Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001710

Physical Location & Seq

Genomic Coordinates Reverse (-)

14491920 .. 14494194

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G168200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCGATGTCGAAGAGCTCCAAGATGCTGCAATTCATAAACTACCGAATGCGAGTGACGATCCAAGACGGTCGGCAGCTCGTCGGCAAGTTCATGGCCTTCGATCGCCACATGAACCTCGTCCTGGGCGACTGCGAGGAGTTTCGCAAGCTCCCGCCATTGAAGGGCAAGAAGAGCAACGAGGAACGCGACGACCGTCGAACCCTAGGACTCGTCCTCCTCCGCGGTGAAGAGGTGATCTCCATGACCGTCGAGGGCCCACCTCCTCAGGAAGAGTCACGTGCCAAGGCCGCCAGCGCCGCCGCTTTGGCTGGCCCCGGTTTGGGCCGGGCCGCCGGTCGAGGTATCCCCACTGCTCCACTGGCCCAGGCACAGCCCGGTCTCTCCGGCCCGGTTCGAGGCGTGGGTGGGCCCGCCCCCGGCATGATGCAGCCGCAGATTTCACGCCCTCCTGTTCCGAACCTCTCTGCGCCGCCTATGTCGTACCCGGCTGCTCCGGTGATTCGTCCGCCTGGGCAGATGCCTGGATATCCCGGTCAGGGCCCACCGCAGATGGCGCGGGGTCCACCGCCTGGTGTGCCGCCTCCACAGTTTCCGAGGCCTGGTGGCCCACCTCTGCAATTCCAGGGCCCACCTCAGATGCAGTTTGGGCAGAGGCCGATGGGTCCTCCGCCGCCTGGGCAGATGATGAGGGGCCCACCTCCTCCGCCTCGACCCGGCATGCCTGGTCCACCACCGCATCGTCCTGGGATGCCTCCTCCACCTGGTGGTCAAGTTCCTGTGTTTGGACCCCCTCGTCCTGGAATGCCACCTCCACCCAACCCTCAGAACCAGCAACAAAATCAGCAGCAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

286

Amino Acids

30.19

Weight (kDa)

11.28

Isoelectric Point (pI)

