Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8453239.1

Orthogroup ID

OG0001710

Physical Location & Seq

Genomic Coordinates Forward (+)

117 .. 923

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8453239.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgtcgatgtcgaagagctccaagatgctccagttcatcaactaccgcatgagagtgacgatccaggacggccgtcagctcgtcggaaagttcatggccttcgaccgccacatgaacctcgtcctcggcgactgcgaggagttccggaagcttcctccggccaaaggcgccgccgccaagaagaacaccaacaccaacgaggaccgcgacgaccgccgcactctcggcctcgtcctcctccgcggcgaggaggtcatctccatgaccgtcgagggcccgccgcctcaggaggagtcacgcgccaaggccgcgagtgccgccgctctttccggctccggaatcggacgcgccgccggcagggggatcgtaactcctcccgtggcccaggcccagcccggtctctccggccccgtccgcggcgtcggcgggcccgcccccggcatgatgcaacctcagatgtctcgccctaacctctcggcgcctccgatgacgtatccggctgctccggtgatccgccccccgccgcagatgtatcccggccagggaccaccaccgatggtgcgtggcccgccgccgcagtttcctcctcccggtgctaggcccggcggtccacctcagcagtttcccggtcctccgatgcagtatgggcagcgaccaatggggcctccaccgccggggcctccggggcagatgatgaggggtccaccacctcgccaaggaatgccgcctcctcccggtgtgtttggaggacctccacgtggaatgccgccaccgcctcagaaccctaaccagcagcagcaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

268

Amino Acids

28.35

Weight (kDa)

