MD04G1002600.v1.1

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001710
Physical Location & Seq
Reverse (-)
393972 .. 394361
390 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1002600.v1.1.491

Sequence Viewer

Length: 390 bp
ATGTCGATGTCGAAAAGCTCTAAGATGCTGCAATTCATCAACTACCAGATGCGAGTGACAATCCAAGACTGCAGACGGCTAGTCGGTAAGTTCATAGCCTTCGATCACCATATGAATCTCGTCATCGGCGACTACGAGGAGTTTCACAAGTTGCCTCCACTGAAAGGAAAGAAGACCAACGAGGAGTGCGATGATCGCCGGACACTGGGCCTCGTCCTCCTCCACGGCGAAGAGGTTGTCTCCATGACTGTCAAGGGCCCACATTCTCAGGAAGAATCTTGTGCTAAGACAACCAGTGCAGCTGCTTTGGCTAGGTCCTGGTTTGGGCCACGCCGTCGGATGAGGTATCCCCACTGCTTCGATAGCCCAAGCCCAGCCTGGTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

130

Amino Acids

14.83

Weight (kDa)

9.18

Isoelectric Point (pI)

74.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 83 1e-12 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 3 cut(s) 164, 205, 324
AhdI GACNNNNNGTC 1 cut(s) 80
AjnI CCWGG 2 cut(s) 317, 377
AluBI AGCT 2 cut(s) 18, 302
AluI AGCT 2 cut(s) 18, 302
Alw26I GTCTC 1 cut(s) 244
AoxI GGCC 3 cut(s) 208, 256, 326
ApaI GGGCCC 1 cut(s) 260
ApeKI GCWGC 3 cut(s) 28, 299, 302
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspS9I GGNCC 5 cut(s) 208, 256, 257, 315, 326
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 15, 289, 311
BceAI ACGGC 3 cut(s) 92, 241, 318
BciT130I CCWGG 2 cut(s) 319, 379
BciVI GTATCC 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 80, 312
BfmI CTRYAG 1 cut(s) 70
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 3 cut(s) 29, 300, 303
BlsI GCNGC 3 cut(s) 30, 301, 304
Bme1390I CCNGG 2 cut(s) 319, 379
Bme18I GGWCC 1 cut(s) 315
BmeRI GACNNNNNGTC 1 cut(s) 80
BmgT120I GGNCC 5 cut(s) 208, 256, 257, 315, 326
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 319, 379
BmrI ACTGGG 1 cut(s) 215
BmsI GCATC 2 cut(s) 15, 39
BmuI ACTGGG 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 205, 324
Bse1I ACTGG 2 cut(s) 210, 294
BseBI CCWGG 2 cut(s) 319, 379
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 3 cut(s) 164, 205, 324
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 2 cut(s) 210, 294
BseRI GAGGAG 3 cut(s) 152, 197, 209
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 3 cut(s) 15, 289, 311
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 3 cut(s) 210, 258, 328
BsiSI CCGG 1 cut(s) 199
BslI CCNNNNNNNGG 3 cut(s) 164, 205, 324
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 3 cut(s) 210, 258, 328
Bsp120I GGGCCC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 103, 193
BspANI GGCC 3 cut(s) 210, 258, 328
BspCNI CTCAG 1 cut(s) 280
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 74
BsrI ACTGG 2 cut(s) 210, 294
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 103, 193
Bst2UI CCWGG 2 cut(s) 319, 379
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 225
BstDEI CTNAG 3 cut(s) 21, 267, 285
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 2 cut(s) 106, 196
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 2 cut(s) 103, 193
BstMWI GCNNNNNNNGC 3 cut(s) 195, 308, 363
BstNI CCWGG 2 cut(s) 319, 379
BstSCI CCNGG 2 cut(s) 317, 377
BstSFI CTRYAG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 15, 289, 311
BstV2I GAAGAC 1 cut(s) 179
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 3 cut(s) 210, 258, 328
BtgI CCRYGG 1 cut(s) 223
