Rorug02G0632700

Small nuclear ribonucleoprotein-associated protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
74720829 .. 74722247
1419 bp
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UTR
Exon/CDS
Intron
Rorug02G0632700.1

Sequence Viewer

Length: 1419 bp
ATGAGAAAGCACGAGAGGGACTATGGGGTTTCTAGTTCAATTGCAAAGAAGCACAAGACAGACGAGAACCCAAAAGAGGTCCGACCAACACTGCCAAAGTCCAAGCACAAGCATGCAAGAGATTCTGGGGATTCTAGTTCAATCGCAAAGAAGAAGCTGAAAACTGAAGTAGAAGTCTCTTCAAGTGGGGAAGGGAACCCACTGGCATGTCTTCCTCCAGATGTTTCCTTTATGATTCTTGATAAGTTGTTCGAACCCACCGACCATCTTTCTTTCGCTAGGGTTTGCAAAGATTGGTGCTCTATTTCAAGAAACTATAATATTGCAACTCAACGCTGGCACAAGAAGGGCAAGTTGCTTCCCCTTTTCTTGGTAAGTACTGAATCCGAATCAAAAGGAAAGACTACCAACCATGAACTCGAAGCATATAACGTTTCTAGTGGAAAAAGATGTTACGATAATATTCATTTTCCGGTCACTCATGGCAAGAGGTGTTGTGGTTCTAGCCATGGTTGGTTGGCCATATTAGATATAGAAGGCATATGTCTCTCCATAACTCTGGTGCACCCTTTCCAAAAATCAGTGGAAGCCATCAAACTCCCTCTTTTGGATTTCATGACGACCAAGTCGTTGCAGTACTATGACATTAACCACTTAAAGAACACCTACCAAGAATACATTCGAAAGGTTATCTTGTCCTCCGATCCCATCTTGAATCGGGATAATTATGTTGTTGTTGTGCTCTACGGTTATGGTGGTTCAAAGTTGGCTTTCATCAAAGGAGGACAACAAAGATGGACTTATCCCGATAGGCGTCAAAGCTGCCTTAAGGATGCCATATTTTATAGAAACCAAGTTTATGCGGTTGGCGGAGGCGATGGAAATGAAAAAATCATCTCATTTGATGTTAATAGTTGTAATAAACCTTCAAAGCCTCCAAAAGCAAACCAGCGTACGCCTAATAATGTCCTAAAAAAATGTGCTGCTAGTTCATATCTTGTGGAATCAGTCGAGGGAGACCACCTATGGCATGTTAGAAGACTAGTTTCTTATTCAAGGAGAGCCGATAAGTACATTGAGAGGTTTATGGTTTACAAGGTGGCGTTTGAGGACAAAGATGGATCGGTTGTGGAACAAGTAGAGGTACAAAGCATCGGAGACGAGACTCTGTTTGTGGGTGCATCTCATTCAATAGCCGTCCTGGCTTCAAACTTTCCTGGGTGTAAGCCAAATTCCATTTACTATGCCACAGAAGAGCCGTATTGTTTTGGAGATCCGGACCACAAAACCTATCATATATCTAGTCTAGATGATGGAACCATCACAGAATATGAGCAAAACCTACGCCGGCATCCAAGTTTACATTTAGGAATTCCATGTGGAGTTTGGGTTCTACCAATGTTTAAGGGACTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

472

Amino Acids

53.41

Weight (kDa)

