Rw7G011200

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001710
Physical Location & Seq
Reverse (-)
10461417 .. 10463731
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G011200.1

Sequence Viewer

Length: 888 bp
ATGTCGATGTCGAAGAGCTCCAAGATGCTTCAATTCATCAACTACCGCATGCGGGTCACAATCCAAGACGGACGCCAGCTCGTCGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTCCCCCCGGCGAAAGGCAAGAAGACCAACGAAGAACGCGACGACCGCCGCACTCTAGGGATGGTCCTCCTCCGCGGCGAAGAGGTCGTCTCCATGACCGTCGAGGGCCCCCCTCCTCAGGAAGAGTCCAGAGCCAAAGCCTCCAGCGCCGCCGCCATGGCCGGGCCTGGAATCGGCCGCGGCGCCGGACGAGGCGTGGTGGCGCCACTCGCGCAGGCTCAGCCCGGTCTCTCCGGTCCGGTTCGCGGTGTCGGTGGGCCTGCTCCGGGAATGATGCAGCCTCAGATTTCTCGCCCGCCCATGCCGAATCTGTCTGCTCCGCCGATGAACTATCCGTCTGCGCCGGTGCTCAGGCCACCTGGCCAGATGGCTGGATATCCCCCAGGGCAGGGCCCGCCGCAGATGGCCAGGGGACCACCGCCTTCAATGCCTCCTCCGCAGTTTACTCGGCCCGGCGGTCCACCTCAGTTTCCAGGCCCTCCACCAATGCAGTTTGCTCAGAGACCAATGGGGCCTCCTGGCCAGATGATGAGGGGTCCACCGCCCCGCCGCGGCCTGGAATGCAAGGTCCACCGCCTCGTCCTGGGATGCCTCCTCCACCTGGTGGTGTTCCTTTGTACGGACAGCCTCGTGGCATGCCGCCTCCACCCAACTCTCAGAACCAGCAACAAAATCAGCAGCAACAGTGATTTGGATGTGGATTGGTCAAATCTCTGTATAAGGGTGCTGCTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

295

Amino Acids

31.8

Weight (kDa)

