Rh7DG133200

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001710
Physical Location & Seq
Reverse (-)
11240709 .. 11243535
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG133200.1

Sequence Viewer

Length: 840 bp
ATGTCGATGTCGAAGAGCTCCAAGATGCTTCAATTCATCAACTACCGCATGCGGGTCACAATCCAAGACGGACGCCAGCTCGTCGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTCCCCCCGGCGAAAGGCAAGAAGACCAACGAAGAACGCGACGACCGCCGCACTCTAGGGATGGTCCTCCTCCGCGGCGAAGAGGTCGTCTCCATGACCGTCGAGGGTCCCCCTCCTCAGGAAGAGTCCAGAGCCAAAGCCTCCAGCGCCGCCGCCATGGCCGGGCCTGGAATCGGCCGCGGCGCCGGACGAGGCGTGGTGGCGCCACTCGCGCAGGCTCAGCCCGGTCTCTCCGGTCCGGTTCGCGGTGTCGGTGGGCCTGCTCCGGGAATGATGCAGCCTCAGATTTCTCGCCCGCCCATGCCGAATCTGTCTGCTCCGCCGATGAACTATCCGTCTGCGCCGGTGCTCAGGCCACCTGGCCAGATGGCTGGATATCCCCCAGGGCAGGGCCCGCCGCAGATGGCCAGGGGACCACCGCCTTCAATGCCTCCTCCGCAGTTTACTCGGCCCGGCGGTCCACCTCAGTTTCCAGGCCCTCCACCAATGCAGTTTGCTCAGAGACCAATGGGGCCTCCTGGCCAGATGATGAGGGGTCCACCGCCCCCGCCGCGGCCTGGAATGCAAGGTCCACCGCCTCGTCCTGGGATGCCTCCTCCACCTGGTGGTGTTCCTTTGTACGGACAGCCTCGTGGCATGCCGCCTCCACCCAACTCTCAGAACCAGCAACAAAATCAGCAGCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

279

Amino Acids

29.65

Weight (kDa)

11.16

Isoelectric Point (pI)