72.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT5G44500 AT5G44500
fragaria_vesca	FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920
malus_domestica	MD04G1002600.v1.1 MD04G1223300.v1.1 MD06G1169400.v1.1 MD14G1174700.v1.1
prunus_persica	Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.6G342400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451231 RchiOBHm_Chr7g0192911
rosa_laevigata	RLG00000004313 RLG00000025677
rosa_multiflora	Rmu_co8453239.1_g000001 Rmu_sc0002040.1_g000055 Rmu_sc0002575.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262550 Rroxscaffold_6G00428690
rosa_rugosa	Rorug02G0632700 Rorug07G0005600 Rorug07G0005700 Rorug07G0005800 Rorug07G0005800 Rorug07G0005800
rosa_samantha	Rh3AG035200 Rh3BG035700 Rh3CG034300 Rh3DG035300 Rh7AG131300 Rh7BG132100 Rh7BG447000 Rh7BG447200 Rh7CG135400 Rh7DG133200
rosa_wichuraiana	Rw3G002600 Rw7G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	795
AccB7I	CCANNNNNTGG	2 cut(s)	572, 767
AccII	CGCG	3 cut(s)	189, 225, 559
AclWI	GGATC	1 cut(s)	55
AcvI	CACGTG	1 cut(s)	281
AdeI	CACNNNGTG	1 cut(s)	767
AfaI	GTAC	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	3 cut(s)	18, 79, 151
AluI	AGCT	3 cut(s)	18, 79, 151
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	55
ApaI	GGGCCC	5 cut(s)	260, 414, 545, 632, 698
ApeKI	GCWGC	6 cut(s)	28, 76, 430, 491, 847, 850
AspA2I	CCTAGG	1 cut(s)	205
AspLEI	GCGC	3 cut(s)	299, 472, 559
AsuC2I	CCSGG	8 cut(s)	318, 329, 378, 392, 420, 488, 534, 717
AsuHPI	GGTGA	3 cut(s)	239, 247, 511
AvaII	GGWCC	4 cut(s)	563, 665, 728, 788
AvrII	CCTAGG	1 cut(s)	205
AxyI	CCTNAGG	1 cut(s)	267
BaeGI	GKGCMC	5 cut(s)	260, 414, 545, 632, 698
BanII	GRGCYC	6 cut(s)	20, 260, 414, 545, 632, 698
BbrPI	CACGTG	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	4 cut(s)	15, 88, 442, 478
BccI	CCATC	2 cut(s)	547, 655
BciVI	GTATCC	1 cut(s)	356
BcnI	CCSGG	8 cut(s)	318, 329, 378, 392, 420, 488, 534, 717
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	206
BfoI	RGCGCY	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	356
BglI	GCCNNNNNGGC	2 cut(s)	308, 679
BlnI	CCTAGG	1 cut(s)	205
Bme18I	GGWCC	4 cut(s)	563, 665, 728, 788
BmsI	GCATC	6 cut(s)	15, 417, 510, 630, 741, 748
BoxI	GACNNNNGTC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpuMI	CCSGG	8 cut(s)	318, 329, 378, 392, 420, 488, 534, 717
BsaAI	YACGTR	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bse118I	RCCGGY	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	366
Bse21I	CCTNAGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	756
BseMII	CTCAG	3 cut(s)	281, 650, 839
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	5 cut(s)	152, 209, 255, 693, 747
BseSI	GKGCMC	5 cut(s)	260, 414, 545, 632, 698
BseXI	GCAGC	4 cut(s)	15, 88, 442, 478
Bsh1236I	CGCG	3 cut(s)	189, 225, 559
Bsh1285I	CGRYCG	4 cut(s)	73, 106, 196, 340
BsiEI	CGRYCG	4 cut(s)	73, 106, 196, 340
BsiHKAI	GWGCWC	1 cut(s)	20
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	2 cut(s)	54, 810
Bso31I	GGTCTC	1 cut(s)	386
Bsp120I	GGGCCC	5 cut(s)	256, 410, 541, 628, 694
Bsp1286I	GDGCHC	6 cut(s)	20, 260, 414, 545, 632, 698
Bsp143I	GATC	3 cut(s)	60, 103, 237
BspCNI	CTCAG	3 cut(s)	280, 649, 838
BspFNI	CGCG	3 cut(s)	189, 225, 559
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	2 cut(s)	8, 167
BspTNI	GGTCTC	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	335
BssMI	GATC	3 cut(s)	60, 103, 237
BssT1I	CCWWGG	2 cut(s)	205, 285
Bst4CI	ACNGT	4 cut(s)	71, 197, 250, 591
Bst6I	CTCTTC	4 cut(s)	8, 167, 225, 267
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	5 cut(s)	149, 295, 313, 414, 722
BstDEI	CTNAG	3 cut(s)	267, 636, 825
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	756
BstFNI	CGCG	3 cut(s)	189, 225, 559
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	3 cut(s)	299, 472, 559
BstKTI	GATC	3 cut(s)	63, 106, 240
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	3 cut(s)	60, 103, 237
BstMCI	CGRYCG	4 cut(s)	73, 106, 196, 340
BstNSI	RCATGY	1 cut(s)	724
BstPAI	GACNNNNGTC	1 cut(s)	195
BstSLI	GKGCMC	5 cut(s)	260, 414, 545, 632, 698
BstUI	CGCG	3 cut(s)	189, 225, 559
BstV1I	GCAGC	4 cut(s)	15, 88, 442, 478
Bsu36I	CCTNAGG	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	356
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	756
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 359
Cac8I	GCNNGC	5 cut(s)	149, 295, 313, 414, 722
CfoI	GCGC	3 cut(s)	299, 472, 559
Cfr10I	RCCGGY	1 cut(s)	335
Cfr42I	CCGCGG	1 cut(s)	226
CsiI	ACCWGGT	1 cut(s)	763
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	5 cut(s)	94, 112, 244, 424, 721
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	3 cut(s)	267, 636, 825
DpnI	GATC	3 cut(s)	62, 105, 239