10.32

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 83 6.7e-17 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 352
AccB7I CCANNNNNTGG 1 cut(s) 754
AccII CGCG 6 cut(s) 189, 225, 330, 362, 396, 702
AcoI YGGCCR 5 cut(s) 309, 325, 511, 555, 670
AcyI GRCGYC 3 cut(s) 73, 333, 353
AdeI CACNNNGTG 1 cut(s) 754
AfaI GTAC 1 cut(s) 769
AgsI TTSAA 2 cut(s) 32, 576
AjnI CCWGG 9 cut(s) 316, 508, 532, 557, 622, 667, 705, 732, 750
AluBI AGCT 3 cut(s) 18, 79, 151
AluI AGCT 3 cut(s) 18, 79, 151
Alw21I GWGCWC 2 cut(s) 20, 501
Alw26I GTCTC 3 cut(s) 244, 383, 646
ApaI GGGCCC 2 cut(s) 260, 545
ApeKI GCWGC 3 cut(s) 427, 828, 877
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 5 cut(s) 299, 335, 355, 364, 493
AsuC2I CCSGG 5 cut(s) 158, 313, 375, 417, 603
AvaII GGWCC 6 cut(s) 214, 386, 563, 608, 686, 718
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 2 cut(s) 260, 545
BalI TGGCCA 3 cut(s) 513, 557, 672
BanI GGYRCC 2 cut(s) 332, 352
BanII GRGCYC 3 cut(s) 20, 260, 545
BauI CACGAG 1 cut(s) 779
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 20, 501
BbvI GCAGC 3 cut(s) 439, 840, 864
BccI CCATC 3 cut(s) 205, 511, 547
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 707, 734, 752
BcnI CCSGG 5 cut(s) 158, 313, 375, 417, 603
BcoDI GTCTC 3 cut(s) 244, 383, 646
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 3 cut(s) 300, 336, 356
BglI GCCNNNNNGGC 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 369
Bme18I GGWCC 6 cut(s) 214, 386, 563, 608, 686, 718
BmiI GGNNCC 8 cut(s) 258, 259, 334, 354, 543, 564, 663, 687
BmsI GCATC 3 cut(s) 15, 414, 728
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 500
Bpu1102I GCTNAGC 1 cut(s) 369
BpuMI CCSGG 5 cut(s) 158, 313, 375, 417, 603
BsaHI GRCGYC 3 cut(s) 73, 333, 353
BsaI GGTCTC 2 cut(s) 383, 646
BsaWI WCCGGW 2 cut(s) 383, 388
Bse118I RCCGGY 1 cut(s) 493
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 707, 734, 752
BseGI GGATG 3 cut(s) 216, 743, 850
BseMII CTCAG 7 cut(s) 281, 383, 446, 514, 629, 662, 820
BseRI GAGGAG 5 cut(s) 152, 209, 255, 573, 734
BseSI GKGCMC 2 cut(s) 260, 545
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 3 cut(s) 439, 840, 864
Bsh1236I CGCG 6 cut(s) 189, 225, 330, 362, 396, 702
Bsh1285I CGRYCG 3 cut(s) 106, 196, 328
BshNI GGYRCC 2 cut(s) 332, 352
BsiEI CGRYCG 3 cut(s) 106, 196, 328
BsiHKAI GWGCWC 2 cut(s) 20, 501
BsiSI CCGG 9 cut(s) 158, 312, 336, 375, 384, 389, 416, 494, 603
BslFI GGGAC 1 cut(s) 576
BsmAI GTCTC 3 cut(s) 244, 383, 646
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 576
BsmI GAATGC 1 cut(s) 716
Bso31I GGTCTC 2 cut(s) 383, 646
Bsp120I GGGCCC 2 cut(s) 256, 541
Bsp1286I GDGCHC 4 cut(s) 20, 260, 501, 545
Bsp1720I GCTNAGC 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 306
BspCNI CTCAG 7 cut(s) 280, 382, 445, 513, 628, 661, 819
BspFNI CGCG 6 cut(s) 189, 225, 330, 362, 396, 702
BspLI GGNNCC 8 cut(s) 258, 259, 334, 354, 543, 564, 663, 687
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 332, 352
BspTNI GGTCTC 2 cut(s) 383, 646
BsrFI RCCGGY 1 cut(s) 493
BssAI RCCGGY 1 cut(s) 493
BssNI GRCGYC 3 cut(s) 73, 333, 353
BssSI CACGAG 1 cut(s) 779
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 779
Bst2UI CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 707, 734, 752