8.87

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 69 - 104 1.8e-06 F-box-like
Beta-prop_KIB1-4 PF03478 147 - 425 3e-46 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 625
AccIII TCCGGA 1 cut(s) 1276
AciI CCGC 2 cut(s) 863, 870
AclI AACGTT 1 cut(s) 432
AclWI GGATC 3 cut(s) 698, 1129, 1268
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 2 cut(s) 1231, 1371
AcuI CTGAAG 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 814
AfaI GTAC 5 cut(s) 379, 638, 955, 1073, 1146
AfiI CCNNNNNNNGG 3 cut(s) 76, 370, 607
AflII CTTAAG 1 cut(s) 827
AhlI ACTAGT 1 cut(s) 1042
AjnI CCWGG 2 cut(s) 1200, 1216
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AloI GAACNNNNNNTCC 2 cut(s) 1374, 1406
AluBI AGCT 2 cut(s) 157, 822
AluI AGCT 2 cut(s) 157, 822
Alw21I GWGCWC 3 cut(s) 302, 567, 744
Alw26I GTCTC 5 cut(s) 181, 551, 1011, 1152, 1157
Alw44I GTGCAC 1 cut(s) 563
AlwI GGATC 3 cut(s) 698, 1129, 1268
Aor13HI TCCGGA 1 cut(s) 1276
AoxI GGCC 1 cut(s) 519
ApaLI GTGCAC 1 cut(s) 563
ApeKI GCWGC 2 cut(s) 822, 983
ApoI RAATTY 2 cut(s) 1231, 1371
Asp700I GAANNNNTTC 1 cut(s) 678
AspS9I GGNCC 2 cut(s) 79, 1279
AsuII TTCGAA 2 cut(s) 252, 682
AvaII GGWCC 2 cut(s) 79, 1279
BaeGI GKGCMC 1 cut(s) 567
BalI TGGCCA 1 cut(s) 521
BarI GAAGNNNNNNTAC 2 cut(s) 910, 942
BauI CACGAG 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 203, 1045
Bbv12I GWGCWC 3 cut(s) 302, 567, 744
BbvI GCAGC 2 cut(s) 809, 970
BccI CCATC 8 cut(s) 273, 599, 716, 789, 872, 1112, 1307, 1328
BceAI ACGGC 2 cut(s) 1181, 1243
BciT130I CCWGG 2 cut(s) 1202, 1218
BcoDI GTCTC 5 cut(s) 181, 551, 1011, 1152, 1157
BcuI ACTAGT 1 cut(s) 1042
BfrI CTTAAG 1 cut(s) 827
BglI GCCNNNNNGGC 1 cut(s) 1202
BisI GCNGC 2 cut(s) 823, 984
BlsI GCNGC 2 cut(s) 824, 985
BmcAI AGTACT 2 cut(s) 379, 638
Bme1390I CCNGG 2 cut(s) 1202, 1218
Bme18I GGWCC 2 cut(s) 79, 1279
BmgT120I GGNCC 2 cut(s) 79, 1279
BmiI GGNNCC 2 cut(s) 197, 1318
BmrFI CCNGG 2 cut(s) 1202, 1218
BmsI GCATC 4 cut(s) 823, 1161, 1190, 1360
BpiI GAAGAC 2 cut(s) 203, 1045
BpmI CTGGAG 1 cut(s) 201
Bpu14I TTCGAA 2 cut(s) 252, 682
BsaHI GRCGYC 1 cut(s) 814
BsaI GGTCTC 1 cut(s) 1011
BsaJI CCNNGG 2 cut(s) 508, 1217
BsaWI WCCGGW 2 cut(s) 472, 1276
BsaXI ACNNNNNCTCC 2 cut(s) 1374, 1404
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 370, 607
Bse118I RCCGGY 1 cut(s) 1347
Bse1I ACTGG 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 1276
BseBI CCWGG 2 cut(s) 1202, 1218
BseDI CCNNGG 2 cut(s) 508, 1217
BseGI GGATG 2 cut(s) 838, 1351
BseLI CCNNNNNNNGG 3 cut(s) 76, 370, 607
BseNI ACTGG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 567
BseXI GCAGC 2 cut(s) 809, 970
