RLG00000025677

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001710
Physical Location & Seq
Forward (+)
47532089 .. 47532895
807 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025677

Sequence Viewer

Length: 807 bp
ATGTCGATGTCGAAGAGCTCCAAGATGCTCCAGTTCATCAACTACCGCATGAGAGTGACGATCCAGGACGGCCGTCAGCTCGTCGGAAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGGAAGCTTCCTCCGGCCAAAGGCGCCGCCGCCAAGAAGAACACCAACACCAACGAGGAACGCGACGACCGCCGTACTCTCGGCCTCGTCCTCCTCCGCGGCGAGGAGGTCATCTCCATGACCGTCGAGGGCCCGCCGCCTCAGGAGGAGTCACGCGCCAAGGCCGCGAGTGCCGCCGCTCTTTCCGGCTCCGGAATCGGACGCGCCGCCGGCAGGGGGATCGTGACTCCTCCGGTGGCCCAGGCCCAGCCCGGTCTCTCCGGCCCCGTCCGCGGCGTCGGCGGGCCCGCTCCCGGCATGATGCAGCCTCAGATGTCTCGCCCTAACCTCTCGGCGCCTCCGATGACGTATCCGGCTGCTCCGGTGATCCGTCCCCCGCCGCAGATGTATCCCGGCCAGGGACCACCACCGATGGTGCGTGGCCCGCCGCCGCAGTTTCCTCCTCCCGGTGCTAGGCCCGGCGGTCCACCTCAGCAGTTTCCCGGTCCTCCGATGCAGTATGGGCAGAGACCAATGGGGCCTCCACCGCCGGGGCCTCCGGGGCAGATGATGAGGGGTCCACCACCTCGCCAAGGAATGCCGCCTCCTCCCGGTGTGTTTGGAGGACCTCCACGTGGAATGCCGCCACCGCCTCAGAACCCTAACCAGCAGCAGCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

269

Amino Acids

28.37

Weight (kDa)

11.03

Isoelectric Point (pI)

