Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0001710

Physical Location & Seq

Genomic Coordinates Reverse (-)

30995071 .. 30997515

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1169400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCGATGTCGAAGAGCTCTAAGATGCTGCAATTCATCAACTACCGGATGCGAGTGACGATCCAAGACGGCAGGCAGCTCGTCGGCAAGTTCATGGCCTTCGATCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGTTGCCTCCACTGAAAGGAAAGAAGACCAACGAGGAGCGCGACGACCGCCGGACACTAGGCCTCGTCCTCCTCCGCGGCGAAGAGGTGGTCTCCATGACTGTCGAGGGCCCACCTCCTCAGGAAGAGTCTCGTGCAAAGGCAGCCAGCGCCGCTGCTTTGGCTGGTCCCGGTTTGGGCCGCCCCGCCGGACGAGGTATCCCCACTGCTCCGCTGGCCCAGGCCCAGCCTGGTCTCTCTGGCCCGGTTCGCGGCGTTGGTGGACCGGCCCCTGGCATGATGCAACCCCAGATTTCACGCCCGCCAGTTCCGAACCTCTCCGCGCCTCCTATGTCCTACCCGTCTGCTCCGGTGATTCGTCCACCTGGACAGATGCCTGGATATCCCGGGCAACCTCCGATGAGTCGTGGTCCACCGCCTGGTGTTCCACCTCCGCAGTTTTCTAGGCCTCCTGGTGGGGGTCCACCTCAGCAATTCCCTGGCCCGCCCCAGATGCAGTTTGGGCAGAGGCCGATGGGTCCCCCGCCGCCTGGGCAGATGATGAGGGGTCCACCGCCTCCACCTCGCCCTGGAATGCAAGCTCCCCCGCCCCGTCCTGGAATGCCTCCTCCTCCTGGCGGTGCAATGCATATGTTTGGACCGCCTCGTCCTGGAATGCCGCCTCCACCCAACCCTCAGAACCAGCAGCAAAATCAGCAGCAACAGTTTGTTAGCTGTTGCGTTTGCGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

294

Amino Acids

31.1

Weight (kDa)

10.84

Isoelectric Point (pI)