11.03

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT5G44500 AT5G44500
fragaria_vesca	FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920
malus_domestica	MD04G1002600.v1.1 MD04G1223300.v1.1 MD06G1169400.v1.1 MD14G1174700.v1.1
prunus_persica	Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.6G342400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451231 RchiOBHm_Chr7g0192911
rosa_laevigata	RLG00000004313 RLG00000025677
rosa_multiflora	Rmu_co8453239.1_g000001 Rmu_sc0002040.1_g000055 Rmu_sc0002575.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262550 Rroxscaffold_6G00428690
rosa_rugosa	Rorug02G0632700 Rorug07G0005600 Rorug07G0005700 Rorug07G0005800 Rorug07G0005800 Rorug07G0005800
rosa_samantha	Rh3AG035200 Rh3BG035700 Rh3CG034300 Rh3DG035300 Rh7AG131300 Rh7BG132100 Rh7BG447000 Rh7BG447200 Rh7CG135400 Rh7DG133200
rosa_wichuraiana	Rw3G002600 Rw7G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 478
AccBSI	CCGCTC	1 cut(s)	323
AccII	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
AccIII	TCCGGA	2 cut(s)	144, 335
AclWI	GGATC	3 cut(s)	55, 371, 505
AcoI	YGGCCR	3 cut(s)	70, 159, 538
AcvI	CACGTG	1 cut(s)	758
AcyI	GRCGYC	3 cut(s)	168, 420, 479
AjnI	CCWGG	3 cut(s)	63, 384, 540
AluBI	AGCT	3 cut(s)	18, 79, 151
AluI	AGCT	3 cut(s)	18, 79, 151
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	404, 465
AlwI	GGATC	3 cut(s)	55, 371, 505
Aor13HI	TCCGGA	2 cut(s)	144, 335
ApaI	GGGCCC	2 cut(s)	278, 432
ApeKI	GCWGC	4 cut(s)	500, 649, 793, 796
AspLEI	GCGC	4 cut(s)	170, 302, 350, 481
AsuC2I	CCSGG	9 cut(s)	396, 438, 537, 591, 603, 627, 675, 684, 735
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	6 cut(s)	202, 545, 608, 629, 701, 749
AxyI	CCTNAGG	1 cut(s)	285
BaeGI	GKGCMC	2 cut(s)	278, 432
BanI	GGYRCC	2 cut(s)	167, 478
BanII	GRGCYC	3 cut(s)	20, 278, 432
BbrPI	CACGTG	1 cut(s)	758
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	2 cut(s)	487, 661
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	2 cut(s)	57, 85
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	3 cut(s)	65, 386, 542
BciVI	GTATCC	2 cut(s)	504, 543
BcnI	CCSGG	9 cut(s)	396, 438, 537, 591, 603, 627, 675, 684, 735
BcoDI	GTCTC	2 cut(s)	404, 465
BfaI	CTAG	1 cut(s)	597
BfoI	RGCGCY	2 cut(s)	171, 482
BfuI	GTATCC	2 cut(s)	504, 543
BglI	GCCNNNNNGGC	1 cut(s)	685
Bme18I	GGWCC	6 cut(s)	202, 545, 608, 629, 701, 749
BmsI	GCATC	3 cut(s)	15, 435, 627
BoxI	GACNNNNGTC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	615
BpuMI	CCSGG	9 cut(s)	396, 438, 537, 591, 603, 627, 675, 684, 735
BsaAI	YACGTR	1 cut(s)	758
BsaHI	GRCGYC	3 cut(s)	168, 420, 479
BsaI	GGTCTC	1 cut(s)	404
BsaWI	WCCGGW	3 cut(s)	144, 335, 505
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	31
Bse21I	CCTNAGG	1 cut(s)	285
BseAI	TCCGGA	2 cut(s)	144, 335
BseBI	CCWGG	3 cut(s)	65, 386, 542
BseMII	CTCAG	4 cut(s)	299, 467, 629, 791
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	7 cut(s)	152, 227, 263, 305, 363, 576, 720
BseSI	GKGCMC	2 cut(s)	278, 432
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	487, 661
BseYI	CCCAGC	1 cut(s)	390
Bsh1236I	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
Bsh1285I	CGRYCG	3 cut(s)	73, 106, 214
BshNI	GGYRCC	2 cut(s)	167, 478
BsiEI	CGRYCG	3 cut(s)	73, 106, 214
BsiHKAI	GWGCWC	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	558
BsmAI	GTCTC	2 cut(s)	404, 465