65.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 89 2.6e-16 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 167, 478
AccBSI CCGCTC 2 cut(s) 323, 434
AccII CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
AccIII TCCGGA 2 cut(s) 144, 335
AclWI GGATC 3 cut(s) 55, 371, 505
AcoI YGGCCR 3 cut(s) 70, 159, 538
AcvI CACGTG 1 cut(s) 758
AcyI GRCGYC 3 cut(s) 168, 420, 479
AfaI GTAC 1 cut(s) 220
AjnI CCWGG 3 cut(s) 63, 384, 540
AluBI AGCT 3 cut(s) 18, 79, 151
AluI AGCT 3 cut(s) 18, 79, 151
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 3 cut(s) 404, 465, 646
AlwI GGATC 3 cut(s) 55, 371, 505
Aor13HI TCCGGA 2 cut(s) 144, 335
ApaI GGGCCC 2 cut(s) 278, 432
ApeKI GCWGC 4 cut(s) 448, 500, 793, 796
AspLEI GCGC 4 cut(s) 170, 302, 350, 481
AsuC2I CCSGG 9 cut(s) 396, 438, 537, 591, 603, 627, 675, 684, 735
AsuHPI GGTGA 1 cut(s) 520
AvaII GGWCC 5 cut(s) 545, 608, 629, 701, 749
AxyI CCTNAGG 1 cut(s) 285
BaeGI GKGCMC 2 cut(s) 278, 432
BanI GGYRCC 2 cut(s) 167, 478
BanII GRGCYC 3 cut(s) 20, 278, 432
BbrPI CACGTG 1 cut(s) 758
Bbv12I GWGCWC 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 460, 487
BccI CCATC 1 cut(s) 550
BceAI ACGGC 3 cut(s) 57, 85, 201
BcgI CGANNNNNNTGC 2 cut(s) 346, 380
BciT130I CCWGG 3 cut(s) 65, 386, 542
BciVI GTATCC 2 cut(s) 504, 543
BcnI CCSGG 9 cut(s) 396, 438, 537, 591, 603, 627, 675, 684, 735
BcoDI GTCTC 3 cut(s) 404, 465, 646
BfaI CTAG 1 cut(s) 597
BfoI RGCGCY 2 cut(s) 171, 482
BfuI GTATCC 2 cut(s) 504, 543
BglI GCCNNNNNGGC 1 cut(s) 685
Bme18I GGWCC 5 cut(s) 545, 608, 629, 701, 749
BmsI GCATC 3 cut(s) 15, 435, 627
BoxI GACNNNNGTC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpmI CTGGAG 1 cut(s) 14
Bpu10I CCTNAGC 1 cut(s) 615
BpuMI CCSGG 9 cut(s) 396, 438, 537, 591, 603, 627, 675, 684, 735
BsaAI YACGTR 1 cut(s) 758
BsaHI GRCGYC 3 cut(s) 168, 420, 479
BsaI GGTCTC 2 cut(s) 404, 646
BsaJI CCNNGG 9 cut(s) 124, 241, 303, 384, 415, 541, 674, 683, 715
BsaWI WCCGGW 4 cut(s) 144, 335, 376, 505
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 31
Bse21I CCTNAGG 1 cut(s) 285
BseAI TCCGGA 2 cut(s) 144, 335
BseBI CCWGG 3 cut(s) 65, 386, 542
BseDI CCNNGG 9 cut(s) 124, 241, 303, 384, 415, 541, 674, 683, 715
BseMII CTCAG 4 cut(s) 299, 467, 629, 791
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 7 cut(s) 152, 227, 263, 305, 363, 576, 720
BseSI GKGCMC 2 cut(s) 278, 432
BseX3I CGGCCG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 460, 487
BseYI CCCAGC 1 cut(s) 390
Bsh1236I CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
Bsh1285I CGRYCG 3 cut(s) 73, 106, 214
BshNI GGYRCC 2 cut(s) 167, 478
BsiEI CGRYCG 3 cut(s) 73, 106, 214
BsiHKAI GWGCWC 1 cut(s) 20
BslFI GGGAC 2 cut(s) 501, 558
BsmAI GTCTC 3 cut(s) 404, 465, 646
BsmFI GGGAC 2 cut(s) 501, 558
BsmI GAATGC 2 cut(s) 726, 768
Bso31I GGTCTC 2 cut(s) 404, 646
Bsp120I GGGCCC 2 cut(s) 274, 428
Bsp1286I GDGCHC 3 cut(s) 20, 278, 432
Bsp13I TCCGGA 2 cut(s) 144, 335
Bsp143I GATC 3 cut(s) 60, 363, 510
BspCNI CTCAG 4 cut(s) 298, 466, 628, 790
BspEI TCCGGA 2 cut(s) 144, 335
BspFNI CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
BspPI GGATC 3 cut(s) 55, 371, 505
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 167, 478
