Rroxscaffold_3G00262550

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001710
Physical Location & Seq
Forward (+)
56568274 .. 56568870
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262550.1

Sequence Viewer

Length: 597 bp
ATGACCGTCGAGGGTCCGCCTCCTCAAGAAGAGTCCAGAGCCAAAGCCTCCAGCGCCGCCGCCATGGCCGGGCCTGGAATCGGCCGCGGCGCCGGACGGGGCGTGGTGGCGCCACTCGCGCAGGCTCAGCCGGGTCTCTCCGGTCCGGTTCGCGGTGTCGGTGGGCCTGCTCCGGGAATGATGCAGCCTCAGATTTCTCGCCCGCCGATGCCCAATCTGTCTGCTCCGCCGATGAACTATCCGTCTGCGCCGGTGCTCAGGCCACCTGGCCAGATGGCTGGATATCCACCAGGGCAGGGGCCGCCGCAGATGGCTAGGGGACCACCGCCTTCAATGCCTCCTCCACAGTTTACTCGGCCCGGCGGTCCACCTCAGTTTCCAGGCCCTCCACCAATGCAGTTTGCTCAGAGACCAATGGGGCCACCTGGCCAGATGATGAGGGGTCCACCGCCTCCGCCGCGGCCTGGAATGCAAGGTCCACCGCCTCGTCCTGGGATGCCTCCTCCACCTGGTGGTGTTCCTTTGTATGGACAGCCTCGTGGCATGCCACCTCCACCCAACTCTCAGAACCAGCAACAAAATCAGCAGCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

198

Amino Acids

20.22

Weight (kDa)

11.94

Isoelectric Point (pI)

