Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001710

Physical Location & Seq

Genomic Coordinates Forward (+)

457706 .. 458961

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0005600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATGAAAGGTGCTCATTTCCCTGCAGCTGCTGCTTTTGCCCTATTGGCATTGGCAACCTTCCACCTTGTCTATGCCTTTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCAGTTAACACCACCAAAACTGATTCTGCTGAGGATTTCTTCTTTTCCAGGCGAATGTACGTGGAGCAAATAGCAGGACTGAACACTCTTGGGATATCCCTCGCTCGCATAGACTATGCACCTGGCGGACTAAACCCTCCTCACATCCACCCTCGGGCCACGGAAGTCCTTATGGTCATGGAAGGCACTCTCTACGTTGGCTTCGTCACATCCAATGATAACGACAACCGCCTCTTAAGCAAAGTGTTGTACAAGGGAGATGTGTTTGTCTTCCCATTTGCTCAAATTCACTTCCAGCTCAACATCGGAAAGGTCAAAGCCGTAGCCGTTTCCAGTCTTAGCAGCCAGTTTCCTGGTGTCATCACCATAGCCAATGCAGTGTTCGGGTCCAACCCTCCAATCAACCCTGATGTTCTCGCCAAGGCCTTCCAACTTGACAACAATGTCGTTCAGTATCTCCAGAAACAGTTCTGGTATGACAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

199

Amino Acids

21.91

Weight (kDa)

