Rh7AG131300

Small nuclear ribonucleoprotein-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0001710
Physical Location & Seq
Reverse (-)
10472215 .. 10475314
3100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG131300.1

Sequence Viewer

Length: 804 bp
ATGTCGATGTCGAAGAGCTCCAAGATGCTTCAATTCATCAACTACCGCATGCGGGTCACAATCCAAGACGGACGCCAGCTCGTCGGCAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTCCCCCCGGCGAAAGGCAAGAAGACCAACGAAGAACGCGACGACCGCCGCACTCTAGGGATGGTCCTCCTCCGCGGCGAAGAGGTCGTCTCCATGACCGTCGAGGGTCCCCCTCCTCAGGAAGAGTCCAGAGCCAAAGCCTCCAGCGCCGCCGCCATGGCCGGGCCTGGAATCGGCCGCGGCGCCGGACGAGGCGTGGTGGCGCCACTCGCGCAGGCTCAGCCGGGTCTCTCCGGTCCGGTTCGCGGTGTCGGTGGGCCTGCTCCGGGAATGATGCAGCCTCAGATTTCTCGCCCGCCGATGAACTATCCGTCTGCGCCGGTGCTCAGGCCACCTGGCCAGATGGCTGGATATCCCCCAGGGCAGGGGCCGCCGCAGATGGCCAGGGGACCACCGCCTTCAATGCCTCCTCCACAGTTTACTCGGCCCGGCGGTCCACCTCAGTTTCCAGGCCCTCCACCAATGCAGTTTGCTCAGAGACCAATGGGGCCTCCTGGCCAGATGATGAGGGGTCCACCGCCTCCGCCGCGGCCTGGAATGCAAGGTCCACCGCCTCGTCCTGGGATGCCTCCTCCACCTGGTGGTGTTCCTTTGTACGGACAGCCTCGTGGCATGCCGCCTCCACCCAACTCTCAGAACCAGCAGCAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko05322 map03040 map05322
Pfam Domains
Protein Families
LSM

Protein Analysis

267

Amino Acids

28.35

Weight (kDa)

11.16

Isoelectric Point (pI)