DpnII	GATC	3 cut(s)	60, 103, 237
DraIII	CACNNNGTG	1 cut(s)	767
DrdI	GACNNNNNNGTC	1 cut(s)	795
DseDI	GACNNNNNNGTC	1 cut(s)	795
Eam1104I	CTCTTC	4 cut(s)	8, 167, 225, 267
EarI	CTCTTC	4 cut(s)	8, 167, 225, 267
EciI	GGCGGA	3 cut(s)	498, 660, 696
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	205, 285
Eco147I	AGGCCT	1 cut(s)	601
Eco24I	GRGCYC	6 cut(s)	20, 260, 414, 545, 632, 698
Eco31I	GGTCTC	1 cut(s)	386
Eco32I	GATATC	1 cut(s)	530
Eco47I	GGWCC	4 cut(s)	563, 665, 728, 788
Eco53kI	GAGCTC	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	281
Eco81I	CCTNAGG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	18
EcoO109I	RGGNCCY	5 cut(s)	256, 541, 628, 665, 694
EcoRV	GATATC	1 cut(s)	530
EcoT14I	CCWWGG	2 cut(s)	205, 285
EcoT38I	GRGCYC	6 cut(s)	20, 260, 414, 545, 632, 698
ErhI	CCWWGG	2 cut(s)	205, 285
FaeI	CATG	5 cut(s)	97, 115, 247, 427, 724
FaiI	YATR	7 cut(s)	38, 95, 113, 245, 425, 479, 722
FatI	CATG	5 cut(s)	93, 111, 243, 423, 720
FauI	CCCGC	3 cut(s)	162, 421, 552
FokI	GGATG	1 cut(s)	763
FriOI	GRGCYC	6 cut(s)	20, 260, 414, 545, 632, 698
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	3 cut(s)	298, 471, 558
HaeII	RGCGCY	1 cut(s)	300
HhaI	GCGC	3 cut(s)	299, 472, 559
Hin1II	CATG	5 cut(s)	97, 115, 247, 427, 724
Hin6I	GCGC	3 cut(s)	297, 470, 557
HinP1I	GCGC	3 cut(s)	297, 470, 557
HinfI	GANTC	3 cut(s)	210, 275, 502
HphI	GGTGA	3 cut(s)	239, 247, 511
Hpy166II	GTNNAC	2 cut(s)	566, 731
Hpy188I	TCNGA	4 cut(s)	459, 597, 639, 828
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	2 cut(s)	566, 731
Hpy99I	CGWCG	4 cut(s)	86, 194, 201, 254
HpyAV	CCTTC	2 cut(s)	109, 157
HpyCH4III	ACNGT	4 cut(s)	71, 197, 250, 591
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	4 cut(s)	31, 430, 619, 643
HpyF3I	CTNAG	3 cut(s)	267, 636, 825
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	5 cut(s)	97, 115, 247, 427, 724
HspAI	GCGC	3 cut(s)	297, 470, 557
KspI	CCGCGG	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	60, 103, 237
LguI	GCTCTTC	2 cut(s)	8, 167
LmnI	GCTCC	4 cut(s)	23, 156, 361, 499
Lsp1109I	GCAGC	4 cut(s)	15, 88, 442, 478
LweI	GCATC	6 cut(s)	15, 417, 510, 630, 741, 748
MabI	ACCWGGT	1 cut(s)	763
MaeI	CTAG	1 cut(s)	206
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	55, 276
MalI	GATC	3 cut(s)	62, 105, 239
MboI	GATC	3 cut(s)	60, 103, 237
MboII	GAAGA	4 cut(s)	25, 184, 242, 284
MhlI	GDGCHC	6 cut(s)	20, 260, 414, 545, 632, 698
MluCI	AATT	2 cut(s)	32, 620
MlyI	GAGTC	2 cut(s)	204, 284
MspA1I	CMGCKG	1 cut(s)	225
Mva1269I	GAATGC	2 cut(s)	54, 810
MvnI	CGCG	3 cut(s)	189, 225, 559
NciI	CCSGG	8 cut(s)	318, 329, 378, 392, 420, 488, 534, 717
NdeII	GATC	3 cut(s)	60, 103, 237
NlaIII	CATG	5 cut(s)	97, 115, 247, 427, 724
NmuCI	GTSAC	2 cut(s)	55, 276
NspI	RCATGY	1 cut(s)	724
PaeI	GCATGC	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	601
PciSI	GCTCTTC	2 cut(s)	8, 167
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 186, 193
PctI	GAATGC	2 cut(s)	54, 810
PfeI	GAWTC	1 cut(s)	502
PflMI	CCANNNNNTGG	2 cut(s)	572, 767
PfoI	TCCNGGA	1 cut(s)	799
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	2 cut(s)	204, 283
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	2 cut(s)	204, 283
Ppu21I	YACGTR	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	665
PshAI	GACNNNNGTC	1 cut(s)	195
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	665
PspCI	CACGTG	1 cut(s)	281
PspOMI	GGGCCC	5 cut(s)	256, 410, 541, 628, 694
PspPPI	RGGWCCY	1 cut(s)	665
PvuI	CGATCG	1 cut(s)	106
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	226
SapI	GCTCTTC	2 cut(s)	8, 167
Sau3AI	GATC	3 cut(s)	60, 103, 237
SchI	GAGTC	2 cut(s)	204, 284
SduI	GDGCHC	6 cut(s)	20, 260, 414, 545, 632, 698
SexAI	ACCWGGT	1 cut(s)	763
SfaNI	GCATC	6 cut(s)	15, 417, 510, 630, 741, 748
Sfr303I	CCGCGG	1 cut(s)	226
SgrBI	CCGCGG	1 cut(s)	226
SinI	GGWCC	4 cut(s)	563, 665, 728, 788
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	2 cut(s)	32, 620
SseBI	AGGCCT	1 cut(s)	601
SspMI	CTAG	1 cut(s)	206
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	601
StyI	CCWWGG	2 cut(s)	205, 285
TaaI	ACNGT	4 cut(s)	71, 197, 250, 591
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	8 cut(s)	5, 11, 102, 199, 252, 340, 397, 712
TasI	AATT	2 cut(s)	32, 620
TauI	GCSGC	8 cut(s)	293, 302, 305, 335, 436, 475, 583, 676
TfiI	GAWTC	1 cut(s)	502
TscAI	CASTG	2 cut(s)	358, 366
TseFI	GTSAC	2 cut(s)	55, 276
TseI	GCWGC	6 cut(s)	28, 76, 430, 491, 847, 850
Tsp45I	GTSAC	2 cut(s)	55, 276
TspDTI	ATGAA	3 cut(s)	25, 82, 128
TspRI	CASTG	2 cut(s)	358, 366
Van91I	CCANNNNNTGG	2 cut(s)	572, 767
VpaK11BI	GGWCC	4 cut(s)	563, 665, 728, 788
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmaJI	CCTAGG	1 cut(s)	205
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.