BsmFI	GGGAC	1 cut(s)	558
BsmI	GAATGC	2 cut(s)	726, 768
Bso31I	GGTCTC	1 cut(s)	404
Bsp120I	GGGCCC	2 cut(s)	274, 428
Bsp1286I	GDGCHC	3 cut(s)	20, 278, 432
Bsp13I	TCCGGA	2 cut(s)	144, 335
Bsp143I	GATC	3 cut(s)	60, 363, 510
BspCNI	CTCAG	4 cut(s)	298, 466, 628, 790
BspEI	TCCGGA	2 cut(s)	144, 335
BspFNI	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
BspPI	GGATC	3 cut(s)	55, 371, 505
BspQI	GCTCTTC	1 cut(s)	8
BspT107I	GGYRCC	2 cut(s)	167, 478
BspTNI	GGTCTC	1 cut(s)	404
BsrBI	CCGCTC	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	353
BssMI	GATC	3 cut(s)	60, 363, 510
BssNI	GRCGYC	3 cut(s)	168, 420, 479
BssT1I	CCWWGG	2 cut(s)	303, 715
Bst2UI	CCWGG	3 cut(s)	65, 386, 542
Bst4CI	ACNGT	2 cut(s)	268, 804
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	3 cut(s)	168, 420, 479
BstBAI	YACGTR	1 cut(s)	758
BstC8I	GCNNGC	5 cut(s)	278, 355, 428, 432, 569
BstDEI	CTNAG	4 cut(s)	285, 453, 615, 777
BstDSI	CCRYGG	3 cut(s)	241, 378, 415
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstFNI	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
BstH2I	RGCGCY	2 cut(s)	171, 482
BstHHI	GCGC	4 cut(s)	170, 302, 350, 481
BstKTI	GATC	3 cut(s)	63, 366, 513
BstMAI	GTCTC	2 cut(s)	404, 465
BstMBI	GATC	3 cut(s)	60, 363, 510
BstMCI	CGRYCG	3 cut(s)	73, 106, 214
BstNI	CCWGG	3 cut(s)	65, 386, 542
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSLI	GKGCMC	2 cut(s)	278, 432
BstUI	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
BstV1I	GCAGC	2 cut(s)	487, 661
BstZI	CGGCCG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	285
BsuI	GTATCC	2 cut(s)	504, 543
BtgI	CCRYGG	3 cut(s)	241, 378, 415
Cac8I	GCNNGC	5 cut(s)	278, 355, 428, 432, 569
CfoI	GCGC	4 cut(s)	170, 302, 350, 481
Cfr10I	RCCGGY	1 cut(s)	353
Cfr42I	CCGCGG	2 cut(s)	244, 418
CseI	GACGC	2 cut(s)	354, 409
CviAII	CATG	5 cut(s)	49, 94, 112, 262, 442
DdeI	CTNAG	4 cut(s)	285, 453, 615, 777
DinI	GGCGCC	2 cut(s)	169, 480
DpnI	GATC	3 cut(s)	62, 365, 512
DpnII	GATC	3 cut(s)	60, 363, 510
EaeI	YGGCCR	3 cut(s)	70, 159, 538
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	303, 715
Eco24I	GRGCYC	3 cut(s)	20, 278, 432
Eco31I	GGTCTC	1 cut(s)	404
Eco47I	GGWCC	6 cut(s)	202, 545, 608, 629, 701, 749
Eco52I	CGGCCG	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	758
Eco81I	CCTNAGG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoO109I	RGGNCCY	4 cut(s)	274, 662, 677, 749
EcoRII	CCWGG	3 cut(s)	63, 384, 540
EcoT14I	CCWWGG	2 cut(s)	303, 715
EcoT38I	GRGCYC	3 cut(s)	20, 278, 432
EgeI	GGCGCC	2 cut(s)	169, 480
EheI	GGCGCC	2 cut(s)	169, 480
ErhI	CCWWGG	2 cut(s)	303, 715
FaeI	CATG	5 cut(s)	52, 97, 115, 265, 445
FaiI	YATR	6 cut(s)	50, 95, 113, 263, 443, 645
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	5 cut(s)	48, 93, 111, 261, 441
FauI	CCCGC	5 cut(s)	285, 419, 439, 528, 576
FriOI	GRGCYC	3 cut(s)	20, 278, 432
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	4 cut(s)	169, 301, 349, 480
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	14
HaeII	RGCGCY	2 cut(s)	171, 482
HgaI	GACGC	2 cut(s)	354, 409
HhaI	GCGC	4 cut(s)	170, 302, 350, 481
Hin1I	GRCGYC	3 cut(s)	168, 420, 479
Hin1II	CATG	5 cut(s)	52, 97, 115, 265, 445
Hin6I	GCGC	4 cut(s)	168, 300, 348, 479
HinP1I	GCGC	4 cut(s)	168, 300, 348, 479
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	293, 339