75.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LSM	PF01423	9 - 83	7.4e-17	LSM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT5G44500 AT5G44500
fragaria_vesca	FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920
malus_domestica	MD04G1002600.v1.1 MD04G1223300.v1.1 MD06G1169400.v1.1 MD14G1174700.v1.1
prunus_persica	Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.6G342400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451231 RchiOBHm_Chr7g0192911
rosa_laevigata	RLG00000004313 RLG00000025677
rosa_multiflora	Rmu_co8453239.1_g000001 Rmu_sc0002040.1_g000055 Rmu_sc0002575.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262550 Rroxscaffold_6G00428690
rosa_rugosa	Rorug02G0632700 Rorug07G0005600 Rorug07G0005700 Rorug07G0005800 Rorug07G0005800 Rorug07G0005800
rosa_samantha	Rh3AG035200 Rh3BG035700 Rh3CG034300 Rh3DG035300 Rh7AG131300 Rh7BG132100 Rh7BG447000 Rh7BG447200 Rh7CG135400 Rh7DG133200
rosa_wichuraiana	Rw3G002600 Rw7G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	792
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccII	CGCG	4 cut(s)	189, 225, 399, 470
AclWI	GGATC	1 cut(s)	55
AluBI	AGCT	4 cut(s)	18, 79, 728, 861
AluI	AGCT	4 cut(s)	18, 79, 728, 861
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	3 cut(s)	244, 282, 386
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	533
ApaI	GGGCCC	1 cut(s)	260
ApeKI	GCWGC	6 cut(s)	28, 76, 290, 302, 832, 844
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	3 cut(s)	189, 299, 472
AsuC2I	CCSGG	4 cut(s)	318, 392, 534, 535
AsuHPI	GGTGA	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	7 cut(s)	314, 410, 557, 608, 665, 695, 785
AxyI	CCTNAGG	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	260
BanII	GRGCYC	2 cut(s)	20, 260
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	6 cut(s)	15, 88, 289, 302, 844, 856
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BciVI	GTATCC	1 cut(s)	356
BcnI	CCSGG	4 cut(s)	318, 392, 534, 535
BcoDI	GTCTC	3 cut(s)	244, 282, 386
BfaI	CTAG	2 cut(s)	206, 591
BfoI	RGCGCY	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	356
BglI	GCCNNNNNGGC	1 cut(s)	679
Bme18I	GGWCC	7 cut(s)	314, 410, 557, 608, 665, 695, 785
BmeT110I	CYCGRG	1 cut(s)	533
BmiI	GGNNCC	7 cut(s)	258, 316, 417, 609, 666, 667, 696
BmsI	GCATC	5 cut(s)	15, 39, 417, 510, 630
BpiI	GAAGAC	1 cut(s)	179
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
Bpu10I	CCTNAGC	1 cut(s)	615
BpuMI	CCSGG	4 cut(s)	318, 392, 534, 535
BsaI	GGTCTC	2 cut(s)	244, 386
BsaJI	CCNNGG	8 cut(s)	124, 223, 366, 418, 533, 625, 677, 715
BsaWI	WCCGGW	2 cut(s)	45, 496
Bse118I	RCCGGY	1 cut(s)	412
Bse1I	ACTGG	1 cut(s)	452
Bse21I	CCTNAGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	777
BseDI	CCNNGG	8 cut(s)	124, 223, 366, 418, 533, 625, 677, 715
BseGI	GGATG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	3 cut(s)	281, 629, 836
BseNI	ACTGG	1 cut(s)	452
BseRI	GAGGAG	6 cut(s)	152, 197, 209, 255, 744, 747
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	6 cut(s)	15, 88, 289, 302, 844, 856
BseYI	CCCAGC	1 cut(s)	372
Bsh1236I	CGCG	4 cut(s)	189, 225, 399, 470
Bsh1285I	CGRYCG	2 cut(s)	106, 196
BsiEI	CGRYCG	2 cut(s)	106, 196
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	8 cut(s)	46, 199, 318, 336, 392, 413, 497, 534
BslFI	GGGAC	2 cut(s)	300, 651
BsmAI	GTCTC	3 cut(s)	244, 282, 386
BsmFI	GGGAC	2 cut(s)	300, 651
BsmI	GAATGC	3 cut(s)	726, 753, 807
Bso31I	GGTCTC	2 cut(s)	244, 386
BsoBI	CYCGRG	1 cut(s)	533
Bsp120I	GGGCCC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	20, 260
Bsp143I	GATC	2 cut(s)	60, 103
BspCNI	CTCAG	3 cut(s)	280, 628, 835
BspFNI	CGCG	4 cut(s)	189, 225, 399, 470
BspLI	GGNNCC	7 cut(s)	258, 316, 417, 609, 666, 667, 696
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	8
BspTNI	GGTCTC	2 cut(s)	244, 386
BsrDI	GCAATG	1 cut(s)	777
BsrFI	RCCGGY	1 cut(s)	412
BsrI	ACTGG	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	8 cut(s)	124, 223, 366, 418, 533, 625, 677, 715
BssMI	GATC	2 cut(s)	60, 103
BssSI	CACGAG	1 cut(s)	279
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	250, 852
Bst6I	CTCTTC	3 cut(s)	8, 225, 267
BstC8I	GCNNGC	6 cut(s)	74, 295, 363, 449, 632, 726
BstDEI	CTNAG	4 cut(s)	21, 267, 615, 822
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	4 cut(s)	189, 225, 399, 470
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	3 cut(s)	189, 299, 472
BstKTI	GATC	2 cut(s)	63, 106
BstMAI	GTCTC	3 cut(s)	244, 282, 386
BstMBI	GATC	2 cut(s)	60, 103
BstMCI	CGRYCG	2 cut(s)	106, 196
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	4 cut(s)	189, 225, 399, 470
BstV1I	GCAGC	6 cut(s)	15, 88, 289, 302, 844, 856
BstV2I	GAAGAC	1 cut(s)	179
Bsu36I	CCTNAGG	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	158, 351
Cac8I	GCNNGC	6 cut(s)	74, 295, 363, 449, 632, 726