BshFI GGCC 1 cut(s) 521
BsiHKAI GWGCWC 3 cut(s) 302, 567, 744
BsiSI CCGG 3 cut(s) 473, 1277, 1348
BsiWI CGTACG 1 cut(s) 953
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 76, 370, 607
BsmAI GTCTC 5 cut(s) 181, 551, 1011, 1152, 1157
BsmBI CGTCTC 1 cut(s) 1152
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 1011
Bsp119I TTCGAA 2 cut(s) 252, 682
Bsp1286I GDGCHC 3 cut(s) 302, 567, 744
Bsp13I TCCGGA 1 cut(s) 1276
Bsp143I GATC 3 cut(s) 703, 1121, 1273
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 2 cut(s) 863, 870
BspANI GGCC 1 cut(s) 521
BspEI TCCGGA 1 cut(s) 1276
BspHI TCATGA 1 cut(s) 615
BspLI GGNNCC 2 cut(s) 197, 1318
BspPI GGATC 3 cut(s) 698, 1129, 1268
BspQI GCTCTTC 1 cut(s) 1248
BspT104I TTCGAA 2 cut(s) 252, 682
BspTI CTTAAG 1 cut(s) 827
BspTNI GGTCTC 1 cut(s) 1011
BsrFI RCCGGY 1 cut(s) 1347
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 1 cut(s) 1347
BssECI CCNNGG 2 cut(s) 508, 1217
BssMI GATC 3 cut(s) 703, 1121, 1273
BssNI GRCGYC 1 cut(s) 814
BssSI CACGAG 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 508
Bst2BI CACGAG 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 1202, 1218
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 2 cut(s) 184, 1248
BstACI GRCGYC 1 cut(s) 814
BstAFI CTTAAG 1 cut(s) 827
BstBI TTCGAA 2 cut(s) 252, 682
BstC8I GCNNGC 3 cut(s) 114, 338, 1349
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 838, 1351
BstKTI GATC 3 cut(s) 706, 1124, 1276
BstMAI GTCTC 5 cut(s) 181, 551, 1011, 1152, 1157
BstMBI GATC 3 cut(s) 703, 1121, 1273
BstMWI GCNNNNNNNGC 1 cut(s) 1202
BstNI CCWGG 2 cut(s) 1202, 1218
BstNSI RCATGY 3 cut(s) 116, 210, 1034
BstSCI CCNGG 2 cut(s) 1200, 1216
BstSLI GKGCMC 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 809, 970
BstV2I GAAGAC 2 cut(s) 203, 1045
BstX2I RGATCY 1 cut(s) 1273
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 1273
BsuRI GGCC 1 cut(s) 521
BtgI CCRYGG 1 cut(s) 508
BtgZI GCGATG 1 cut(s) 891
BtsCI GGATG 2 cut(s) 838, 1351
BtsI GCAGTG 1 cut(s) 89
BtsIMutI CAGTG 3 cut(s) 89, 200, 588
Cac8I GCNNGC 3 cut(s) 114, 338, 1349
CciI TCATGA 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 1347
Cfr13I GGNCC 2 cut(s) 79, 1279
CseI GACGC 1 cut(s) 803
Csp6I GTAC 5 cut(s) 378, 637, 954, 1072, 1145
CviAII CATG 8 cut(s) 113, 207, 413, 482, 509, 616, 1031, 1377
CviQI GTAC 5 cut(s) 378, 637, 954, 1072, 1145
DpnI GATC 3 cut(s) 705, 1123, 1275
DpnII GATC 3 cut(s) 703, 1121, 1273
DrdI GACNNNNNNGTC 1 cut(s) 625
DseDI GACNNNNNNGTC 1 cut(s) 625
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 2 cut(s) 184, 1248
EarI CTCTTC 2 cut(s) 184, 1248
EciI GGCGGA 1 cut(s) 885
