RLG00000004313

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001710
Physical Location & Seq
Forward (+)
58239080 .. 58241257
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004313

Sequence Viewer

Length: 843 bp
ATGTCGATGTCGAAGAGCTCCAAGATGCTTCAATTCATCAACTACCGCATGCGGGTCACAATCCAAGACGGACGCCAGCTCGTCGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTCCCGCCGGCGAAAGGCAAGAAGACGAACGACGAACGCGACGACCGCCGCACTCTAGGGATGGTCCTCCTCCGTGGCGAAGAGGTCGTCTCCATGACCGTCGAGGGTCCGCCTCCTCAAGAAGAGTCCAGAGCCAAAGCCTCCAGCGCCGCCGCCATGGCCGGGCCTGGAATCGGCCGCGGCGCCGGACGAGGCGTGGTGGCGCCACTCGCGCAGGCTCAGCCGGGTCTCTCCGGTCCGGTTCGCGGTGTCGGTGGGCCTGCTCCGGGAATGATGCAGCCTCAGATTTCTCGCCCGCCGATGCCCAATCTGTCTGCTCCGCCGATGAATTATCCGTCTGCGCCGGTGCTCAGGCCACCTGGCCAGATGGCTGGATATCCACCAGGGCAGGGCCCGCCGCAGATGGCCAGGGGACCACCGCCGTCGATGCCTCCTCCACAGTTTACTCGGCCTGGCGGTCCACCTCAGTTTCCAGGCCCTCCACCAATGCAGTTTGCTCAGAGACCAATGGGGCCTCCTGGCCAGATGATGAGGGGGCCACCGCCTCCGCCACGGCCTGGAATGCAAGCCTCGTGGCATGCCGCCTCCACCCAACTCTCAGAACCAGCAACAAAATCAGCAGCAACAGTGATTTGGCATGAACAGGTTATGATCGGAGGGTTTCCAAGTGGTGTTGAATGCCTGACATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

281

Amino Acids

29.73

Weight (kDa)