BspTNI GGTCTC 2 cut(s) 404, 646
BsrBI CCGCTC 2 cut(s) 323, 434
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 9 cut(s) 124, 241, 303, 384, 415, 541, 674, 683, 715
BssMI GATC 3 cut(s) 60, 363, 510
BssNI GRCGYC 3 cut(s) 168, 420, 479
BssT1I CCWWGG 2 cut(s) 303, 715
Bst2UI CCWGG 3 cut(s) 65, 386, 542
Bst4CI ACNGT 2 cut(s) 268, 804
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 3 cut(s) 168, 420, 479
BstBAI YACGTR 1 cut(s) 758
BstC8I GCNNGC 5 cut(s) 278, 355, 428, 432, 569
BstDEI CTNAG 4 cut(s) 285, 453, 615, 777
BstDSI CCRYGG 2 cut(s) 241, 415
BstENI CCTNNNNNAGG 1 cut(s) 714
BstFNI CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
BstH2I RGCGCY 2 cut(s) 171, 482
BstHHI GCGC 4 cut(s) 170, 302, 350, 481
BstKTI GATC 3 cut(s) 63, 366, 513
BstMAI GTCTC 3 cut(s) 404, 465, 646
BstMBI GATC 3 cut(s) 60, 363, 510
BstMCI CGRYCG 3 cut(s) 73, 106, 214
BstNI CCWGG 3 cut(s) 65, 386, 542
BstPAI GACNNNNGTC 1 cut(s) 72
BstSLI GKGCMC 2 cut(s) 278, 432
BstUI CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
BstV1I GCAGC 2 cut(s) 460, 487
BstZI CGGCCG 1 cut(s) 70
Bsu36I CCTNAGG 1 cut(s) 285
BsuI GTATCC 2 cut(s) 504, 543
BtgI CCRYGG 2 cut(s) 241, 415
Cac8I GCNNGC 5 cut(s) 278, 355, 428, 432, 569
CfoI GCGC 4 cut(s) 170, 302, 350, 481
Cfr10I RCCGGY 1 cut(s) 353
Cfr42I CCGCGG 2 cut(s) 244, 418
CseI GACGC 2 cut(s) 354, 409
Csp6I GTAC 1 cut(s) 219
CviAII CATG 5 cut(s) 49, 94, 112, 262, 442
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 4 cut(s) 285, 453, 615, 777
DinI GGCGCC 2 cut(s) 169, 480
DpnI GATC 3 cut(s) 62, 365, 512
DpnII GATC 3 cut(s) 60, 363, 510
EaeI YGGCCR 3 cut(s) 70, 159, 538
EagI CGGCCG 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 303, 715
Eco24I GRGCYC 3 cut(s) 20, 278, 432
Eco31I GGTCTC 2 cut(s) 404, 646
Eco47I GGWCC 5 cut(s) 545, 608, 629, 701, 749
Eco52I CGGCCG 1 cut(s) 70
Eco53kI GAGCTC 1 cut(s) 18
Eco72I CACGTG 1 cut(s) 758
Eco81I CCTNAGG 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 714
EcoO109I RGGNCCY 4 cut(s) 274, 662, 677, 749
EcoRII CCWGG 3 cut(s) 63, 384, 540
EcoT14I CCWWGG 2 cut(s) 303, 715
EcoT38I GRGCYC 3 cut(s) 20, 278, 432
EgeI GGCGCC 2 cut(s) 169, 480
EheI GGCGCC 2 cut(s) 169, 480
ErhI CCWWGG 2 cut(s) 303, 715
FaeI CATG 5 cut(s) 52, 97, 115, 265, 445
FaiI YATR 6 cut(s) 50, 95, 113, 263, 443, 645
FaqI GGGAC 2 cut(s) 501, 558
FatI CATG 5 cut(s) 48, 93, 111, 261, 441
FauI CCCGC 5 cut(s) 285, 419, 439, 528, 576
FriOI GRGCYC 3 cut(s) 20, 278, 432
FspBI CTAG 1 cut(s) 597
GlaI GCGC 4 cut(s) 169, 301, 349, 480
GsaI CCCAGC 1 cut(s) 394
GsuI CTGGAG 1 cut(s) 14
HaeII RGCGCY 2 cut(s) 171, 482
HgaI GACGC 2 cut(s) 354, 409
HhaI GCGC 4 cut(s) 170, 302, 350, 481
Hin1I GRCGYC 3 cut(s) 168, 420, 479
Hin1II CATG 5 cut(s) 52, 97, 115, 265, 445
Hin6I GCGC 4 cut(s) 168, 300, 348, 479
HinP1I GCGC 4 cut(s) 168, 300, 348, 479
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 3 cut(s) 293, 339, 370
HphI GGTGA 1 cut(s) 520
Hpy166II GTNNAC 2 cut(s) 611, 704
Hpy188I TCNGA 6 cut(s) 86, 344, 456, 486, 636, 780
Hpy188III TCNNGA 4 cut(s) 145, 287, 336, 367
Hpy8I GTNNAC 2 cut(s) 611, 704
Hpy99I CGWCG 4 cut(s) 86, 212, 272, 425
