Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001710

Physical Location & Seq

Genomic Coordinates Reverse (-)

49054212 .. 49055421

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGACGTATCCGGCTGCTCCGGTGATCCGTCCCCCGCCGCAGATGTATCCCGGCCAGGGACCACCACCGATGGTGCGTGGCCCGCCGCCGCAGTTTCCTCCTCCCGGTGCCAGGCCCGGCGGTCCACCTCAGCAGTTTCCCGGTCCTCCGATGCAGTATGGGCAGAGACCAATGGGGCCTCCACCGCCCGGGCCTCCGGGTCAGATGATGAGGGGCCCACCACCTCGCCAAGGAATGCCTCCTCCTCCCGGTGTGTTTGGAGGACCTCCACGAGGAATGCCGCCGCCGCCTCAGAACCCTAACCAGCAGCAGCAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.27

Weight (kDa)

11.88

Isoelectric Point (pI)

88.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT5G44500 AT5G44500
fragaria_vesca	FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920
malus_domestica	MD04G1002600.v1.1 MD04G1223300.v1.1 MD06G1169400.v1.1 MD14G1174700.v1.1
prunus_persica	Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.6G342400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451231 RchiOBHm_Chr7g0192911
rosa_laevigata	RLG00000004313 RLG00000025677
rosa_multiflora	Rmu_co8453239.1_g000001 Rmu_sc0002040.1_g000055 Rmu_sc0002575.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262550 Rroxscaffold_6G00428690
rosa_rugosa	Rorug02G0632700 Rorug07G0005600 Rorug07G0005700 Rorug07G0005800 Rorug07G0005800 Rorug07G0005800
rosa_samantha	Rh3AG035200 Rh3BG035700 Rh3CG034300 Rh3DG035300 Rh7AG131300 Rh7BG132100 Rh7BG447000 Rh7BG447200 Rh7CG135400 Rh7DG133200
rosa_wichuraiana	Rw3G002600 Rw7G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	52
AfiI	CCNNNNNNNGG	7 cut(s)	56, 104, 111, 188, 230, 248, 272
AjnI	CCWGG	2 cut(s)	54, 110
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	6 cut(s)	52, 79, 113, 176, 191, 214
ApaI	GGGCCC	1 cut(s)	218
ApeKI	GCWGC	4 cut(s)	14, 307, 310, 313
AsuC2I	CCSGG	8 cut(s)	51, 105, 117, 141, 189, 190, 198, 249
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	4 cut(s)	59, 122, 143, 263
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	56, 112
BciVI	GTATCC	2 cut(s)	18, 57
BcnI	CCSGG	8 cut(s)	51, 105, 117, 141, 189, 190, 198, 249
BcoDI	GTCTC	1 cut(s)	160
BfuI	GTATCC	2 cut(s)	18, 57
Bme18I	GGWCC	4 cut(s)	59, 122, 143, 263
BmeT110I	CYCGRG	1 cut(s)	188
BmiI	GGNNCC	5 cut(s)	60, 109, 177, 215, 216
BmsI	GCATC	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	129
BpuMI	CCSGG	8 cut(s)	51, 105, 117, 141, 189, 190, 198, 249
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	55, 188, 229
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	7 cut(s)	56, 104, 111, 188, 230, 248, 272
BseBI	CCWGG	2 cut(s)	56, 112
BseDI	CCNNGG	3 cut(s)	55, 188, 229
BseLI	CCNNNNNNNGG	7 cut(s)	56, 104, 111, 188, 230, 248, 272
BseMII	CTCAG	2 cut(s)	143, 305
BseRI	GAGGAG	3 cut(s)	90, 231, 234
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	6 cut(s)	54, 81, 115, 178, 193, 216
BshNI	GGYRCC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	9 cut(s)	11, 20, 51, 105, 117, 141, 189, 197, 249
BslFI	GGGAC	2 cut(s)	15, 72
BslI	CCNNNNNNNGG	7 cut(s)	56, 104, 111, 188, 230, 248, 272
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	2 cut(s)	15, 72