10.4

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 83 6.1e-17 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 352
AccB7I CCANNNNNTGG 1 cut(s) 707
AccII CGCG 4 cut(s) 189, 330, 362, 396
AcoI YGGCCR 5 cut(s) 309, 325, 511, 555, 670
AcyI GRCGYC 3 cut(s) 73, 333, 353
AfiI CCNNNNNNNGG 8 cut(s) 52, 164, 312, 323, 395, 416, 539, 707
AgsI TTSAA 2 cut(s) 32, 827
AjnI CCWGG 8 cut(s) 316, 508, 532, 557, 601, 622, 667, 706
AluBI AGCT 3 cut(s) 18, 79, 151
AluI AGCT 3 cut(s) 18, 79, 151
Alw21I GWGCWC 2 cut(s) 20, 501
Alw26I GTCTC 3 cut(s) 244, 383, 646
ApaI GGGCCC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 427, 770
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 5 cut(s) 299, 335, 355, 364, 493
AsuC2I CCSGG 3 cut(s) 313, 375, 417
AvaII GGWCC 5 cut(s) 214, 257, 386, 563, 608
BaeGI GKGCMC 1 cut(s) 545
BalI TGGCCA 3 cut(s) 513, 557, 672
BanI GGYRCC 2 cut(s) 332, 352
BanII GRGCYC 2 cut(s) 20, 545
BauI CACGAG 1 cut(s) 721
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 20, 501
BbvI GCAGC 2 cut(s) 439, 782
BccI CCATC 3 cut(s) 205, 511, 547
BceAI ACGGC 2 cut(s) 556, 719
BciT130I CCWGG 8 cut(s) 318, 510, 534, 559, 603, 624, 669, 708
BcnI CCSGG 3 cut(s) 313, 375, 417
BcoDI GTCTC 3 cut(s) 244, 383, 646
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 3 cut(s) 300, 336, 356
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 9 cut(s) 199, 300, 303, 328, 331, 428, 548, 732, 771
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 9 cut(s) 200, 301, 304, 329, 332, 429, 549, 733, 772
Bme18I GGWCC 5 cut(s) 214, 257, 386, 563, 608
BmiI GGNNCC 7 cut(s) 258, 334, 354, 543, 564, 663, 687
BmsI GCATC 4 cut(s) 15, 414, 441, 567
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 500
Bpu1102I GCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 252
BpuMI CCSGG 3 cut(s) 313, 375, 417
BsaHI GRCGYC 3 cut(s) 73, 333, 353
BsaI GGTCTC 2 cut(s) 383, 646
BsaJI CCNNGG 7 cut(s) 124, 223, 306, 328, 533, 558, 701
BsaWI WCCGGW 2 cut(s) 383, 388
Bsc4I CCNNNNNNNGG 8 cut(s) 52, 164, 312, 323, 395, 416, 539, 707
Bse118I RCCGGY 2 cut(s) 157, 493
BseBI CCWGG 8 cut(s) 318, 510, 534, 559, 603, 624, 669, 708
BseDI CCNNGG 7 cut(s) 124, 223, 306, 328, 533, 558, 701
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 8 cut(s) 52, 164, 312, 323, 395, 416, 539, 707
BseMII CTCAG 6 cut(s) 383, 446, 514, 629, 662, 762
BseRI GAGGAG 4 cut(s) 152, 209, 255, 573
BseSI GKGCMC 1 cut(s) 545
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 439, 782
Bsh1236I CGCG 4 cut(s) 189, 330, 362, 396
Bsh1285I CGRYCG 3 cut(s) 106, 196, 328
BshNI GGYRCC 2 cut(s) 332, 352
BsiEI CGRYCG 3 cut(s) 106, 196, 328
BsiHKAI GWGCWC 2 cut(s) 20, 501
BsiSI CCGG 8 cut(s) 158, 312, 336, 374, 384, 389, 416, 494
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 8 cut(s) 52, 164, 312, 323, 395, 416, 539, 707
BsmAI GTCTC 3 cut(s) 244, 383, 646
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 576
BsmI GAATGC 2 cut(s) 717, 833
Bso31I GGTCTC 2 cut(s) 383, 646
Bsp120I GGGCCC 1 cut(s) 541
Bsp1286I GDGCHC 3 cut(s) 20, 501, 545
Bsp143I GATC 1 cut(s) 801
Bsp1720I GCTNAGC 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 306
BspCNI CTCAG 6 cut(s) 382, 445, 513, 628, 661, 761
BspFNI CGCG 4 cut(s) 189, 330, 362, 396
BspLI GGNNCC 7 cut(s) 258, 334, 354, 543, 564, 663, 687
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 332, 352
BspTNI GGTCTC 2 cut(s) 383, 646
BsrFI RCCGGY 2 cut(s) 157, 493
BssAI RCCGGY 2 cut(s) 157, 493
BssECI CCNNGG 7 cut(s) 124, 223, 306, 328, 533, 558, 701
BssMI GATC 1 cut(s) 801
BssNI GRCGYC 3 cut(s) 73, 333, 353
BssSI CACGAG 1 cut(s) 721