76.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 89, 109
AccB7I CCANNNNNTGG 1 cut(s) 512
AccII CGCG 4 cut(s) 87, 119, 153, 460
AcoI YGGCCR 4 cut(s) 66, 82, 268, 427
AcyI GRCGYC 2 cut(s) 90, 110
AdeI CACNNNGTG 1 cut(s) 512
AgsI TTSAA 1 cut(s) 333
AjnI CCWGG 8 cut(s) 73, 265, 289, 379, 424, 463, 490, 508
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 2 cut(s) 140, 403
ApeKI GCWGC 2 cut(s) 184, 586
AspLEI GCGC 5 cut(s) 56, 92, 112, 121, 250
AsuC2I CCSGG 4 cut(s) 70, 132, 174, 360
AvaII GGWCC 6 cut(s) 14, 143, 320, 365, 443, 476
BalI TGGCCA 2 cut(s) 270, 429
BanI GGYRCC 2 cut(s) 89, 109
BauI CACGAG 1 cut(s) 537
Bbv12I GWGCWC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 268, 304
BciT130I CCWGG 8 cut(s) 75, 267, 291, 381, 426, 465, 492, 510
BcnI CCSGG 4 cut(s) 70, 132, 174, 360
BcoDI GTCTC 2 cut(s) 140, 403
BfaI CTAG 1 cut(s) 315
BfoI RGCGCY 3 cut(s) 57, 93, 113
BglI GCCNNNNNGGC 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 126
Bme18I GGWCC 6 cut(s) 14, 143, 320, 365, 443, 476
BmiI GGNNCC 7 cut(s) 15, 91, 111, 300, 321, 420, 444
BmsI GCATC 3 cut(s) 171, 198, 486
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 257
Bpu1102I GCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 9
BpuMI CCSGG 4 cut(s) 70, 132, 174, 360
BsaHI GRCGYC 2 cut(s) 90, 110
BsaI GGTCTC 2 cut(s) 140, 403
BsaJI CCNNGG 5 cut(s) 63, 85, 290, 458, 491
BsaWI WCCGGW 2 cut(s) 140, 145
Bse118I RCCGGY 1 cut(s) 250
BseBI CCWGG 8 cut(s) 75, 267, 291, 381, 426, 465, 492, 510
BseDI CCNNGG 5 cut(s) 63, 85, 290, 458, 491
BseGI GGATG 1 cut(s) 501
BseMII CTCAG 6 cut(s) 140, 203, 271, 386, 419, 578
BseRI GAGGAG 3 cut(s) 12, 330, 492
BseX3I CGGCCG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 4 cut(s) 87, 119, 153, 460
Bsh1285I CGRYCG 1 cut(s) 85
BshNI GGYRCC 2 cut(s) 89, 109
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 258
BsiSI CCGG 8 cut(s) 69, 93, 131, 141, 146, 173, 251, 360
BslFI GGGAC 1 cut(s) 333
BsmAI GTCTC 2 cut(s) 140, 403
BsmFI GGGAC 1 cut(s) 333
BsmI GAATGC 1 cut(s) 474
Bso31I GGTCTC 2 cut(s) 140, 403
Bsp1286I GDGCHC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 126
Bsp19I CCATGG 1 cut(s) 63
BspCNI CTCAG 6 cut(s) 139, 202, 270, 385, 418, 577
BspFNI CGCG 4 cut(s) 87, 119, 153, 460
BspLI GGNNCC 7 cut(s) 15, 91, 111, 300, 321, 420, 444
BspT107I GGYRCC 2 cut(s) 89, 109
BspTNI GGTCTC 2 cut(s) 140, 403
BsrFI RCCGGY 1 cut(s) 250
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 5 cut(s) 63, 85, 290, 458, 491
BssNI GRCGYC 2 cut(s) 90, 110
BssSI CACGAG 1 cut(s) 537
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 537
Bst2UI CCWGG 8 cut(s) 75, 267, 291, 381, 426, 465, 492, 510
Bst4CI ACNGT 3 cut(s) 7, 348, 594
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 2 cut(s) 90, 110
BstC8I GCNNGC 4 cut(s) 123, 168, 203, 545
BstDEI CTNAG 6 cut(s) 126, 189, 257, 372, 405, 564
BstDSI CCRYGG 3 cut(s) 63, 85, 458
BstF5I GGATG 1 cut(s) 501
BstFNI CGCG 4 cut(s) 87, 119, 153, 460
BstH2I RGCGCY 3 cut(s) 57, 93, 113
BstHHI GCGC 5 cut(s) 56, 92, 112, 121, 250
BstMAI GTCTC 2 cut(s) 140, 403
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 9 cut(s) 53, 65, 116, 118, 127, 301, 334, 457, 469
BstNI CCWGG 8 cut(s) 75, 267, 291, 381, 426, 465, 492, 510
BstNSI RCATGY 1 cut(s) 547
BstUI CGCG 4 cut(s) 87, 119, 153, 460
BstV1I GCAGC 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 278
BstZI CGGCCG 1 cut(s) 82
BtgI CCRYGG 3 cut(s) 63, 85, 458
BtsCI GGATG 1 cut(s) 501
Cac8I GCNNGC 4 cut(s) 123, 168, 203, 545
CfoI GCGC 5 cut(s) 56, 92, 112, 121, 250
Cfr10I RCCGGY 1 cut(s) 250
Cfr42I CCGCGG 2 cut(s) 88, 461
CpoI CGGWCCG 1 cut(s) 143
CsiI ACCWGGT 1 cut(s) 508
CspI CGGWCCG 1 cut(s) 143
CviAII CATG 2 cut(s) 64, 544
DdeI CTNAG 6 cut(s) 126, 189, 257, 372, 405, 564
DinI GGCGCC 2 cut(s) 91, 111
DraIII CACNNNGTG 1 cut(s) 512
EaeI YGGCCR 4 cut(s) 66, 82, 268, 427
EagI CGGCCG 1 cut(s) 82
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EciI GGCGGA 3 cut(s) 6, 216, 444