BsmI	GAATGC	2 cut(s)	240, 282
BsnI	GGCC	6 cut(s)	54, 81, 115, 178, 193, 216
Bso31I	GGTCTC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	188
Bsp120I	GGGCCC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	24
BspANI	GGCC	6 cut(s)	54, 81, 115, 178, 193, 216
BspCNI	CTCAG	2 cut(s)	142, 304
BspLI	GGNNCC	5 cut(s)	60, 109, 177, 215, 216
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	107
BspTNI	GGTCTC	1 cut(s)	160
BssECI	CCNNGG	3 cut(s)	55, 188, 229
BssMI	GATC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	270
Bst2UI	CCWGG	2 cut(s)	56, 112
Bst4CI	ACNGT	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	129, 291
BstENI	CCTNNNNNAGG	2 cut(s)	228, 270
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 160, 184, 286, 313
BstNI	CCWGG	2 cut(s)	56, 112
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	319
BsuI	GTATCC	2 cut(s)	18, 57
BsuRI	GGCC	6 cut(s)	54, 81, 115, 178, 193, 216
Cac8I	GCNNGC	1 cut(s)	83
Cfr9I	CCCGGG	1 cut(s)	188
CviJI	RGCY	7 cut(s)	14, 54, 81, 115, 178, 193, 216
CviKI_1	RGCY	7 cut(s)	14, 54, 81, 115, 178, 193, 216
DdeI	CTNAG	2 cut(s)	129, 291
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	218
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	4 cut(s)	59, 122, 143, 263
Eco88I	CYCGRG	1 cut(s)	188
EcoNI	CCTNNNNNAGG	2 cut(s)	228, 270
EcoO109I	RGGNCCY	3 cut(s)	176, 214, 263
EcoRII	CCWGG	2 cut(s)	54, 110
EcoT14I	CCWWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	229
FaiI	YATR	1 cut(s)	159
FaqI	GGGAC	2 cut(s)	15, 72
FauI	CCCGC	2 cut(s)	42, 90
FriOI	GRGCYC	1 cut(s)	218
HaeIII	GGCC	6 cut(s)	54, 81, 115, 178, 193, 216
HapII	CCGG	9 cut(s)	11, 20, 51, 105, 117, 141, 189, 197, 249
HpaII	CCGG	9 cut(s)	11, 20, 51, 105, 117, 141, 189, 197, 249
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	150, 204, 294
Hpy8I	GTNNAC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 160, 184, 286, 313
HpyF3I	CTNAG	2 cut(s)	129, 291
HpySE526I	ACGT	1 cut(s)	5
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	1 cut(s)	141
MaeII	ACGT	1 cut(s)	5
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	218
MspI	CCGG	9 cut(s)	11, 20, 51, 105, 117, 141, 189, 197, 249
Mva1269I	GAATGC	2 cut(s)	240, 282
MvaI	CCWGG	2 cut(s)	56, 112
MwoI	GCNNNNNNNGC	5 cut(s)	82, 160, 184, 286, 313
NciI	CCSGG	8 cut(s)	51, 105, 117, 141, 189, 190, 198, 249
NdeII	GATC	1 cut(s)	24
NlaIV	GGNNCC	5 cut(s)	60, 109, 177, 215, 216
PctI	GAATGC	2 cut(s)	240, 282
PpuMI	RGGWCCY	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	54, 110
PspGI	CCWGG	2 cut(s)	54, 110
PspN4I	GGNNCC	5 cut(s)	60, 109, 177, 215, 216
PspOMI	GGGCCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	4 cut(s)	8, 130, 226, 268
SfaNI	GCATC	1 cut(s)	141
SinI	GGWCC	4 cut(s)	59, 122, 143, 263
SmaI	CCCGGG	1 cut(s)	190
SrfI	GCCCGGGC	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	321
TaiI	ACGT	1 cut(s)	8
TauI	GCSGC	6 cut(s)	40, 88, 91, 283, 286, 289
TseI	GCWGC	4 cut(s)	14, 307, 310, 313
TspGWI	ACGGA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	188
VpaK11BI	GGWCC	4 cut(s)	59, 122, 143, 263
XagI	CCTNNNNNAGG	2 cut(s)	228, 270
XmaI	CCCGGG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.