Bst4CI ACNGT 2 cut(s) 250, 836
Bst6I CTCTTC 3 cut(s) 8, 225, 267
BstACI GRCGYC 3 cut(s) 73, 333, 353
BstC8I GCNNGC 8 cut(s) 50, 77, 149, 366, 411, 446, 545, 787
BstDEI CTNAG 7 cut(s) 267, 369, 432, 500, 615, 648, 806
BstDSI CCRYGG 4 cut(s) 223, 306, 328, 700
BstF5I GGATG 3 cut(s) 216, 743, 850
BstFNI CGCG 6 cut(s) 189, 225, 330, 362, 396, 702
BstH2I RGCGCY 3 cut(s) 300, 336, 356
BstHHI GCGC 5 cut(s) 299, 335, 355, 364, 493
BstMAI GTCTC 3 cut(s) 244, 383, 646
BstMCI CGRYCG 3 cut(s) 106, 196, 328
BstNI CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 707, 734, 752
BstNSI RCATGY 2 cut(s) 52, 789
BstSLI GKGCMC 2 cut(s) 260, 545
BstUI CGCG 6 cut(s) 189, 225, 330, 362, 396, 702
BstV1I GCAGC 3 cut(s) 439, 840, 864
BstV2I GAAGAC 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 521
BstZI CGGCCG 1 cut(s) 325
Bsu36I CCTNAGG 1 cut(s) 267
BtgI CCRYGG 4 cut(s) 223, 306, 328, 700
BtsCI GGATG 3 cut(s) 216, 743, 850
BtsIMutI CAGTG 1 cut(s) 841
Cac8I GCNNGC 8 cut(s) 50, 77, 149, 366, 411, 446, 545, 787
CfoI GCGC 5 cut(s) 299, 335, 355, 364, 493
Cfr10I RCCGGY 1 cut(s) 493
Cfr42I CCGCGG 3 cut(s) 226, 331, 703
CpoI CGGWCCG 1 cut(s) 386
CseI GACGC 1 cut(s) 81
CsiI ACCWGGT 1 cut(s) 750
Csp6I GTAC 1 cut(s) 768
CspI CGGWCCG 1 cut(s) 386
CviAII CATG 7 cut(s) 49, 94, 112, 244, 307, 451, 786
CviQI GTAC 1 cut(s) 768
DdeI CTNAG 7 cut(s) 267, 369, 432, 500, 615, 648, 806
DinI GGCGCC 2 cut(s) 334, 354
DraIII CACNNNGTG 1 cut(s) 754
EaeI YGGCCR 5 cut(s) 309, 325, 511, 555, 670
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 8, 225, 267
EarI CTCTTC 3 cut(s) 8, 225, 267
EciI GGCGGA 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 3 cut(s) 20, 260, 545
Eco31I GGTCTC 2 cut(s) 383, 646
Eco32I GATATC 1 cut(s) 527
Eco47I GGWCC 6 cut(s) 214, 386, 563, 608, 686, 718
Eco52I CGGCCG 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 5 cut(s) 256, 257, 541, 626, 662
EcoRII CCWGG 9 cut(s) 316, 508, 532, 557, 622, 667, 705, 732, 750
EcoRV GATATC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 3 cut(s) 20, 260, 545
EgeI GGCGCC 2 cut(s) 334, 354
EheI GGCGCC 2 cut(s) 334, 354
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 7 cut(s) 52, 97, 115, 247, 310, 454, 789
FaiI YATR 8 cut(s) 50, 95, 113, 245, 308, 452, 787, 869
FaqI GGGAC 1 cut(s) 576
FatI CATG 7 cut(s) 48, 93, 111, 243, 306, 450, 785
FauI CCCGC 4 cut(s) 45, 453, 552, 704
FokI GGATG 3 cut(s) 223, 750, 857
FriOI GRGCYC 3 cut(s) 20, 260, 545
FspBI CTAG 1 cut(s) 206
GlaI GCGC 5 cut(s) 298, 334, 354, 363, 492
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 3 cut(s) 300, 336, 356
HapII CCGG 9 cut(s) 158, 312, 336, 375, 384, 389, 416, 494, 603
HgaI GACGC 1 cut(s) 81
HhaI GCGC 5 cut(s) 299, 335, 355, 364, 493
Hin1I GRCGYC 3 cut(s) 73, 333, 353
Hin1II CATG 7 cut(s) 52, 97, 115, 247, 310, 454, 789
Hin6I GCGC 5 cut(s) 297, 333, 353, 362, 491
HinP1I GCGC 5 cut(s) 297, 333, 353, 362, 491
HinfI GANTC 3 cut(s) 275, 321, 457
HpaII CCGG 9 cut(s) 158, 312, 336, 375, 384, 389, 416, 494, 603
Hpy166II GTNNAC 4 cut(s) 594, 611, 689, 721
Hpy188I TCNGA 4 cut(s) 435, 651, 809, 887
Hpy188III TCNNGA 2 cut(s) 269, 279
Hpy8I GTNNAC 4 cut(s) 594, 611, 689, 721
Hpy99I CGWCG 3 cut(s) 86, 194, 254
HpyAV CCTTC 2 cut(s) 109, 582