68.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LSM PF01423 9 - 83 5.5e-17 LSM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 332, 352
AccB7I CCANNNNNTGG 1 cut(s) 731
AccII CGCG 6 cut(s) 189, 225, 330, 362, 396, 679
AcoI YGGCCR 5 cut(s) 309, 325, 487, 531, 646
AcyI GRCGYC 3 cut(s) 73, 333, 353
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 1 cut(s) 746
AgsI TTSAA 2 cut(s) 32, 552
AjnI CCWGG 9 cut(s) 316, 484, 508, 533, 598, 643, 682, 709, 727
AluBI AGCT 3 cut(s) 18, 79, 151
AluI AGCT 3 cut(s) 18, 79, 151
Alw21I GWGCWC 2 cut(s) 20, 477
Alw26I GTCTC 3 cut(s) 244, 383, 622
ApeKI GCWGC 2 cut(s) 427, 793
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AspLEI GCGC 5 cut(s) 299, 335, 355, 364, 469
AsuC2I CCSGG 5 cut(s) 158, 313, 375, 417, 579
AvaII GGWCC 7 cut(s) 214, 257, 386, 539, 584, 662, 695
AxyI CCTNAGG 1 cut(s) 267
BalI TGGCCA 3 cut(s) 489, 533, 648
BanI GGYRCC 2 cut(s) 332, 352
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 2 cut(s) 20, 477
BbvI GCAGC 1 cut(s) 439
BccI CCATC 3 cut(s) 205, 487, 523
BciT130I CCWGG 9 cut(s) 318, 486, 510, 535, 600, 645, 684, 711, 729
BcnI CCSGG 5 cut(s) 158, 313, 375, 417, 579
BcoDI GTCTC 3 cut(s) 244, 383, 622
BfaI CTAG 1 cut(s) 206
BfoI RGCGCY 3 cut(s) 300, 336, 356
BglI GCCNNNNNGGC 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 369
Bme18I GGWCC 7 cut(s) 214, 257, 386, 539, 584, 662, 695
BmiI GGNNCC 8 cut(s) 258, 259, 334, 354, 519, 540, 639, 663
BmsI GCATC 3 cut(s) 15, 414, 705
BpiI GAAGAC 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 476
Bpu1102I GCTNAGC 1 cut(s) 369
BpuMI CCSGG 5 cut(s) 158, 313, 375, 417, 579
BsaHI GRCGYC 3 cut(s) 73, 333, 353
BsaI GGTCTC 2 cut(s) 383, 622
BsaWI WCCGGW 2 cut(s) 383, 388
Bse118I RCCGGY 1 cut(s) 469
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 9 cut(s) 318, 486, 510, 535, 600, 645, 684, 711, 729
BseGI GGATG 2 cut(s) 216, 720
BseMII CTCAG 7 cut(s) 281, 383, 446, 490, 605, 638, 797
BseRI GAGGAG 5 cut(s) 152, 209, 255, 549, 711
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 439
Bsh1236I CGCG 6 cut(s) 189, 225, 330, 362, 396, 679
Bsh1285I CGRYCG 3 cut(s) 106, 196, 328
BshNI GGYRCC 2 cut(s) 332, 352
BsiEI CGRYCG 3 cut(s) 106, 196, 328
BsiHKAI GWGCWC 2 cut(s) 20, 477
BsiSI CCGG 9 cut(s) 158, 312, 336, 374, 384, 389, 416, 470, 579
BslFI GGGAC 2 cut(s) 243, 552
BsmAI GTCTC 3 cut(s) 244, 383, 622
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 243, 552
BsmI GAATGC 1 cut(s) 693
Bso31I GGTCTC 2 cut(s) 383, 622
Bsp1286I GDGCHC 2 cut(s) 20, 477
Bsp1720I GCTNAGC 1 cut(s) 369
Bsp19I CCATGG 1 cut(s) 306
BspCNI CTCAG 7 cut(s) 280, 382, 445, 489, 604, 637, 796
BspFNI CGCG 6 cut(s) 189, 225, 330, 362, 396, 679
BspLI GGNNCC 8 cut(s) 258, 259, 334, 354, 519, 540, 639, 663
BspQI GCTCTTC 1 cut(s) 8
BspT107I GGYRCC 2 cut(s) 332, 352
BspTNI GGTCTC 2 cut(s) 383, 622
BsrFI RCCGGY 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 469
BssNI GRCGYC 3 cut(s) 73, 333, 353
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 9 cut(s) 318, 486, 510, 535, 600, 645, 684, 711, 729
Bst4CI ACNGT 3 cut(s) 250, 567, 801
Bst6I CTCTTC 3 cut(s) 8, 225, 267
BstACI GRCGYC 3 cut(s) 73, 333, 353