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 721
Bst2UI CCWGG 8 cut(s) 318, 510, 534, 559, 603, 624, 669, 708
Bst4CI ACNGT 3 cut(s) 250, 591, 778
Bst6I CTCTTC 3 cut(s) 8, 225, 267
BstACI GRCGYC 3 cut(s) 73, 333, 353
BstDEI CTNAG 6 cut(s) 369, 432, 500, 615, 648, 748
BstDSI CCRYGG 4 cut(s) 223, 306, 328, 701
BstF5I GGATG 1 cut(s) 216
BstFNI CGCG 4 cut(s) 189, 330, 362, 396
BstH2I RGCGCY 3 cut(s) 300, 336, 356
BstHHI GCGC 5 cut(s) 299, 335, 355, 364, 493
BstKTI GATC 1 cut(s) 804
BstMAI GTCTC 3 cut(s) 244, 383, 646
BstMBI GATC 1 cut(s) 801
BstMCI CGRYCG 3 cut(s) 106, 196, 328
BstMWI GCNNNNNNNGC 9 cut(s) 195, 296, 308, 359, 361, 370, 544, 577, 712
BstNI CCWGG 8 cut(s) 318, 510, 534, 559, 603, 624, 669, 708
BstNSI RCATGY 2 cut(s) 52, 731
BstSLI GKGCMC 1 cut(s) 545
BstUI CGCG 4 cut(s) 189, 330, 362, 396
BstV1I GCAGC 2 cut(s) 439, 782
BstV2I GAAGAC 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 521
BstZI CGGCCG 1 cut(s) 325
BtgI CCRYGG 4 cut(s) 223, 306, 328, 701
BtsCI GGATG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 783
CfoI GCGC 5 cut(s) 299, 335, 355, 364, 493
Cfr10I RCCGGY 2 cut(s) 157, 493
Cfr42I CCGCGG 1 cut(s) 331
CpoI CGGWCCG 1 cut(s) 386
CseI GACGC 1 cut(s) 81
CspCI CAANNNNNGTGG 2 cut(s) 704, 739
CspI CGGWCCG 1 cut(s) 386
CviAII CATG 7 cut(s) 49, 94, 112, 244, 307, 728, 788
DdeI CTNAG 6 cut(s) 369, 432, 500, 615, 648, 748
DinI GGCGCC 2 cut(s) 334, 354
DpnI GATC 1 cut(s) 803
DpnII GATC 1 cut(s) 801
EaeI YGGCCR 5 cut(s) 309, 325, 511, 555, 670
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 8, 225, 267
EarI CTCTTC 3 cut(s) 8, 225, 267
EciI GGCGGA 3 cut(s) 249, 459, 687
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 20, 545
Eco31I GGTCTC 2 cut(s) 383, 646
Eco32I GATATC 1 cut(s) 527
Eco47I GGWCC 5 cut(s) 214, 257, 386, 563, 608
Eco52I CGGCCG 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 18
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 3 cut(s) 541, 626, 662
EcoRII CCWGG 8 cut(s) 316, 508, 532, 557, 601, 622, 667, 706
EcoRV GATATC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 20, 545
EgeI GGCGCC 2 cut(s) 334, 354
EheI GGCGCC 2 cut(s) 334, 354
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 7 cut(s) 52, 97, 115, 247, 310, 731, 791
FaiI YATR 8 cut(s) 50, 95, 113, 245, 308, 729, 789, 800
FaqI GGGAC 1 cut(s) 576
FatI CATG 7 cut(s) 48, 93, 111, 243, 306, 727, 787
FauI CCCGC 4 cut(s) 45, 162, 453, 552
Fnu4HI GCNGC 9 cut(s) 199, 300, 303, 328, 331, 428, 548, 732, 771
FokI GGATG 1 cut(s) 223
FriOI GRGCYC 2 cut(s) 20, 545
Fsp4HI GCNGC 9 cut(s) 199, 300, 303, 328, 331, 428, 548, 732, 771
FspBI CTAG 1 cut(s) 206
GlaI GCGC 5 cut(s) 298, 334, 354, 363, 492
GluI GCNGC 9 cut(s) 199, 300, 303, 328, 331, 428, 548, 732, 771
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 3 cut(s) 300, 336, 356
HapII CCGG 8 cut(s) 158, 312, 336, 374, 384, 389, 416, 494
HgaI GACGC 1 cut(s) 81
HhaI GCGC 5 cut(s) 299, 335, 355, 364, 493
Hin1I GRCGYC 3 cut(s) 73, 333, 353
Hin1II CATG 7 cut(s) 52, 97, 115, 247, 310, 731, 791
Hin6I GCGC 5 cut(s) 297, 333, 353, 362, 491
HinP1I GCGC 5 cut(s) 297, 333, 353, 362, 491
HinfI GANTC 2 cut(s) 275, 321
HpaII CCGG 8 cut(s) 158, 312, 336, 374, 384, 389, 416, 494
Hpy166II GTNNAC 2 cut(s) 594, 611
Hpy188I TCNGA 4 cut(s) 435, 651, 751, 806
Hpy188III TCNNGA 2 cut(s) 269, 279
Hpy8I GTNNAC 2 cut(s) 594, 611
Hpy99I CGWCG 5 cut(s) 86, 185, 194, 254, 577
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 3 cut(s) 250, 591, 778
HpyCH4V TGCA 3 cut(s) 427, 640, 715
HpyF10VI GCNNNNNNNGC 9 cut(s) 195, 296, 308, 359, 361, 370, 544, 577, 712