CfoI	GCGC	3 cut(s)	189, 299, 472
Cfr10I	RCCGGY	1 cut(s)	412
Cfr42I	CCGCGG	1 cut(s)	226
Cfr9I	CCCGGG	1 cut(s)	533
CviAII	CATG	4 cut(s)	94, 112, 244, 424
DdeI	CTNAG	4 cut(s)	21, 267, 615, 822
DpnI	GATC	2 cut(s)	62, 105
DpnII	GATC	2 cut(s)	60, 103
DrdI	GACNNNNNNGTC	1 cut(s)	792
DseDI	GACNNNNNNGTC	1 cut(s)	792
Eam1104I	CTCTTC	3 cut(s)	8, 225, 267
EarI	CTCTTC	3 cut(s)	8, 225, 267
Ecl136II	GAGCTC	1 cut(s)	18
Eco147I	AGGCCT	2 cut(s)	210, 595
Eco24I	GRGCYC	2 cut(s)	20, 260
Eco31I	GGTCTC	2 cut(s)	244, 386
Eco32I	GATATC	1 cut(s)	530
Eco47I	GGWCC	7 cut(s)	314, 410, 557, 608, 665, 695, 785
Eco53kI	GAGCTC	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	533
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	2 cut(s)	256, 665
EcoRV	GATATC	1 cut(s)	530
EcoT22I	ATGCAT	1 cut(s)	777
EcoT38I	GRGCYC	2 cut(s)	20, 260
FaeI	CATG	4 cut(s)	97, 115, 247, 427
FaiI	YATR	7 cut(s)	95, 113, 245, 425, 479, 777, 779
FaqI	GGGAC	2 cut(s)	300, 651
FatI	CATG	4 cut(s)	93, 111, 243, 423
FauI	CCCGC	5 cut(s)	340, 456, 639, 678, 741
FauNDI	CATATG	1 cut(s)	777
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	2 cut(s)	20, 260
FspBI	CTAG	2 cut(s)	206, 591
GlaI	GCGC	3 cut(s)	188, 298, 471
GsaI	CCCAGC	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	300
HapII	CCGG	8 cut(s)	46, 199, 318, 336, 392, 413, 497, 534
HhaI	GCGC	3 cut(s)	189, 299, 472
Hin1II	CATG	4 cut(s)	97, 115, 247, 427
Hin6I	GCGC	3 cut(s)	187, 297, 470
HinP1I	GCGC	3 cut(s)	187, 297, 470
HinfI	GANTC	3 cut(s)	275, 502, 550
HpaII	CCGG	8 cut(s)	46, 199, 318, 336, 392, 413, 497, 534
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	5 cut(s)	410, 509, 560, 611, 698
Hpy188I	TCNGA	3 cut(s)	459, 546, 825
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	5 cut(s)	410, 509, 560, 611, 698
Hpy99I	CGWCG	2 cut(s)	86, 194
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	250, 852
HpyCH4V	TGCA	7 cut(s)	31, 284, 430, 643, 724, 770, 775
HpyF3I	CTNAG	4 cut(s)	21, 267, 615, 822
Hsp92II	CATG	4 cut(s)	97, 115, 247, 427
HspAI	GCGC	3 cut(s)	187, 297, 470
KflI	GGGWCCC	1 cut(s)	665
KspI	CCGCGG	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	60, 103
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	4 cut(s)	184, 361, 499, 733
Lsp1109I	GCAGC	6 cut(s)	15, 88, 289, 302, 844, 856
LweI	GCATC	5 cut(s)	15, 39, 417, 510, 630
MaeI	CTAG	2 cut(s)	206, 591
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	62, 105
MboI	GATC	2 cut(s)	60, 103
MboII	GAAGA	4 cut(s)	25, 184, 242, 284
MhlI	GDGCHC	2 cut(s)	20, 260
MluCI	AATT	2 cut(s)	32, 620
MlyI	GAGTC	2 cut(s)	284, 559
Mph1103I	ATGCAT	1 cut(s)	777
MspA1I	CMGCKG	3 cut(s)	225, 302, 361
MspI	CCGG	8 cut(s)	46, 199, 318, 336, 392, 413, 497, 534
Mva1269I	GAATGC	3 cut(s)	726, 753, 807
MvnI	CGCG	4 cut(s)	189, 225, 399, 470
NciI	CCSGG	4 cut(s)	318, 392, 534, 535
NdeI	CATATG	1 cut(s)	777
NdeII	GATC	2 cut(s)	60, 103
NlaIII	CATG	4 cut(s)	97, 115, 247, 427
NlaIV	GGNNCC	7 cut(s)	258, 316, 417, 609, 666, 667, 696
NmeAIII	GCCGAG	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	777
PceI	AGGCCT	2 cut(s)	210, 595
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 132, 186
PctI	GAATGC	3 cut(s)	726, 753, 807
PfeI	GAWTC	1 cut(s)	502
PflMI	CCANNNNNTGG	1 cut(s)	566
PfoI	TCCNGGA	2 cut(s)	742, 796
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	2 cut(s)	283, 558
PpsI	GAGTC	2 cut(s)	283, 558
PpuMI	RGGWCCY	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	372
PspN4I	GGNNCC	7 cut(s)	258, 316, 417, 609, 666, 667, 696
PspOMI	GGGCCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	665
PvuI	CGATCG	1 cut(s)	106
SacI	GAGCTC	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	226
SapI	GCTCTTC	1 cut(s)	8
Sau3AI	GATC	2 cut(s)	60, 103
SchI	GAGTC	2 cut(s)	284, 559
SduI	GDGCHC	2 cut(s)	20, 260
SfaNI	GCATC	5 cut(s)	15, 39, 417, 510, 630
Sfr303I	CCGCGG	1 cut(s)	226
SgrBI	CCGCGG	1 cut(s)	226
SinI	GGWCC	7 cut(s)	314, 410, 557, 608, 665, 695, 785
SmaI	CCCGGG	1 cut(s)	535
Sse9I	AATT	2 cut(s)	32, 620
SseBI	AGGCCT	2 cut(s)	210, 595
SspMI	CTAG	2 cut(s)	206, 591
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	2 cut(s)	210, 595
TaaI	ACNGT	2 cut(s)	250, 852
TaqI	TCGA	4 cut(s)	5, 11, 102, 252
TasI	AATT	2 cut(s)	32, 620
TauI	GCSGC	6 cut(s)	228, 302, 330, 402, 676, 808
TfiI	GAWTC	1 cut(s)	502
TscAI	CASTG	2 cut(s)	165, 358
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	6 cut(s)	28, 76, 290, 302, 832, 844
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	25, 82, 128
TspMI	CCCGGG	1 cut(s)	533
TspRI	CASTG	2 cut(s)	165, 358
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	7 cut(s)	314, 410, 557, 608, 665, 695, 785
XcmI	CCANNNNNNNNNTGG	3 cut(s)	358, 374, 644
XmaI	CCCGGG	1 cut(s)	533
XspI	CTAG	2 cut(s)	206, 591
Zsp2I	ATGCAT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.