BtgZI GCGATG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 345
BtsI GCAGTG 1 cut(s) 352
BtsIMutI CAGTG 4 cut(s) 158, 203, 301, 352
Cfr13I GGNCC 5 cut(s) 208, 256, 257, 315, 326
CviAII CATG 1 cut(s) 244
DdeI CTNAG 3 cut(s) 21, 267, 285
DpnI GATC 2 cut(s) 105, 195
DpnII GATC 2 cut(s) 103, 193
DriI GACNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 225
Eam1105I GACNNNNNGTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 315
EcoO109I RGGNCCY 2 cut(s) 256, 315
EcoRII CCWGG 2 cut(s) 317, 377
EcoT38I GRGCYC 1 cut(s) 260
FaeI CATG 1 cut(s) 247
FaiI YATR 4 cut(s) 95, 111, 113, 245
FatI CATG 1 cut(s) 243
FauNDI CATATG 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 29, 300, 303
FokI GGATG 1 cut(s) 352
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 29, 300, 303
FspBI CTAG 2 cut(s) 80, 312
GluI GCNGC 3 cut(s) 29, 300, 303
GsaI CCCAGC 1 cut(s) 377
HaeIII GGCC 3 cut(s) 210, 258, 328
HapII CCGG 1 cut(s) 199
Hin1II CATG 1 cut(s) 247
HinfI GANTC 2 cut(s) 115, 275
HpaII CCGG 1 cut(s) 199
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 339, 389
Hpy188III TCNNGA 1 cut(s) 269
Hpy99I CGWCG 1 cut(s) 339
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 3 cut(s) 31, 72, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 308, 363
HpyF3I CTNAG 3 cut(s) 21, 267, 285
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 2 cut(s) 103, 193
LpnPI CCDG 8 cut(s) 59, 191, 212, 254, 304, 307, 331, 364
Lsp1109I GCAGC 3 cut(s) 15, 289, 311
LweI GCATC 2 cut(s) 15, 39
MaeI CTAG 2 cut(s) 80, 312
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 105, 195
MboI GATC 2 cut(s) 103, 193
MboII GAAGA 3 cut(s) 184, 242, 284
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 8 cut(s) 130, 165, 175, 221, 226, 227, 230, 336
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 2 cut(s) 319, 379
MvaI CCWGG 2 cut(s) 319, 379
MwoI GCNNNNNNNGC 3 cut(s) 195, 308, 363
NdeI CATATG 1 cut(s) 111
NdeII GATC 2 cut(s) 103, 193
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 132, 186
PfeI GAWTC 2 cut(s) 115, 275
PkrI GCNGC 3 cut(s) 30, 301, 304
PpuMI RGGWCCY 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 317, 377
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 2 cut(s) 317, 377
PspN4I GGNNCC 1 cut(s) 258
PspOMI GGGCCC 1 cut(s) 256
PspPI GGNCC 5 cut(s) 208, 256, 257, 315, 326
PspPPI RGGWCCY 1 cut(s) 315
PstI CTGCAG 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 302
SatI GCNGC 3 cut(s) 29, 300, 303
Sau3AI GATC 2 cut(s) 103, 193
Sau96I GGNCC 5 cut(s) 208, 256, 257, 315, 326
ScrFI CCNGG 2 cut(s) 319, 379
SduI GDGCHC 1 cut(s) 260
SetI ASST 5 cut(s) 20, 237, 304, 317, 347
SfaNI GCATC 2 cut(s) 15, 39
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 315
Sse9I AATT 1 cut(s) 32
SspMI CTAG 2 cut(s) 80, 312
StyD4I CCNGG 2 cut(s) 317, 377
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 4 cut(s) 5, 11, 102, 360
TasI AATT 1 cut(s) 32
TfiI GAWTC 2 cut(s) 115, 275
TscAI CASTG 4 cut(s) 165, 210, 301, 359
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 3 cut(s) 28, 299, 302
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 25, 82, 128
TspRI CASTG 4 cut(s) 165, 210, 301, 359
VpaK11BI GGWCC 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 375
XspI CTAG 2 cut(s) 80, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.