, 335, 355, 469
BstKTI GATC 1 cut(s) 63
BstMAI GTCTC 3 cut(s) 244, 383, 622
BstMBI GATC 1 cut(s) 60
BstMCI CGRYCG 3 cut(s) 73, 106, 328
BstMWI GCNNNNNNNGC 5 cut(s) 195, 296, 308, 359, 550
BstNI CCWGG 8 cut(s) 318, 417, 507, 600, 645, 675, 702, 720
BstNSI RCATGY 2 cut(s) 52, 757
BstUI CGCG 6 cut(s) 54, 189, 225, 330, 353, 396
BstV1I GCAGC 2 cut(s) 439, 451
BstXI CCANNNNNNTGG 1 cut(s) 497
BstZI CGGCCG 2 cut(s) 70, 325
Bsu36I CCTNAGG 1 cut(s) 267
BtgI CCRYGG 3 cut(s) 223, 306, 328
BtsCI GGATG 2 cut(s) 216, 711
Cac8I GCNNGC 5 cut(s) 50, 77, 411, 446, 755
CfoI GCGC 5 cut(s) 54, 299, 335, 355, 469
Cfr10I RCCGGY 1 cut(s) 469
Cfr42I CCGCGG 2 cut(s) 226, 331
CpoI CGGWCCG 2 cut(s) 386, 581
CseI GACGC 2 cut(s) 43, 388
CsiI ACCWGGT 2 cut(s) 598, 718
CspI CGGWCCG 2 cut(s) 386, 581
CviAII CATG 7 cut(s) 49, 94, 112, 244, 307, 421, 754
DdeI CTNAG 6 cut(s) 267, 363, 369, 432, 476, 624
DinI GGCGCC 1 cut(s) 334
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 722
EaeI YGGCCR 4 cut(s) 70, 309, 325, 646
EagI CGGCCG 2 cut(s) 70, 325
Eam1104I CTCTTC 2 cut(s) 225, 267
EarI CTCTTC 2 cut(s) 225, 267
EciI GGCGGA 2 cut(s) 249, 594
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 2 cut(s) 70, 325
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 383, 622
Eco52I CGGCCG 2 cut(s) 70, 325
Eco53kI GAGCTC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 3 cut(s) 515, 602, 638
EcoRII CCWGG 8 cut(s) 316, 415, 505, 598, 643, 673, 700, 718
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 20
EgeI GGCGCC 1 cut(s) 334
EheI GGCGCC 1 cut(s) 334
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 7 cut(s) 52, 97, 115, 247, 310, 424, 757
FaiI YATR 9 cut(s) 50, 95, 113, 245, 308, 422, 551, 738, 755
FatI CATG 7 cut(s) 48, 93, 111, 243, 306, 420, 753
FauI CCCGC 2 cut(s) 162, 453
FokI GGATG 2 cut(s) 223, 718
FriOI GRGCYC 1 cut(s) 20
FspBI CTAG 1 cut(s) 570
GlaI GCGC 5 cut(s) 53, 298, 334, 354, 468
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 2 cut(s) 300, 336
HapII CCGG 9 cut(s) 312, 336, 374, 384, 389, 461, 470, 485, 576
HgaI GACGC 2 cut(s) 43, 388
HhaI GCGC 5 cut(s) 54, 299, 335, 355, 469
Hin1I GRCGYC 2 cut(s) 333, 399
Hin1II CATG 7 cut(s) 52, 97, 115, 247, 310, 424, 757
Hin6I GCGC 5 cut(s) 52, 297, 333, 353, 467
HinP1I GCGC 5 cut(s) 52, 297, 333, 353, 467
HinfI GANTC 4 cut(s) 275, 321, 345, 529
HpaII CCGG 9 cut(s) 312, 336, 374, 384, 389, 461, 470, 485, 576
Hpy166II GTNNAC 3 cut(s) 536, 665, 689
Hpy188I TCNGA 2 cut(s) 435, 627
Hpy188III TCNNGA 5 cut(s) 58, 85, 208, 269, 279
Hpy8I GTNNAC 3 cut(s) 536, 665, 689
Hpy99I CGWCG 3 cut(s) 86, 353, 404
HpyAV CCTTC 2 cut(s) 109, 555
HpyCH4III ACNGT 3 cut(s) 250, 564, 789
HpyCH4V TGCA 3 cut(s) 427, 616, 682
HpyF10VI GCNNNNNNNGC 5 cut(s) 195, 296, 308, 359, 550
HpyF3I CTNAG 6 cut(s) 267, 363, 369, 432, 476, 624