Eco130I CCWWGG 1 cut(s) 508
Eco31I GGTCTC 1 cut(s) 1011
Eco47I GGWCC 2 cut(s) 79, 1279
Eco57I CTGAAG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 1371
EcoRII CCWGG 2 cut(s) 1200, 1216
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
Esp3I CGTCTC 1 cut(s) 1152
FaeI CATG 8 cut(s) 116, 210, 416, 485, 512, 619, 1034, 1380
FalI AAGNNNNNCTT 4 cut(s) 677, 709, 784, 816
FaqI GGGAC 1 cut(s) 32
FatI CATG 8 cut(s) 112, 206, 412, 481, 508, 615, 1030, 1376
FauNDI CATATG 1 cut(s) 542
Fnu4HI GCNGC 2 cut(s) 823, 984
FokI GGATG 2 cut(s) 845, 1338
Fsp4HI GCNGC 2 cut(s) 823, 984
GluI GCNGC 2 cut(s) 823, 984
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 521
HapII CCGG 3 cut(s) 473, 1277, 1348
HgaI GACGC 1 cut(s) 803
Hin1I GRCGYC 1 cut(s) 814
Hin1II CATG 8 cut(s) 116, 210, 416, 485, 512, 619, 1034, 1380
HinfI GANTC 8 cut(s) 122, 131, 235, 383, 389, 715, 1004, 1165
HpaII CCGG 3 cut(s) 473, 1277, 1348
Hpy166II GTNNAC 3 cut(s) 565, 1093, 1361
Hpy188I TCNGA 4 cut(s) 83, 388, 703, 1157
Hpy188III TCNNGA 9 cut(s) 218, 239, 309, 616, 712, 719, 806, 1277, 1307
Hpy8I GTNNAC 3 cut(s) 565, 1093, 1361
HpyAV CCTTC 4 cut(s) 185, 340, 530, 936
HpyCH4III ACNGT 1 cut(s) 749
HpyCH4IV ACGT 1 cut(s) 432
HpyCH4V TGCA 7 cut(s) 44, 116, 288, 326, 565, 634, 1181
HpyF10VI GCNNNNNNNGC 1 cut(s) 1202
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 814
Hsp92II CATG 8 cut(s) 116, 210, 416, 485, 512, 619, 1034, 1380
Kpn2I TCCGGA 1 cut(s) 1276
KroI GCCGGC 1 cut(s) 1347
KroNI GCCGGC 1 cut(s) 1349
Kzo9I GATC 3 cut(s) 703, 1121, 1273
LguI GCTCTTC 1 cut(s) 1248
Lsp1109I GCAGC 2 cut(s) 809, 970
LweI GCATC 4 cut(s) 823, 1161, 1190, 1360
MaeII ACGT 1 cut(s) 432
MaeIII GTNAC 2 cut(s) 452, 475
MalI GATC 3 cut(s) 705, 1123, 1275
MboI GATC 3 cut(s) 703, 1121, 1273
MboII GAAGA 5 cut(s) 163, 171, 203, 1050, 1265
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 1273
MhlI GDGCHC 3 cut(s) 302, 567, 744
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 4 cut(s) 39, 724, 1231, 1371
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 1 cut(s) 1159
MmeI TCCRAC 1 cut(s) 106
Mox20I TGGCCA 1 cut(s) 521
MroI TCCGGA 1 cut(s) 1276
MroNI GCCGGC 1 cut(s) 1347
MroXI GAANNNNTTC 1 cut(s) 678
MscI TGGCCA 1 cut(s) 521
MseI TTAA 5 cut(s) 648, 656, 828, 909, 1404
MslI CAYNNNNRTG 2 cut(s) 111, 205
Msp20I TGGCCA 1 cut(s) 521
MspCI CTTAAG 1 cut(s) 827
MspI CCGG 3 cut(s) 473, 1277, 1348
MspR9I CCNGG 2 cut(s) 1202, 1218
MunI CAATTG 1 cut(s) 39
MvaI CCWGG 2 cut(s) 1202, 1218
MwoI GCNNNNNNNGC 1 cut(s) 1202
NaeI GCCGGC 1 cut(s) 1349
NcoI CCATGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 542
NdeII GATC 3 cut(s) 703, 1121, 1273