EclXI CGGCCG 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 63
Eco31I GGTCTC 2 cut(s) 140, 403
Eco32I GATATC 1 cut(s) 284
Eco47I GGWCC 6 cut(s) 14, 143, 320, 365, 443, 476
Eco52I CGGCCG 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 383
EcoRII CCWGG 8 cut(s) 73, 265, 289, 379, 424, 463, 490, 508
EcoRV GATATC 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 63
EgeI GGCGCC 2 cut(s) 91, 111
EheI GGCGCC 2 cut(s) 91, 111
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 2 cut(s) 67, 547
FaiI YATR 3 cut(s) 65, 528, 545
FaqI GGGAC 1 cut(s) 333
FatI CATG 2 cut(s) 63, 543
FauI CCCGC 1 cut(s) 210
FokI GGATG 1 cut(s) 508
FspBI CTAG 1 cut(s) 315
GlaI GCGC 5 cut(s) 55, 91, 111, 120, 249
GsuI CTGGAG 1 cut(s) 34
HaeII RGCGCY 3 cut(s) 57, 93, 113
HapII CCGG 8 cut(s) 69, 93, 131, 141, 146, 173, 251, 360
HhaI GCGC 5 cut(s) 56, 92, 112, 121, 250
Hin1I GRCGYC 2 cut(s) 90, 110
Hin1II CATG 2 cut(s) 67, 547
Hin6I GCGC 5 cut(s) 54, 90, 110, 119, 248
HinP1I GCGC 5 cut(s) 54, 90, 110, 119, 248
HinfI GANTC 2 cut(s) 32, 78
HpaII CCGG 8 cut(s) 69, 93, 131, 141, 146, 173, 251, 360
Hpy166II GTNNAC 4 cut(s) 351, 368, 446, 479
Hpy188I TCNGA 3 cut(s) 192, 408, 567
Hpy188III TCNNGA 2 cut(s) 26, 36
Hpy8I GTNNAC 4 cut(s) 351, 368, 446, 479
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 339
HpyCH4III ACNGT 3 cut(s) 7, 348, 594
HpyCH4V TGCA 3 cut(s) 184, 397, 472
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 65, 116, 118, 127, 301, 334, 457, 469
HpyF3I CTNAG 6 cut(s) 126, 189, 257, 372, 405, 564
Hsp92I GRCGYC 2 cut(s) 90, 110
Hsp92II CATG 2 cut(s) 67, 547
HspAI GCGC 5 cut(s) 54, 90, 110, 119, 248
KasI GGCGCC 2 cut(s) 89, 109
KspI CCGCGG 2 cut(s) 88, 461
LmnI GCTCC 2 cut(s) 175, 229
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 3 cut(s) 171, 198, 486
MabI ACCWGGT 1 cut(s) 508
MaeI CTAG 1 cut(s) 315
MboII GAAGA 1 cut(s) 41
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 2 cut(s) 270, 429
MluNI TGGCCA 2 cut(s) 270, 429
Mly113I GGCGCC 2 cut(s) 90, 110
MlyI GAGTC 1 cut(s) 41
Mox20I TGGCCA 2 cut(s) 270, 429
MscI TGGCCA 2 cut(s) 270, 429
Msp20I TGGCCA 2 cut(s) 270, 429
MspA1I CMGCKG 2 cut(s) 87, 460
MspI CCGG 8 cut(s) 69, 93, 131, 141, 146, 173, 251, 360
Mva1269I GAATGC 1 cut(s) 474
MvaI CCWGG 8 cut(s) 75, 267, 291, 381, 426, 465, 492, 510
MvnI CGCG 4 cut(s) 87, 119, 153, 460
MwoI GCNNNNNNNGC 9 cut(s) 53, 65, 116, 118, 127, 301, 334, 457, 469
NarI GGCGCC 2 cut(s) 90, 110
NciI CCSGG 4 cut(s) 70, 132, 174, 360
NcoI CCATGG 1 cut(s) 63
NlaIII CATG 2 cut(s) 67, 547
NlaIV GGNNCC 7 cut(s) 15, 91, 111, 300, 321, 420, 444
NmeAIII GCCGAG 1 cut(s) 334
NspI RCATGY 1 cut(s) 547
PaeI GCATGC 1 cut(s) 547
PctI GAATGC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 78
PflMI CCANNNNNTGG 1 cut(s) 512
PfoI TCCNGGA 1 cut(s) 172
PleI GAGTC 1 cut(s) 40
PluTI GGCGCC 2 cut(s) 93, 113
PpsI GAGTC 1 cut(s) 40
Psp6I CCWGG 8 cut(s) 73, 265, 289, 379, 424, 463, 490, 508
PspGI CCWGG 8 cut(s) 73, 265, 289, 379, 424, 463, 490, 508
PspN4I GGNNCC 7 cut(s) 15, 91, 111, 300, 321, 420, 444
Rsr2I CGGWCCG 1 cut(s) 143
RsrII CGGWCCG 1 cut(s) 143
SacII CCGCGG 2 cut(s) 88, 461
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 1 cut(s) 258
SetI ASST 6 cut(s) 268, 373, 427, 478, 511, 553
SexAI ACCWGGT 1 cut(s) 508
SfaNI GCATC 3 cut(s) 171, 198, 486
SfoI GGCGCC 2 cut(s) 91, 111
Sfr303I CCGCGG 2 cut(s) 88, 461
SgrAI CRCCGGYG 1 cut(s) 250
SgrBI CCGCGG 2 cut(s) 88, 461
SinI GGWCC 6 cut(s) 14, 143, 320, 365, 443, 476
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
SphI GCATGC 1 cut(s) 547
SspDI GGCGCC 2 cut(s) 89, 109
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 3 cut(s) 7, 348, 594
TaqI TCGA 1 cut(s) 9
TauI GCSGC 8 cut(s) 59, 62, 87, 90, 304, 307, 460, 463
TfiI GAWTC 1 cut(s) 78
TseI GCWGC 2 cut(s) 184, 586
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 231
Van91I CCANNNNNTGG 1 cut(s) 512
VpaK11BI GGWCC 6 cut(s) 14, 143, 320, 365, 443, 476
XceI RCATGY 1 cut(s) 547
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.