BstC8I GCNNGC 7 cut(s) 50, 77, 149, 366, 411, 446, 764
BstDEI CTNAG 7 cut(s) 267, 369, 432, 476, 591, 624, 783
BstDSI CCRYGG 4 cut(s) 223, 306, 328, 677
BstF5I GGATG 2 cut(s) 216, 720
BstFNI CGCG 6 cut(s) 189, 225, 330, 362, 396, 679
BstH2I RGCGCY 3 cut(s) 300, 336, 356
BstHHI GCGC 5 cut(s) 299, 335, 355, 364, 469
BstMAI GTCTC 3 cut(s) 244, 383, 622
BstMCI CGRYCG 3 cut(s) 106, 196, 328
BstNI CCWGG 9 cut(s) 318, 486, 510, 535, 600, 645, 684, 711, 729
BstNSI RCATGY 2 cut(s) 52, 766
BstUI CGCG 6 cut(s) 189, 225, 330, 362, 396, 679
BstV1I GCAGC 1 cut(s) 439
BstV2I GAAGAC 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 497
BstZI CGGCCG 1 cut(s) 325
Bsu36I CCTNAGG 1 cut(s) 267
BtgI CCRYGG 4 cut(s) 223, 306, 328, 677
BtsCI GGATG 2 cut(s) 216, 720
Cac8I GCNNGC 7 cut(s) 50, 77, 149, 366, 411, 446, 764
CfoI GCGC 5 cut(s) 299, 335, 355, 364, 469
Cfr10I RCCGGY 1 cut(s) 469
Cfr42I CCGCGG 3 cut(s) 226, 331, 680
CpoI CGGWCCG 1 cut(s) 386
CseI GACGC 1 cut(s) 81
CsiI ACCWGGT 1 cut(s) 727
Csp6I GTAC 1 cut(s) 745
CspI CGGWCCG 1 cut(s) 386
CviAII CATG 6 cut(s) 49, 94, 112, 244, 307, 763
CviQI GTAC 1 cut(s) 745
DdeI CTNAG 7 cut(s) 267, 369, 432, 476, 591, 624, 783
DinI GGCGCC 2 cut(s) 334, 354
DraIII CACNNNGTG 1 cut(s) 731
EaeI YGGCCR 5 cut(s) 309, 325, 487, 531, 646
EagI CGGCCG 1 cut(s) 325
Eam1104I CTCTTC 3 cut(s) 8, 225, 267
EarI CTCTTC 3 cut(s) 8, 225, 267
EciI GGCGGA 1 cut(s) 663
Ecl136II GAGCTC 1 cut(s) 18
EclXI CGGCCG 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 383, 622
Eco32I GATATC 1 cut(s) 503
Eco47I GGWCC 7 cut(s) 214, 257, 386, 539, 584, 662, 695
Eco52I CGGCCG 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 18
Eco81I CCTNAGG 1 cut(s) 267
EcoICRI GAGCTC 1 cut(s) 18
EcoO109I RGGNCCY 3 cut(s) 257, 602, 638
EcoRII CCWGG 9 cut(s) 316, 484, 508, 533, 598, 643, 682, 709, 727
EcoRV GATATC 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 20
EgeI GGCGCC 2 cut(s) 334, 354
EheI GGCGCC 2 cut(s) 334, 354
ErhI CCWWGG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 6 cut(s) 52, 97, 115, 247, 310, 766
FaiI YATR 6 cut(s) 50, 95, 113, 245, 308, 764
FaqI GGGAC 2 cut(s) 243, 552
FatI CATG 6 cut(s) 48, 93, 111, 243, 306, 762
FauI CCCGC 2 cut(s) 45, 453
FokI GGATG 2 cut(s) 223, 727
FriOI GRGCYC 1 cut(s) 20
FspBI CTAG 1 cut(s) 206
GlaI GCGC 5 cut(s) 298, 334, 354, 363, 468
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 3 cut(s) 300, 336, 356
HapII CCGG 9 cut(s) 158, 312, 336, 374, 384, 389, 416, 470, 579
HgaI GACGC 1 cut(s) 81
HhaI GCGC 5 cut(s) 299, 335, 355, 364, 469
Hin1I GRCGYC 3 cut(s) 73, 333, 353
Hin1II CATG 6 cut(s) 52, 97, 115, 247, 310, 766
Hin6I GCGC 5 cut(s) 297, 333, 353, 362, 467
HinP1I GCGC 5 cut(s) 297, 333, 353, 362, 467
HinfI GANTC 2 cut(s) 275, 321
HpaII CCGG 9 cut(s) 158, 312, 336, 374, 384, 389, 416, 470, 579
Hpy166II GTNNAC 4 cut(s) 570, 587, 665, 698
Hpy188I TCNGA 3 cut(s) 435, 627, 786
Hpy188III TCNNGA 2 cut(s) 269, 279
Hpy8I GTNNAC 4 cut(s) 570, 587, 665, 698
Hpy99I CGWCG 3 cut(s) 86, 194, 254
HpyAV CCTTC 2 cut(s) 109, 558
HpyCH4III ACNGT 3 cut(s) 250, 567, 801
HpyCH4V TGCA 3 cut(s) 427, 616, 691
HpyF3I CTNAG 7 cut(s) 267, 369, 432, 476, 591, 624, 783