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	611, 704
Hpy188I	TCNGA	6 cut(s)	86, 344, 456, 486, 636, 780
Hpy188III	TCNNGA	3 cut(s)	145, 287, 336
Hpy8I	GTNNAC	2 cut(s)	611, 704
Hpy99I	CGWCG	4 cut(s)	86, 212, 272, 425
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	268, 804
HpyCH4IV	ACGT	2 cut(s)	491, 757
HpyCH4V	TGCA	2 cut(s)	448, 640
HpyF3I	CTNAG	4 cut(s)	285, 453, 615, 777
HpySE526I	ACGT	2 cut(s)	491, 757
Hsp92I	GRCGYC	3 cut(s)	168, 420, 479
Hsp92II	CATG	5 cut(s)	52, 97, 115, 265, 445
HspAI	GCGC	4 cut(s)	168, 300, 348, 479
KasI	GGCGCC	2 cut(s)	167, 478
Kpn2I	TCCGGA	2 cut(s)	144, 335
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
KspI	CCGCGG	2 cut(s)	244, 418
Kzo9I	GATC	3 cut(s)	60, 363, 510
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	4 cut(s)	23, 33, 338, 508
Lsp1109I	GCAGC	2 cut(s)	487, 661
LweI	GCATC	3 cut(s)	15, 435, 627
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	2 cut(s)	491, 757
MaeIII	GTNAC	3 cut(s)	55, 294, 367
MalI	GATC	3 cut(s)	62, 365, 512
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	3 cut(s)	60, 363, 510
MboII	GAAGA	2 cut(s)	25, 193
MhlI	GDGCHC	3 cut(s)	20, 278, 432
Mly113I	GGCGCC	2 cut(s)	168, 479
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	64
MroI	TCCGGA	2 cut(s)	144, 335
MroNI	GCCGGC	1 cut(s)	353
MslI	CAYNNNNRTG	2 cut(s)	53, 260
MspA1I	CMGCKG	2 cut(s)	243, 417
Mva1269I	GAATGC	2 cut(s)	726, 768
MvaI	CCWGG	3 cut(s)	65, 386, 542
MvnI	CGCG	6 cut(s)	207, 243, 300, 311, 348, 417
NaeI	GCCGGC	1 cut(s)	355
NarI	GGCGCC	2 cut(s)	168, 479
NciI	CCSGG	9 cut(s)	396, 438, 537, 591, 603, 627, 675, 684, 735
NdeII	GATC	3 cut(s)	60, 363, 510
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	5 cut(s)	52, 97, 115, 265, 445
NmeAIII	GCCGAG	3 cut(s)	105, 204, 455
NmuCI	GTSAC	2 cut(s)	55, 294
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	4 cut(s)	126, 132, 204, 482
PctI	GAATGC	2 cut(s)	726, 768
PdiI	GCCGGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	339
PfoI	TCCNGGA	1 cut(s)	63
PleI	GAGTC	1 cut(s)	301
PluTI	GGCGCC	2 cut(s)	171, 482
PmaCI	CACGTG	1 cut(s)	758
PmlI	CACGTG	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	758
PpuMI	RGGWCCY	1 cut(s)	749
PshAI	GACNNNNGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	63, 384, 540
PspCI	CACGTG	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	3 cut(s)	63, 384, 540
PspOMI	GGGCCC	2 cut(s)	274, 428
PspPPI	RGGWCCY	1 cut(s)	749
RseI	CAYNNNNRTG	2 cut(s)	53, 260
SacI	GAGCTC	1 cut(s)	20
SacII	CCGCGG	2 cut(s)	244, 418
SapI	GCTCTTC	1 cut(s)	8
Sau3AI	GATC	3 cut(s)	60, 363, 510
SchI	GAGTC	1 cut(s)	302
SduI	GDGCHC	3 cut(s)	20, 278, 432
SfaNI	GCATC	3 cut(s)	15, 435, 627
SfoI	GGCGCC	2 cut(s)	169, 480
Sfr303I	CCGCGG	2 cut(s)	244, 418
SgrBI	CCGCGG	2 cut(s)	244, 418
SinI	GGWCC	6 cut(s)	202, 545, 608, 629, 701, 749
SmiMI	CAYNNNNRTG	2 cut(s)	53, 260
SspDI	GGCGCC	2 cut(s)	167, 478
SspMI	CTAG	1 cut(s)	597
SstI	GAGCTC	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	303, 715
TaaI	ACNGT	2 cut(s)	268, 804
TaiI	ACGT	2 cut(s)	494, 760
TaqI	TCGA	4 cut(s)	5, 11, 102, 270
TfiI	GAWTC	1 cut(s)	339
TseFI	GTSAC	2 cut(s)	55, 294
TseI	GCWGC	4 cut(s)	500, 649, 793, 796
Tsp45I	GTSAC	2 cut(s)	55, 294
TspDTI	ATGAA	3 cut(s)	25, 82, 128
VpaK11BI	GGWCC	6 cut(s)	202, 545, 608, 629, 701, 749
XagI	CCTNNNNNAGG	1 cut(s)	714
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.