Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001710

Physical Location & Seq

Genomic Coordinates Forward (+)

52145542 .. 52149140

Gene Structure 3599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG447000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATCTCAATCCCTCGACTCATCTCATCTCCCTCTCTCTCTTCCCCTCACTCATCTTATTCGTTGTCTCGCCCTAACCTCTCGGCGCCTCCGATGACGTATCCGGCTGCTCCGGTGATCCGTCCCCCGCCGCAGATGTATCCCGGCCAGGGACCACCGCCGATGGTGCGTGGCCCGCCGCCGCAGTTTCCTCCTCCCGGTGCCAGGCCCGGCGGCCCACCTCAGCAGTTTCCCGGTCCTCCGATGCAGTATGGGCAGAGACCAATGGGGCCTCCACCGCCCGGGCCTCCGGGGCAGATGATGAGGGGTCCACCACCTCGCCAAGGAATGCCGCCTCCTCTCGGTGTGTTTGGAGGACCTCCACGGGGAATGCCGCCGCCGCCTCAGAACCCCAACCAGCAGCAACAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

137

Amino Acids

14.42

Weight (kDa)

11.91

Isoelectric Point (pI)

84.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT5G44500 AT5G44500
fragaria_vesca	FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920
malus_domestica	MD04G1002600.v1.1 MD04G1223300.v1.1 MD06G1169400.v1.1 MD14G1174700.v1.1
prunus_persica	Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.6G342400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451231 RchiOBHm_Chr7g0192911
rosa_laevigata	RLG00000004313 RLG00000025677
rosa_multiflora	Rmu_co8453239.1_g000001 Rmu_sc0002040.1_g000055 Rmu_sc0002575.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262550 Rroxscaffold_6G00428690
rosa_rugosa	Rorug02G0632700 Rorug07G0005600 Rorug07G0005700 Rorug07G0005800 Rorug07G0005800 Rorug07G0005800
rosa_samantha	Rh3AG035200 Rh3BG035700 Rh3CG034300 Rh3DG035300 Rh7AG131300 Rh7BG132100 Rh7BG447000 Rh7BG447200 Rh7CG135400 Rh7DG133200
rosa_wichuraiana	Rw3G002600 Rw7G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	85, 200
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	86
AfiI	CCNNNNNNNGG	7 cut(s)	149, 197, 204, 281, 323, 341, 365
AjnI	CCWGG	2 cut(s)	147, 203
Alw26I	GTCTC	2 cut(s)	72, 253
AlwI	GGATC	1 cut(s)	112
Ama87I	CYCGRG	1 cut(s)	281
AoxI	GGCC	6 cut(s)	145, 172, 206, 214, 269, 284
ApeKI	GCWGC	2 cut(s)	107, 400
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	9 cut(s)	152, 173, 207, 215, 236, 269, 284, 308, 356
AsuC2I	CCSGG	7 cut(s)	144, 198, 210, 234, 282, 283, 291
AsuHPI	GGTGA	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	281
AvaII	GGWCC	4 cut(s)	152, 236, 308, 356
BanI	GGYRCC	2 cut(s)	85, 200
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	94
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	2 cut(s)	149, 205
BciVI	GTATCC	2 cut(s)	111, 150
BcnI	CCSGG	7 cut(s)	144, 198, 210, 234, 282, 283, 291
BcoDI	GTCTC	2 cut(s)	72, 253
BfoI	RGCGCY	1 cut(s)	89
BfuI	GTATCC	2 cut(s)	111, 150
BglI	GCCNNNNNGGC	1 cut(s)	292
Bme1390I	CCNGG	9 cut(s)	144, 149, 198, 205, 210, 234, 282, 283, 291
Bme18I	GGWCC	4 cut(s)	152, 236, 308, 356