Hsp92I GRCGYC 3 cut(s) 73, 333, 353
Hsp92II CATG 6 cut(s) 52, 97, 115, 247, 310, 766
HspAI GCGC 5 cut(s) 297, 333, 353, 362, 467
KasI GGCGCC 2 cut(s) 332, 352
KflI GGGWCCC 1 cut(s) 257
KspI CCGCGG 3 cut(s) 226, 331, 680
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 3 cut(s) 23, 156, 418
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 3 cut(s) 15, 414, 705
MabI ACCWGGT 1 cut(s) 727
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 55
MboII GAAGA 5 cut(s) 25, 184, 194, 242, 284
MhlI GDGCHC 2 cut(s) 20, 477
MlsI TGGCCA 3 cut(s) 489, 533, 648
MluCI AATT 1 cut(s) 32
MluNI TGGCCA 3 cut(s) 489, 533, 648
Mly113I GGCGCC 2 cut(s) 333, 353
MlyI GAGTC 1 cut(s) 284
Mox20I TGGCCA 3 cut(s) 489, 533, 648
MscI TGGCCA 3 cut(s) 489, 533, 648
Msp20I TGGCCA 3 cut(s) 489, 533, 648
MspA1I CMGCKG 3 cut(s) 225, 330, 679
MspI CCGG 9 cut(s) 158, 312, 336, 374, 384, 389, 416, 470, 579
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 9 cut(s) 318, 486, 510, 535, 600, 645, 684, 711, 729
MvnI CGCG 6 cut(s) 189, 225, 330, 362, 396, 679
NarI GGCGCC 2 cut(s) 333, 353
NciI CCSGG 5 cut(s) 158, 313, 375, 417, 579
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 6 cut(s) 52, 97, 115, 247, 310, 766
NlaIV GGNNCC 8 cut(s) 258, 259, 334, 354, 519, 540, 639, 663
NmeAIII GCCGAG 2 cut(s) 105, 553
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 2 cut(s) 52, 766
PaeI GCATGC 2 cut(s) 52, 766
PasI CCCWGGG 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 132, 186
PctI GAATGC 1 cut(s) 693
PfeI GAWTC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 731
PfoI TCCNGGA 1 cut(s) 415
PleI GAGTC 1 cut(s) 283
PluTI GGCGCC 2 cut(s) 336, 356
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 9 cut(s) 316, 484, 508, 533, 598, 643, 682, 709, 727
PspGI CCWGG 9 cut(s) 316, 484, 508, 533, 598, 643, 682, 709, 727
PspN4I GGNNCC 8 cut(s) 258, 259, 334, 354, 519, 540, 639, 663
PspPPI RGGWCCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 746
RsaNI GTAC 1 cut(s) 745
Rsr2I CGGWCCG 1 cut(s) 386
RsrII CGGWCCG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 20
SacII CCGCGG 3 cut(s) 226, 331, 680
SapI GCTCTTC 1 cut(s) 8
SchI GAGTC 1 cut(s) 284
SduI GDGCHC 2 cut(s) 20, 477
SetI ASST 9 cut(s) 20, 81, 120, 153, 237, 487, 592, 697, 730
SexAI ACCWGGT 1 cut(s) 727
SfaNI GCATC 3 cut(s) 15, 414, 705
SfoI GGCGCC 2 cut(s) 334, 354
Sfr303I CCGCGG 3 cut(s) 226, 331, 680
SgrAI CRCCGGYG 1 cut(s) 469
SgrBI CCGCGG 3 cut(s) 226, 331, 680
SinI GGWCC 7 cut(s) 214, 257, 386, 539, 584, 662, 695
SphI GCATGC 2 cut(s) 52, 766
Sse9I AATT 1 cut(s) 32
SspDI GGCGCC 2 cut(s) 332, 352
SspMI CTAG 1 cut(s) 206
SstI GAGCTC 1 cut(s) 20
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 250, 567, 801
TaqI TCGA 4 cut(s) 5, 11, 102, 252
TasI AATT 1 cut(s) 32
TfiI GAWTC 1 cut(s) 321
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 2 cut(s) 427, 793
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 25, 82, 128, 467
TspGWI ACGGA 3 cut(s) 84, 450, 762
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 7 cut(s) 214, 257, 386, 539, 584, 662, 695
XceI RCATGY 2 cut(s) 52, 766
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.