70.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 83 6e-17 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 352
AccB7I CCANNNNNTGG 1 cut(s) 755
AccII CGCG 6 cut(s) 189, 225, 330, 362, 396, 703
AcoI YGGCCR 5 cut(s) 309, 325, 511, 555, 670
AcyI GRCGYC 3 cut(s) 73, 333, 353
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 1 cut(s) 770
AgsI TTSAA 2 cut(s) 32, 576
AjnI CCWGG 9 cut(s) 316, 508, 532, 557, 622, 667, 706, 733, 751
AluBI AGCT 3 cut(s) 18, 79, 151
AluI AGCT 3 cut(s) 18, 79, 151
Alw21I GWGCWC 2 cut(s) 20, 501
Alw26I GTCTC 3 cut(s) 244, 383, 646
ApaI GGGCCC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 427, 829
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 5 cut(s) 299, 335, 355, 364, 493
AsuC2I CCSGG 5 cut(s) 158, 313, 375, 417, 603
AvaII GGWCC 7 cut(s) 214, 257, 386, 563, 608, 686, 719
AxyI CCTNAGG 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 545
BalI TGGCCA 3 cut(s) 513, 557, 672
BanI GGYRCC 2 cut(s) 332, 352
BanII GRGCYC 2 cut(s) 20, 545
BauI CACGAG 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 20, 501
BbvI GCAGC 1 cut(s) 439
BccI CCATC 3 cut(s) 205, 511, 547
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 708, 735, 753
BcnI CCSGG 5 cut(s) 158, 313, 375, 417, 603
BcoDI GTCTC 3 cut(s) 244, 383, 646
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 3 cut(s) 300, 336, 356
BglI GCCNNNNNGGC 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 369
Bme18I GGWCC 7 cut(s) 214, 257, 386, 563, 608, 686, 719
BmiI GGNNCC 8 cut(s) 258, 259, 334, 354, 543, 564, 663, 687
BmsI GCATC 3 cut(s) 15, 414, 729
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 500
Bpu1102I GCTNAGC 1 cut(s) 369
BpuMI CCSGG 5 cut(s) 158, 313, 375, 417, 603
BsaHI GRCGYC 3 cut(s) 73, 333, 353
BsaI GGTCTC 2 cut(s) 383, 646
BsaWI WCCGGW 2 cut(s) 383, 388
Bse118I RCCGGY 1 cut(s) 493
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 708, 735, 753
BseGI GGATG 2 cut(s) 216, 744
BseMII CTCAG 7 cut(s) 281, 383, 446, 514, 629, 662, 821
BseRI GAGGAG 5 cut(s) 152, 209, 255, 573, 735
BseSI GKGCMC 1 cut(s) 545
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 439
Bsh1236I CGCG 6 cut(s) 189, 225, 330, 362, 396, 703
Bsh1285I CGRYCG 3 cut(s) 106, 196, 328
BshNI GGYRCC 2 cut(s) 332, 352
BsiEI CGRYCG 3 cut(s) 106, 196, 328
BsiHKAI GWGCWC 2 cut(s) 20, 501
BsiSI CCGG 9 cut(s) 158, 312, 336, 375, 384, 389, 416, 494, 603
BslFI GGGAC 2 cut(s) 243, 576
BsmAI GTCTC 3 cut(s) 244, 383, 646
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 243, 576
BsmI GAATGC 1 cut(s) 717
Bso31I GGTCTC 2 cut(s) 383, 646
Bsp120I GGGCCC 1 cut(s) 541
Bsp1286I GDGCHC 3 cut(s) 20, 501, 545
Bsp1720I GCTNAGC 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 306
BspCNI CTCAG 7 cut(s) 280, 382, 445, 513, 628, 661, 820
BspFNI CGCG 6 cut(s) 189, 225, 330, 362, 396, 703
BspLI GGNNCC 8 cut(s) 258, 259, 334, 354, 543, 564, 663, 687
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 332, 352
BspTNI GGTCTC 2 cut(s) 383, 646
BsrFI RCCGGY 1 cut(s) 493
BssAI RCCGGY 1 cut(s) 493
BssNI GRCGYC 3 cut(s) 73, 333, 353
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 780
Bst2UI CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 708, 735, 753