NgoMIV GCCGGC 1 cut(s) 1347
NlaIII CATG 8 cut(s) 116, 210, 416, 485, 512, 619, 1034, 1380
NlaIV GGNNCC 2 cut(s) 197, 1318
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 3 cut(s) 116, 210, 1034
NspV TTCGAA 2 cut(s) 252, 682
PaeI GCATGC 1 cut(s) 116
PagI TCATGA 1 cut(s) 615
PciSI GCTCTTC 1 cut(s) 1248
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 626
PdiI GCCGGC 1 cut(s) 1349
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 7 cut(s) 122, 131, 235, 383, 389, 715, 1004
Pfl23II CGTACG 1 cut(s) 953
PflFI GACNNNGTC 1 cut(s) 625
PkrI GCNGC 2 cut(s) 824, 985
PleI GAGTC 1 cut(s) 1159
PpsI GAGTC 1 cut(s) 1159
Psp1406I AACGTT 1 cut(s) 432
Psp6I CCWGG 2 cut(s) 1200, 1216
PspGI CCWGG 2 cut(s) 1200, 1216
PspLI CGTACG 1 cut(s) 953
PspN4I GGNNCC 2 cut(s) 197, 1318
PspPI GGNCC 2 cut(s) 79, 1279
PsuI RGATCY 1 cut(s) 1273
PsyI GACNNNGTC 1 cut(s) 625
RsaI GTAC 5 cut(s) 379, 638, 955, 1073, 1146
RsaNI GTAC 5 cut(s) 378, 637, 954, 1072, 1145
RseI CAYNNNNRTG 2 cut(s) 111, 205
SapI GCTCTTC 1 cut(s) 1248
SaqAI TTAA 5 cut(s) 648, 656, 828, 909, 1404
SatI GCNGC 2 cut(s) 823, 984
Sau3AI GATC 3 cut(s) 703, 1121, 1273
Sau96I GGNCC 2 cut(s) 79, 1279
ScaI AGTACT 2 cut(s) 379, 638
SchI GAGTC 1 cut(s) 1159
ScrFI CCNGG 2 cut(s) 1202, 1218
SduI GDGCHC 3 cut(s) 302, 567, 744
SfaNI GCATC 4 cut(s) 823, 1161, 1190, 1360
SfuI TTCGAA 2 cut(s) 252, 682
SinI GGWCC 2 cut(s) 79, 1279
SmiMI CAYNNNNRTG 2 cut(s) 111, 205
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
SpeI ACTAGT 1 cut(s) 1042
SphI GCATGC 1 cut(s) 116
Sse9I AATT 4 cut(s) 39, 724, 1231, 1371
SsiI CCGC 2 cut(s) 863, 870
SspI AATATT 2 cut(s) 322, 463
StyD4I CCNGG 2 cut(s) 1200, 1216
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 1 cut(s) 749
TaiI ACGT 1 cut(s) 435
TaqI TCGA 4 cut(s) 252, 420, 682, 1011
TasI AATT 4 cut(s) 39, 724, 1231, 1371
TatI WGTACW 3 cut(s) 377, 636, 1071
TfiI GAWTC 7 cut(s) 122, 131, 235, 383, 389, 715, 1004
Tru1I TTAA 5 cut(s) 648, 656, 828, 909, 1404
Tru9I TTAA 5 cut(s) 648, 656, 828, 909, 1404
TscAI CASTG 3 cut(s) 96, 207, 588
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 822, 983
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 6 cut(s) 429, 455, 604, 763, 900, 981
TspRI CASTG 3 cut(s) 96, 207, 588
Tth111I GACNNNGTC 1 cut(s) 625
Vha464I CTTAAG 1 cut(s) 827
VneI GTGCAC 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 79, 1279
XapI RAATTY 2 cut(s) 1231, 1371
XbaI TCTAGA 1 cut(s) 1306
XceI RCATGY 3 cut(s) 116, 210, 1034
XcmI CCANNNNNNNNNTGG 1 cut(s) 1383
XmnI GAANNNNTTC 1 cut(s) 678
ZrmI AGTACT 2 cut(s) 379, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.