BmeT110I	CYCGRG	1 cut(s)	281
BmgT120I	GGNCC	9 cut(s)	152, 173, 207, 215, 236, 269, 284, 308, 356
BmiI	GGNNCC	5 cut(s)	87, 153, 202, 270, 309
BmrFI	CCNGG	9 cut(s)	144, 149, 198, 205, 210, 234, 282, 283, 291
BmsI	GCATC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	222
BpuMI	CCSGG	7 cut(s)	144, 198, 210, 234, 282, 283, 291
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	5 cut(s)	148, 281, 290, 322, 362
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	7 cut(s)	149, 197, 204, 281, 323, 341, 365
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	149, 205
BseDI	CCNNGG	5 cut(s)	148, 281, 290, 322, 362
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	7 cut(s)	149, 197, 204, 281, 323, 341, 365
BseMII	CTCAG	2 cut(s)	236, 398
BseRI	GAGGAG	2 cut(s)	183, 327
BseXI	GCAGC	1 cut(s)	94
BshFI	GGCC	6 cut(s)	147, 174, 208, 216, 271, 286
BshNI	GGYRCC	2 cut(s)	85, 200
BsiHKCI	CYCGRG	1 cut(s)	281
BsiSI	CCGG	8 cut(s)	104, 113, 144, 198, 210, 234, 282, 290
BslFI	GGGAC	2 cut(s)	108, 165
BslI	CCNNNNNNNGG	7 cut(s)	149, 197, 204, 281, 323, 341, 365
BsmAI	GTCTC	2 cut(s)	72, 253
BsmFI	GGGAC	2 cut(s)	108, 165
BsmI	GAATGC	2 cut(s)	333, 375
BsnI	GGCC	6 cut(s)	147, 174, 208, 216, 271, 286
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	281
Bsp143I	GATC	2 cut(s)	3, 117
BspANI	GGCC	6 cut(s)	147, 174, 208, 216, 271, 286
BspCNI	CTCAG	2 cut(s)	235, 397
BspLI	GGNNCC	5 cut(s)	87, 153, 202, 270, 309
BspPI	GGATC	1 cut(s)	112
BspT107I	GGYRCC	2 cut(s)	85, 200
BspTNI	GGTCTC	1 cut(s)	253
BssECI	CCNNGG	5 cut(s)	148, 281, 290, 322, 362
BssMI	GATC	2 cut(s)	3, 117
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	149, 205
Bst4CI	ACNGT	1 cut(s)	411
Bst6I	CTCTTC	1 cut(s)	46
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	222, 384
BstDSI	CCRYGG	1 cut(s)	362
BstENI	CCTNNNNNAGG	1 cut(s)	321
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	6, 120
BstMAI	GTCTC	2 cut(s)	72, 253
BstMBI	GATC	2 cut(s)	3, 117
BstMWI	GCNNNNNNNGC	6 cut(s)	166, 175, 253, 277, 292, 379
BstNI	CCWGG	2 cut(s)	149, 205
BstSCI	CCNGG	9 cut(s)	142, 147, 196, 203, 208, 232, 280, 281, 289
BstV1I	GCAGC	1 cut(s)	94
BsuI	GTATCC	2 cut(s)	111, 150
BsuRI	GGCC	6 cut(s)	147, 174, 208, 216, 271, 286
BtgI	CCRYGG	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	9 cut(s)	152, 173, 207, 215, 236, 269, 284, 308, 356
Cfr9I	CCCGGG	1 cut(s)	281
CviJI	RGCY	7 cut(s)	107, 147, 174, 208, 216, 271, 286
CviKI_1	RGCY	7 cut(s)	107, 147, 174, 208, 216, 271, 286
DdeI	CTNAG	2 cut(s)	222, 384
DinI	GGCGCC	1 cut(s)	87
DpnI	GATC	2 cut(s)	5, 119
DpnII	GATC	2 cut(s)	3, 117
EaeI	YGGCCR	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	4 cut(s)	152, 236, 308, 356
Eco88I	CYCGRG	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	321
EcoO109I	RGGNCCY	2 cut(s)	269, 356