6.17

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	58 - 188	1.4e-45	Cupin
Cupin_2	PF07883	74 - 146	4.5e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT5G44500 AT5G44500
fragaria_vesca	FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920
malus_domestica	MD04G1002600.v1.1 MD04G1223300.v1.1 MD06G1169400.v1.1 MD14G1174700.v1.1
prunus_persica	Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.6G342400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451231 RchiOBHm_Chr7g0192911
rosa_laevigata	RLG00000004313 RLG00000025677
rosa_multiflora	Rmu_co8453239.1_g000001 Rmu_sc0002040.1_g000055 Rmu_sc0002575.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262550 Rroxscaffold_6G00428690
rosa_rugosa	Rorug02G0632700 Rorug07G0005600 Rorug07G0005700 Rorug07G0005800 Rorug07G0005800 Rorug07G0005800
rosa_samantha	Rh3AG035200 Rh3BG035700 Rh3CG034300 Rh3DG035300 Rh7AG131300 Rh7BG132100 Rh7BG447000 Rh7BG447200 Rh7CG135400 Rh7DG133200
rosa_wichuraiana	Rw3G002600 Rw7G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	554
AciI	CCGC	2 cut(s)	237, 340
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	396
AfaI	GTAC	2 cut(s)	170, 362
AfiI	CCNNNNNNNGG	1 cut(s)	265
AflII	CTTAAG	1 cut(s)	346
AjnI	CCWGG	3 cut(s)	158, 232, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AluBI	AGCT	2 cut(s)	29, 409
AluI	AGCT	2 cut(s)	29, 409
Alw21I	GWGCWC	1 cut(s)	16
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	2 cut(s)	267, 534
ApeKI	GCWGC	4 cut(s)	26, 29, 32, 453
ApoI	RAATTY	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	578
AspS9I	GGNCC	2 cut(s)	267, 498
AsuHPI	GGTGA	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	16
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	16, 19, 38, 465
BceAI	ACGGC	2 cut(s)	416, 422
BciT130I	CCWGG	3 cut(s)	160, 234, 465
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	346
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	4 cut(s)	27, 30, 33, 454
BlsI	GCNGC	4 cut(s)	28, 31, 34, 455
Bme1390I	CCNGG	3 cut(s)	160, 234, 465
Bme18I	GGWCC	1 cut(s)	498
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	267, 498
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	3 cut(s)	160, 234, 465
BpiI	GAAGAC	1 cut(s)	373
BpmI	CTGGAG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	172
BsaJI	CCNNGG	3 cut(s)	263, 270, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	444, 457
BseBI	CCWGG	3 cut(s)	160, 234, 465
BseDI	CCNNGG	3 cut(s)	263, 270, 531
BseGI	GGATG	2 cut(s)	255, 320
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	444, 457
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	4 cut(s)	16, 19, 38, 465
BshFI	GGCC	2 cut(s)	269, 536
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	265
BsnI	GGCC	2 cut(s)	269, 536
BsoBI	CYCGRG	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	237, 340
BspANI	GGCC	2 cut(s)	269, 536
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	499
BspMAI	CTGCAG	1 cut(s)	28
BspPI	GGATC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	444, 457
BssECI	CCNNGG	3 cut(s)	263, 270, 531
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	3 cut(s)	160, 234, 465
Bst4CI	ACNGT	1 cut(s)	579
BstAFI	CTTAAG	1 cut(s)	346
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	2 cut(s)	141, 449
BstDSI	CCRYGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	255, 320
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 38, 47, 348
BstNI	CCWGG	3 cut(s)	160, 234, 465
BstSCI	CCNGG	3 cut(s)	158, 232, 463
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	4 cut(s)	16, 19, 38, 465
BstV2I	GAAGAC	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	269, 536
BtgI	CCRYGG	1 cut(s)	270
BtsCI	GGATG	2 cut(s)	255, 320
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	1 cut(s)	217
CaiI	CAGNNNCTG	1 cut(s)	32
Cfr13I	GGNCC	2 cut(s)	267, 498
Csp6I	GTAC	2 cut(s)	169, 361
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	9 cut(s)	29, 269, 312, 409, 431, 437, 456, 482, 536
CviKI_1	RGCY	9 cut(s)	29, 269, 312, 409, 431, 437, 456, 482, 536
CviQI	GTAC	2 cut(s)	169, 361
DdeI	CTNAG	2 cut(s)	141, 449
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
DrdI	GACNNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	554
EciI	GGCGGA	1 cut(s)	252
Eco130I	CCWWGG	1 cut(s)	531
Eco147I	AGGCCT	1 cut(s)	536
Eco32I	GATATC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	498
Eco88I	CYCGRG	1 cut(s)	264
EcoRII	CCWGG	3 cut(s)	158, 232, 463
EcoRV	GATATC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	1 cut(s)	292
FaiI	YATR	7 cut(s)	75, 221, 228, 284, 290, 479, 588
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	27, 30, 33, 454
FokI	GGATG	2 cut(s)	242, 307
Fsp4HI	GCNGC	4 cut(s)	27, 30, 33, 454
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	4 cut(s)	27, 30, 33, 454
GsuI	CTGGAG	1 cut(s)	554
HaeIII	GGCC	2 cut(s)	269, 536
Hin1II	CATG	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	134
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	419
Hpy188III	TCNNGA	1 cut(s)	571
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	70, 287, 547
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	2 cut(s)	171, 306
HpyCH4V	TGCA	3 cut(s)	26, 230, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 38, 47, 348
HpyF3I	CTNAG	2 cut(s)	141, 449
HpySE526I	ACGT	2 cut(s)	171, 306
Hsp92II	CATG	1 cut(s)	292
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	4 cut(s)	16, 19, 38, 465
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	2 cut(s)	171, 306
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	2 cut(s)	142, 373
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	2 cut(s)	396, 595
MmeI	TCCRAC	2 cut(s)	525, 565
MnlI	CCTC	8 cut(s)	102, 136, 221, 258, 261, 273, 353, 516
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	3 cut(s)	117, 347, 598
MspA1I	CMGCKG	1 cut(s)	29
MspCI	CTTAAG	1 cut(s)	346
MspR9I	CCNGG	3 cut(s)	160, 234, 465
MvaI	CCWGG	3 cut(s)	160, 234, 465
MwoI	GCNNNNNNNGC	4 cut(s)	32, 38, 47, 348
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	28, 31, 34, 455
Ppu21I	YACGTR	1 cut(s)	172
Psp6I	CCWGG	3 cut(s)	158, 232, 463
PspGI	CCWGG	3 cut(s)	158, 232, 463
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	2 cut(s)	267, 498
PstI	CTGCAG	1 cut(s)	28
PstNI	CAGNNNCTG	1 cut(s)	32
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	170, 362
RsaNI	GTAC	2 cut(s)	169, 361
SaqAI	TTAA	3 cut(s)	117, 347, 598
SatI	GCNGC	4 cut(s)	27, 30, 33, 454
Sau3AI	GATC	1 cut(s)	82
Sau96I	GGNCC	2 cut(s)	267, 498
ScrFI	CCNGG	3 cut(s)	160, 234, 465
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	9 cut(s)	13, 31, 62, 69, 174, 235, 309, 411, 426
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	396, 595
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	2 cut(s)	237, 340
SspMI	CTAG	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	3 cut(s)	158, 232, 463
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	2 cut(s)	174, 309
TasI	AATT	2 cut(s)	396, 595
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	3 cut(s)	117, 347, 598
Tru9I	TTAA	3 cut(s)	117, 347, 598
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	4 cut(s)	26, 29, 32, 453
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	1 cut(s)	495
Vha464I	CTTAAG	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	498
XapI	RAATTY	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.