HpyF3I CTNAG 6 cut(s) 369, 432, 500, 615, 648, 748
Hsp92I GRCGYC 3 cut(s) 73, 333, 353
Hsp92II CATG 7 cut(s) 52, 97, 115, 247, 310, 731, 791
HspAI GCGC 5 cut(s) 297, 333, 353, 362, 491
KasI GGCGCC 2 cut(s) 332, 352
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
KspI CCGCGG 1 cut(s) 331
Kzo9I GATC 1 cut(s) 801
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 23, 156, 418, 472
Lsp1109I GCAGC 2 cut(s) 439, 782
LweI GCATC 4 cut(s) 15, 414, 441, 567
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 803
MboI GATC 1 cut(s) 801
MboII GAAGA 4 cut(s) 25, 184, 242, 284
MhlI GDGCHC 3 cut(s) 20, 501, 545
MlsI TGGCCA 3 cut(s) 513, 557, 672
MluCI AATT 2 cut(s) 32, 478
MluNI TGGCCA 3 cut(s) 513, 557, 672
Mly113I GGCGCC 2 cut(s) 333, 353
MlyI GAGTC 1 cut(s) 284
Mox20I TGGCCA 3 cut(s) 513, 557, 672
MreI CGCCGGCG 1 cut(s) 157
MroNI GCCGGC 1 cut(s) 157
MscI TGGCCA 3 cut(s) 513, 557, 672
Msp20I TGGCCA 3 cut(s) 513, 557, 672
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 8 cut(s) 158, 312, 336, 374, 384, 389, 416, 494
Mva1269I GAATGC 2 cut(s) 717, 833
MvaI CCWGG 8 cut(s) 318, 510, 534, 559, 603, 624, 669, 708
MvnI CGCG 4 cut(s) 189, 330, 362, 396
MwoI GCNNNNNNNGC 9 cut(s) 195, 296, 308, 359, 361, 370, 544, 577, 712
NaeI GCCGGC 1 cut(s) 159
NarI GGCGCC 2 cut(s) 333, 353
NciI CCSGG 3 cut(s) 313, 375, 417
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 801
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 7 cut(s) 52, 97, 115, 247, 310, 731, 791
NlaIV GGNNCC 7 cut(s) 258, 334, 354, 543, 564, 663, 687
NmeAIII GCCGAG 2 cut(s) 105, 577
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 2 cut(s) 52, 731
PaeI GCATGC 2 cut(s) 52, 731
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 132, 186, 189
PctI GAATGC 2 cut(s) 717, 833
PdiI GCCGGC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 707
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 9 cut(s) 200, 301, 304, 329, 332, 429, 549, 733, 772
PleI GAGTC 1 cut(s) 283
PluTI GGCGCC 2 cut(s) 336, 356
PpsI GAGTC 1 cut(s) 283
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 8 cut(s) 316, 508, 532, 557, 601, 622, 667, 706
PspGI CCWGG 8 cut(s) 316, 508, 532, 557, 601, 622, 667, 706
PspN4I GGNNCC 7 cut(s) 258, 334, 354, 543, 564, 663, 687
PspOMI GGGCCC 1 cut(s) 541
Rsr2I CGGWCCG 1 cut(s) 386
RsrII CGGWCCG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 20
SacII CCGCGG 1 cut(s) 331
SapI GCTCTTC 1 cut(s) 8
SatI GCNGC 9 cut(s) 199, 300, 303, 328, 331, 428, 548, 732, 771
Sau3AI GATC 1 cut(s) 801
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 3 cut(s) 20, 501, 545
SetI ASST 8 cut(s) 20, 81, 120, 153, 237, 511, 616, 798
SfaNI GCATC 4 cut(s) 15, 414, 441, 567
SfoI GGCGCC 2 cut(s) 334, 354
Sfr303I CCGCGG 1 cut(s) 331
SgrAI CRCCGGYG 2 cut(s) 157, 493
SgrBI CCGCGG 1 cut(s) 331
SinI GGWCC 5 cut(s) 214, 257, 386, 563, 608
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
SphI GCATGC 2 cut(s) 52, 731
Sse9I AATT 2 cut(s) 32, 478
SspDI GGCGCC 2 cut(s) 332, 352
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 250, 591, 778
TaqI TCGA 5 cut(s) 5, 11, 102, 252, 575
TasI AATT 2 cut(s) 32, 478
TauI GCSGC 7 cut(s) 201, 302, 305, 330, 333, 550, 734
TfiI GAWTC 1 cut(s) 321
TscAI CASTG 1 cut(s) 783
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 427, 770
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 5 cut(s) 25, 82, 128, 491, 804
TspGWI ACGGA 3 cut(s) 84, 212, 474
TspRI CASTG 1 cut(s) 783
Van91I CCANNNNNTGG 1 cut(s) 707
VpaK11BI GGWCC 5 cut(s) 214, 257, 386, 563, 608
XceI RCATGY 2 cut(s) 52, 731
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.