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 268, 804
HpyCH4IV ACGT 2 cut(s) 491, 757
HpyCH4V TGCA 2 cut(s) 448, 640
HpyF3I CTNAG 4 cut(s) 285, 453, 615, 777
HpySE526I ACGT 2 cut(s) 491, 757
Hsp92I GRCGYC 3 cut(s) 168, 420, 479
Hsp92II CATG 5 cut(s) 52, 97, 115, 265, 445
HspAI GCGC 4 cut(s) 168, 300, 348, 479
KasI GGCGCC 2 cut(s) 167, 478
Kpn2I TCCGGA 2 cut(s) 144, 335
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
KspI CCGCGG 2 cut(s) 244, 418
Kzo9I GATC 3 cut(s) 60, 363, 510
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 5 cut(s) 23, 33, 338, 439, 508
Lsp1109I GCAGC 2 cut(s) 460, 487
LweI GCATC 3 cut(s) 15, 435, 627
MaeI CTAG 1 cut(s) 597
MaeII ACGT 2 cut(s) 491, 757
MaeIII GTNAC 3 cut(s) 55, 294, 367
MalI GATC 3 cut(s) 62, 365, 512
MbiI CCGCTC 2 cut(s) 323, 434
MboI GATC 3 cut(s) 60, 363, 510
MboII GAAGA 2 cut(s) 25, 193
MhlI GDGCHC 3 cut(s) 20, 278, 432
Mly113I GGCGCC 2 cut(s) 168, 479
MlyI GAGTC 2 cut(s) 302, 364
MmeI TCCRAC 1 cut(s) 64
MroI TCCGGA 2 cut(s) 144, 335
MroNI GCCGGC 1 cut(s) 353
MslI CAYNNNNRTG 2 cut(s) 53, 260
MspA1I CMGCKG 2 cut(s) 243, 417
Mva1269I GAATGC 2 cut(s) 726, 768
MvaI CCWGG 3 cut(s) 65, 386, 542
MvnI CGCG 6 cut(s) 207, 243, 300, 311, 348, 417
NaeI GCCGGC 1 cut(s) 355
NarI GGCGCC 2 cut(s) 168, 479
NciI CCSGG 9 cut(s) 396, 438, 537, 591, 603, 627, 675, 684, 735
NdeII GATC 3 cut(s) 60, 363, 510
NgoMIV GCCGGC 1 cut(s) 353
NlaIII CATG 5 cut(s) 52, 97, 115, 265, 445
NmeAIII GCCGAG 3 cut(s) 105, 204, 455
NmuCI GTSAC 3 cut(s) 55, 294, 367
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 132, 204, 482
PctI GAATGC 2 cut(s) 726, 768
PdiI GCCGGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 339
PfoI TCCNGGA 1 cut(s) 63
PleI GAGTC 2 cut(s) 301, 364
PluTI GGCGCC 2 cut(s) 171, 482
PmaCI CACGTG 1 cut(s) 758
PmlI CACGTG 1 cut(s) 758
PpsI GAGTC 2 cut(s) 301, 364
Ppu21I YACGTR 1 cut(s) 758
PpuMI RGGWCCY 1 cut(s) 749
PshAI GACNNNNGTC 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 749
Psp6I CCWGG 3 cut(s) 63, 384, 540
PspCI CACGTG 1 cut(s) 758
PspFI CCCAGC 1 cut(s) 390
PspGI CCWGG 3 cut(s) 63, 384, 540
PspOMI GGGCCC 2 cut(s) 274, 428
PspPPI RGGWCCY 1 cut(s) 749
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
RseI CAYNNNNRTG 2 cut(s) 53, 260
SacI GAGCTC 1 cut(s) 20
SacII CCGCGG 2 cut(s) 244, 418
SapI GCTCTTC 1 cut(s) 8
Sau3AI GATC 3 cut(s) 60, 363, 510
SchI GAGTC 2 cut(s) 302, 364
SduI GDGCHC 3 cut(s) 20, 278, 432
SfaNI GCATC 3 cut(s) 15, 435, 627
SfoI GGCGCC 2 cut(s) 169, 480
Sfr303I CCGCGG 2 cut(s) 244, 418
SgrBI CCGCGG 2 cut(s) 244, 418
SinI GGWCC 5 cut(s) 545, 608, 629, 701, 749
SmiMI CAYNNNNRTG 2 cut(s) 53, 260
SspDI GGCGCC 2 cut(s) 167, 478
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 2 cut(s) 303, 715
TaaI ACNGT 2 cut(s) 268, 804
TaiI ACGT 2 cut(s) 494, 760
TaqI TCGA 4 cut(s) 5, 11, 102, 270
TfiI GAWTC 1 cut(s) 339
TseFI GTSAC 3 cut(s) 55, 294, 367
TseI GCWGC 4 cut(s) 448, 500, 793, 796
Tsp45I GTSAC 3 cut(s) 55, 294, 367
TspDTI ATGAA 3 cut(s) 25, 82, 128
TspGWI ACGGA 1 cut(s) 503
VpaK11BI GGWCC 5 cut(s) 545, 608, 629, 701, 749
XagI CCTNNNNNAGG 1 cut(s) 714
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.