Bst4CI ACNGT 2 cut(s) 250, 837
Bst6I CTCTTC 3 cut(s) 8, 225, 267
BstACI GRCGYC 3 cut(s) 73, 333, 353
BstC8I GCNNGC 8 cut(s) 50, 77, 149, 366, 411, 446, 545, 788
BstDEI CTNAG 7 cut(s) 267, 369, 432, 500, 615, 648, 807
BstDSI CCRYGG 4 cut(s) 223, 306, 328, 701
BstF5I GGATG 2 cut(s) 216, 744
BstFNI CGCG 6 cut(s) 189, 225, 330, 362, 396, 703
BstH2I RGCGCY 3 cut(s) 300, 336, 356
BstHHI GCGC 5 cut(s) 299, 335, 355, 364, 493
BstMAI GTCTC 3 cut(s) 244, 383, 646
BstMCI CGRYCG 3 cut(s) 106, 196, 328
BstNI CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 708, 735, 753
BstNSI RCATGY 2 cut(s) 52, 790
BstSLI GKGCMC 1 cut(s) 545
BstUI CGCG 6 cut(s) 189, 225, 330, 362, 396, 703
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 521
BstZI CGGCCG 1 cut(s) 325
Bsu36I CCTNAGG 1 cut(s) 267
BtgI CCRYGG 4 cut(s) 223, 306, 328, 701
BtsCI GGATG 2 cut(s) 216, 744
Cac8I GCNNGC 8 cut(s) 50, 77, 149, 366, 411, 446, 545, 788
CfoI GCGC 5 cut(s) 299, 335, 355, 364, 493
Cfr10I RCCGGY 1 cut(s) 493
Cfr42I CCGCGG 3 cut(s) 226, 331, 704
CpoI CGGWCCG 1 cut(s) 386
CseI GACGC 1 cut(s) 81
CsiI ACCWGGT 1 cut(s) 751
Csp6I GTAC 1 cut(s) 769
CspI CGGWCCG 1 cut(s) 386
CviAII CATG 7 cut(s) 49, 94, 112, 244, 307, 451, 787
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 7 cut(s) 267, 369, 432, 500, 615, 648, 807
DinI GGCGCC 2 cut(s) 334, 354
DraIII CACNNNGTG 1 cut(s) 755
EaeI YGGCCR 5 cut(s) 309, 325, 511, 555, 670
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 8, 225, 267
EarI CTCTTC 3 cut(s) 8, 225, 267
EciI GGCGGA 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 20, 545
Eco31I GGTCTC 2 cut(s) 383, 646
Eco32I GATATC 1 cut(s) 527
Eco47I GGWCC 7 cut(s) 214, 257, 386, 563, 608, 686, 719
Eco52I CGGCCG 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 4 cut(s) 257, 541, 626, 662
EcoRII CCWGG 9 cut(s) 316, 508, 532, 557, 622, 667, 706, 733, 751
EcoRV GATATC 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 20, 545
EgeI GGCGCC 2 cut(s) 334, 354
EheI GGCGCC 2 cut(s) 334, 354
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 7 cut(s) 52, 97, 115, 247, 310, 454, 790
FaiI YATR 7 cut(s) 50, 95, 113, 245, 308, 452, 788
FaqI GGGAC 2 cut(s) 243, 576
FatI CATG 7 cut(s) 48, 93, 111, 243, 306, 450, 786
FauI CCCGC 4 cut(s) 45, 453, 552, 705
FokI GGATG 2 cut(s) 223, 751
FriOI GRGCYC 2 cut(s) 20, 545
FspBI CTAG 1 cut(s) 206
GlaI GCGC 5 cut(s) 298, 334, 354, 363, 492
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 3 cut(s) 300, 336, 356
HapII CCGG 9 cut(s) 158, 312, 336, 375, 384, 389, 416, 494, 603
HgaI GACGC 1 cut(s) 81
HhaI GCGC 5 cut(s) 299, 335, 355, 364, 493
Hin1I GRCGYC 3 cut(s) 73, 333, 353
Hin1II CATG 7 cut(s) 52, 97, 115, 247, 310, 454, 790
Hin6I GCGC 5 cut(s) 297, 333, 353, 362, 491
HinP1I GCGC 5 cut(s) 297, 333, 353, 362, 491
HinfI GANTC 3 cut(s) 275, 321, 457
HpaII CCGG 9 cut(s) 158, 312, 336, 375, 384, 389, 416, 494, 603
Hpy166II GTNNAC 4 cut(s) 594, 611, 689, 722
Hpy188I TCNGA 3 cut(s) 435, 651, 810
Hpy188III TCNNGA 2 cut(s) 269, 279
Hpy8I GTNNAC 4 cut(s) 594, 611, 689, 722
Hpy99I CGWCG 3 cut(s) 86, 194, 254
HpyAV CCTTC 2 cut(s) 109, 582
HpyCH4III ACNGT 2 cut(s) 250, 837
HpyCH4V TGCA 3 cut(s) 427, 640, 715