Hsp92I GRCGYC 2 cut(s) 333, 399
Hsp92II CATG 7 cut(s) 52, 97, 115, 247, 310, 424, 757
HspAI GCGC 5 cut(s) 52, 297, 333, 353, 467
KasI GGCGCC 1 cut(s) 332
KspI CCGCGG 2 cut(s) 226, 331
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 3 cut(s) 23, 156, 418
Lsp1109I GCAGC 2 cut(s) 439, 451
LweI GCATC 3 cut(s) 15, 414, 696
MabI ACCWGGT 2 cut(s) 598, 718
MaeI CTAG 1 cut(s) 570
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 184, 242, 284
MhlI GDGCHC 2 cut(s) 20, 477
MlsI TGGCCA 1 cut(s) 648
MluCI AATT 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 648
Mly113I GGCGCC 1 cut(s) 333
MlyI GAGTC 3 cut(s) 284, 354, 523
Mox20I TGGCCA 1 cut(s) 648
MscI TGGCCA 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 225, 330
MspI CCGG 9 cut(s) 312, 336, 374, 384, 389, 461, 470, 485, 576
Mva1269I GAATGC 1 cut(s) 684
MvaI CCWGG 8 cut(s) 318, 417, 507, 600, 645, 675, 702, 720
MvnI CGCG 6 cut(s) 54, 189, 225, 330, 353, 396
MwoI GCNNNNNNNGC 5 cut(s) 195, 296, 308, 359, 550
NarI GGCGCC 1 cut(s) 333
NciI CCSGG 4 cut(s) 337, 375, 486, 576
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 60
NlaIII CATG 7 cut(s) 52, 97, 115, 247, 310, 424, 757
NlaIV GGNNCC 5 cut(s) 258, 334, 516, 639, 663
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 2 cut(s) 52, 757
PaeI GCATGC 2 cut(s) 52, 757
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 132, 186
PctI GAATGC 1 cut(s) 684
PfeI GAWTC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 722
PfoI TCCNGGA 1 cut(s) 673
PleI GAGTC 3 cut(s) 283, 353, 523
PluTI GGCGCC 1 cut(s) 336
PpsI GAGTC 3 cut(s) 283, 353, 523
PpuMI RGGWCCY 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 8 cut(s) 316, 415, 505, 598, 643, 673, 700, 718
PspGI CCWGG 8 cut(s) 316, 415, 505, 598, 643, 673, 700, 718
PspN4I GGNNCC 5 cut(s) 258, 334, 516, 639, 663
PspPPI RGGWCCY 1 cut(s) 602
Rsr2I CGGWCCG 2 cut(s) 386, 581
RsrII CGGWCCG 2 cut(s) 386, 581
SacI GAGCTC 1 cut(s) 20
SacII CCGCGG 2 cut(s) 226, 331
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 3 cut(s) 284, 354, 523
SduI GDGCHC 2 cut(s) 20, 477
SexAI ACCWGGT 2 cut(s) 598, 718
SfaNI GCATC 3 cut(s) 15, 414, 696
SfoI GGCGCC 1 cut(s) 334
Sfr303I CCGCGG 2 cut(s) 226, 331
SgrAI CRCCGGYG 1 cut(s) 469
SgrBI CCGCGG 2 cut(s) 226, 331
SphI GCATGC 2 cut(s) 52, 757
Sse9I AATT 1 cut(s) 32
SspDI GGCGCC 1 cut(s) 332
SspMI CTAG 1 cut(s) 570
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 250, 564, 789
TaqI TCGA 3 cut(s) 5, 102, 252
TasI AATT 1 cut(s) 32
TfiI GAWTC 1 cut(s) 321
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 427, 464
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 25, 82, 128, 467
TspGWI ACGGA 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 722
XceI RCATGY 2 cut(s) 52, 757
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.