HpyCH4III ACNGT 2 cut(s) 250, 836
HpyCH4V TGCA 3 cut(s) 427, 640, 714
HpyF3I CTNAG 7 cut(s) 267, 369, 432, 500, 615, 648, 806
Hsp92I GRCGYC 3 cut(s) 73, 333, 353
Hsp92II CATG 7 cut(s) 52, 97, 115, 247, 310, 454, 789
HspAI GCGC 5 cut(s) 297, 333, 353, 362, 491
KasI GGCGCC 2 cut(s) 332, 352
KspI CCGCGG 3 cut(s) 226, 331, 703
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 23, 156, 418, 472
Lsp1109I GCAGC 3 cut(s) 439, 840, 864
LweI GCATC 3 cut(s) 15, 414, 728
MabI ACCWGGT 1 cut(s) 750
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 6 cut(s) 25, 184, 194, 242, 284, 874
MhlI GDGCHC 4 cut(s) 20, 260, 501, 545
MlsI TGGCCA 3 cut(s) 513, 557, 672
MluCI AATT 1 cut(s) 32
MluNI TGGCCA 3 cut(s) 513, 557, 672
Mly113I GGCGCC 2 cut(s) 333, 353
MlyI GAGTC 1 cut(s) 284
Mox20I TGGCCA 3 cut(s) 513, 557, 672
MscI TGGCCA 3 cut(s) 513, 557, 672
Msp20I TGGCCA 3 cut(s) 513, 557, 672
MspA1I CMGCKG 3 cut(s) 225, 330, 702
MspI CCGG 9 cut(s) 158, 312, 336, 375, 384, 389, 416, 494, 603
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 707, 734, 752
MvnI CGCG 6 cut(s) 189, 225, 330, 362, 396, 702
NarI GGCGCC 2 cut(s) 333, 353
NciI CCSGG 5 cut(s) 158, 313, 375, 417, 603
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 7 cut(s) 52, 97, 115, 247, 310, 454, 789
NlaIV GGNNCC 8 cut(s) 258, 259, 334, 354, 543, 564, 663, 687
NmeAIII GCCGAG 2 cut(s) 105, 577
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 2 cut(s) 52, 789
PaeI GCATGC 2 cut(s) 52, 789
PasI CCCWGGG 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 132, 186
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 2 cut(s) 321, 457
PflMI CCANNNNNTGG 1 cut(s) 754
PfoI TCCNGGA 1 cut(s) 415
PleI GAGTC 1 cut(s) 283
PluTI GGCGCC 2 cut(s) 336, 356
PpsI GAGTC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 9 cut(s) 316, 508, 532, 557, 622, 667, 705, 732, 750
PspGI CCWGG 9 cut(s) 316, 508, 532, 557, 622, 667, 705, 732, 750
PspN4I GGNNCC 8 cut(s) 258, 259, 334, 354, 543, 564, 663, 687
PspOMI GGGCCC 2 cut(s) 256, 541
RsaI GTAC 1 cut(s) 769
RsaNI GTAC 1 cut(s) 768
Rsr2I CGGWCCG 1 cut(s) 386
RsrII CGGWCCG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 20
SacII CCGCGG 3 cut(s) 226, 331, 703
SapI GCTCTTC 1 cut(s) 8
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 4 cut(s) 20, 260, 501, 545
SetI ASST 9 cut(s) 20, 81, 120, 153, 237, 511, 616, 720, 753
SexAI ACCWGGT 1 cut(s) 750
SfaNI GCATC 3 cut(s) 15, 414, 728
SfoI GGCGCC 2 cut(s) 334, 354
Sfr303I CCGCGG 3 cut(s) 226, 331, 703
SgrAI CRCCGGYG 1 cut(s) 493
SgrBI CCGCGG 3 cut(s) 226, 331, 703
SinI GGWCC 6 cut(s) 214, 386, 563, 608, 686, 718
SphI GCATGC 2 cut(s) 52, 789
Sse9I AATT 1 cut(s) 32
SspDI GGCGCC 2 cut(s) 332, 352
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 250, 836
TaqI TCGA 4 cut(s) 5, 11, 102, 252
TasI AATT 1 cut(s) 32
TfiI GAWTC 2 cut(s) 321, 457
TscAI CASTG 1 cut(s) 841
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 427, 828, 877
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 25, 82, 128, 491
TspGWI ACGGA 3 cut(s) 84, 474, 785
TspRI CASTG 1 cut(s) 841
Van91I CCANNNNNTGG 1 cut(s) 754
VpaK11BI GGWCC 6 cut(s) 214, 386, 563, 608, 686, 718
XceI RCATGY 2 cut(s) 52, 789
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.