EcoRII	CCWGG	2 cut(s)	147, 203
EcoT14I	CCWWGG	1 cut(s)	322
EgeI	GGCGCC	1 cut(s)	87
EheI	GGCGCC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	322
FaiI	YATR	1 cut(s)	252
FaqI	GGGAC	2 cut(s)	108, 165
FauI	CCCGC	2 cut(s)	135, 183
GlaI	GCGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	6 cut(s)	147, 174, 208, 216, 271, 286
HapII	CCGG	8 cut(s)	104, 113, 144, 198, 210, 234, 282, 290
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	8 cut(s)	104, 113, 144, 198, 210, 234, 282, 290
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	3 cut(s)	93, 243, 387
Hpy8I	GTNNAC	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	411
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	6 cut(s)	166, 175, 253, 277, 292, 379
HpyF3I	CTNAG	2 cut(s)	222, 384
HpySE526I	ACGT	1 cut(s)	98
Hsp92I	GRCGYC	1 cut(s)	86
HspAI	GCGC	1 cut(s)	86
KasI	GGCGCC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	3, 117
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	234
MaeII	ACGT	1 cut(s)	98
MalI	GATC	2 cut(s)	5, 119
MboI	GATC	2 cut(s)	3, 117
MboII	GAAGA	1 cut(s)	33
Mly113I	GGCGCC	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	12
MspI	CCGG	8 cut(s)	104, 113, 144, 198, 210, 234, 282, 290
MspR9I	CCNGG	9 cut(s)	144, 149, 198, 205, 210, 234, 282, 283, 291
Mva1269I	GAATGC	2 cut(s)	333, 375
MvaI	CCWGG	2 cut(s)	149, 205
MwoI	GCNNNNNNNGC	6 cut(s)	166, 175, 253, 277, 292, 379
NarI	GGCGCC	1 cut(s)	86
NciI	CCSGG	7 cut(s)	144, 198, 210, 234, 282, 283, 291
NdeII	GATC	2 cut(s)	3, 117
NlaIV	GGNNCC	5 cut(s)	87, 153, 202, 270, 309
NmeAIII	GCCGAG	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	2 cut(s)	333, 375
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	356
Psp5II	RGGWCCY	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	147, 203
PspGI	CCWGG	2 cut(s)	147, 203
PspN4I	GGNNCC	5 cut(s)	87, 153, 202, 270, 309
PspPI	GGNCC	9 cut(s)	152, 173, 207, 215, 236, 269, 284, 308, 356
PspPPI	RGGWCCY	1 cut(s)	356
Sau3AI	GATC	2 cut(s)	3, 117
Sau96I	GGNCC	9 cut(s)	152, 173, 207, 215, 236, 269, 284, 308, 356
SchI	GAGTC	1 cut(s)	12
ScrFI	CCNGG	9 cut(s)	144, 149, 198, 205, 210, 234, 282, 283, 291
SetI	ASST	5 cut(s)	81, 101, 223, 319, 361
SfaNI	GCATC	1 cut(s)	234
SfoI	GGCGCC	1 cut(s)	87
SinI	GGWCC	4 cut(s)	152, 236, 308, 356
SmaI	CCCGGG	1 cut(s)	283
SrfI	GCCCGGGC	1 cut(s)	283
SspDI	GGCGCC	1 cut(s)	85
StyD4I	CCNGG	9 cut(s)	142, 147, 196, 203, 208, 232, 280, 281, 289
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	411
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	1 cut(s)	16
TauI	GCSGC	8 cut(s)	133, 181, 184, 216, 334, 376, 379, 382
TseI	GCWGC	2 cut(s)	107, 400
TspGWI	ACGGA	1 cut(s)	110
TspMI	CCCGGG	1 cut(s)	281
VpaK11BI	GGWCC	4 cut(s)	152, 236, 308, 356
XagI	CCTNNNNNAGG	1 cut(s)	321
XmaI	CCCGGG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.