HpyF3I CTNAG 7 cut(s) 267, 369, 432, 500, 615, 648, 807
Hsp92I GRCGYC 3 cut(s) 73, 333, 353
Hsp92II CATG 7 cut(s) 52, 97, 115, 247, 310, 454, 790
HspAI GCGC 5 cut(s) 297, 333, 353, 362, 491
KasI GGCGCC 2 cut(s) 332, 352
KflI GGGWCCC 1 cut(s) 257
KspI CCGCGG 3 cut(s) 226, 331, 704
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 4 cut(s) 23, 156, 418, 472
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 3 cut(s) 15, 414, 729
MabI ACCWGGT 1 cut(s) 751
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 5 cut(s) 25, 184, 194, 242, 284
MhlI GDGCHC 3 cut(s) 20, 501, 545
MlsI TGGCCA 3 cut(s) 513, 557, 672
MluCI AATT 1 cut(s) 32
MluNI TGGCCA 3 cut(s) 513, 557, 672
Mly113I GGCGCC 2 cut(s) 333, 353
MlyI GAGTC 1 cut(s) 284
Mox20I TGGCCA 3 cut(s) 513, 557, 672
MscI TGGCCA 3 cut(s) 513, 557, 672
Msp20I TGGCCA 3 cut(s) 513, 557, 672
MspA1I CMGCKG 3 cut(s) 225, 330, 703
MspI CCGG 9 cut(s) 158, 312, 336, 375, 384, 389, 416, 494, 603
Mva1269I GAATGC 1 cut(s) 717
MvaI CCWGG 9 cut(s) 318, 510, 534, 559, 624, 669, 708, 735, 753
MvnI CGCG 6 cut(s) 189, 225, 330, 362, 396, 703
NarI GGCGCC 2 cut(s) 333, 353
NciI CCSGG 5 cut(s) 158, 313, 375, 417, 603
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 7 cut(s) 52, 97, 115, 247, 310, 454, 790
NlaIV GGNNCC 8 cut(s) 258, 259, 334, 354, 543, 564, 663, 687
NmeAIII GCCGAG 2 cut(s) 105, 577
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 2 cut(s) 52, 790
PaeI GCATGC 2 cut(s) 52, 790
PasI CCCWGGG 1 cut(s) 533
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 132, 186
PctI GAATGC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 321, 457
PflMI CCANNNNNTGG 1 cut(s) 755
PfoI TCCNGGA 1 cut(s) 415
PleI GAGTC 1 cut(s) 283
PluTI GGCGCC 2 cut(s) 336, 356
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 9 cut(s) 316, 508, 532, 557, 622, 667, 706, 733, 751
PspGI CCWGG 9 cut(s) 316, 508, 532, 557, 622, 667, 706, 733, 751
PspN4I GGNNCC 8 cut(s) 258, 259, 334, 354, 543, 564, 663, 687
PspOMI GGGCCC 1 cut(s) 541
PspPPI RGGWCCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
Rsr2I CGGWCCG 1 cut(s) 386
RsrII CGGWCCG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 20
SacII CCGCGG 3 cut(s) 226, 331, 704
SapI GCTCTTC 1 cut(s) 8
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 3 cut(s) 20, 501, 545
SetI ASST 9 cut(s) 20, 81, 120, 153, 237, 511, 616, 721, 754
SexAI ACCWGGT 1 cut(s) 751
SfaNI GCATC 3 cut(s) 15, 414, 729
SfoI GGCGCC 2 cut(s) 334, 354
Sfr303I CCGCGG 3 cut(s) 226, 331, 704
SgrAI CRCCGGYG 1 cut(s) 493
SgrBI CCGCGG 3 cut(s) 226, 331, 704
SinI GGWCC 7 cut(s) 214, 257, 386, 563, 608, 686, 719
SphI GCATGC 2 cut(s) 52, 790
Sse9I AATT 1 cut(s) 32
SspDI GGCGCC 2 cut(s) 332, 352
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 2 cut(s) 250, 837
TaqI TCGA 4 cut(s) 5, 11, 102, 252
TasI AATT 1 cut(s) 32
TfiI GAWTC 2 cut(s) 321, 457
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 427, 829
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 25, 82, 128, 491
TspGWI ACGGA 3 cut(s) 84, 474, 786
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 7 cut(s) 214, 257, 386, 563, 608, 686, 719
XceI RCATGY 2 cut(s) 52, 790
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.