Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001710

Physical Location & Seq

Genomic Coordinates Forward (+)

29515819 .. 29517265

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G342400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTCGATGTCGAAGAGCTCCAAGATGCTGCAATTCATAAACTACCGCATGAGGGTGACGATCCAGGACGGTCGTCAGCTCGTCGGTAAGTTCATGGCCTTCGACCGCCACATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGCAAGCTCCCTCCTCTCAAAGGCAACAAGAACGAGGAACGCGACGACCGCCGAACCCTAGGCCTCGTCCTCCTCCGCGGCGAAGAGGTTGTATCCATGACCGTCGAGGGCCCACCTCCCCAGGAAGAATCCCGCGCCAAGGCCGCCAGCGCCGCCGCCTTAGCAGGCCCGGGAGTCGGCCGGGCCGCCGGTCGTGGCATCCCAACCGCCCCGCTCGCCCAGGCCCAGCCAGGTCTCTCCGGCCCGGTTCGTGGCGTCGGCGGGCCCGCCCCCGGCATGATGCAGCCTCAGATTTCTCGGCCACCACAGATGTCTGCGCCGCCCATGTCGTACCCAGCTGCGCCGGTGATTCGTCCACCTCCAGGTCAGATGGCTCCGTACCCTGGACAGGGGCCGCCGCAAATGGTGCGGGGCCCGCCACCTGGGGTGCCTCCTCCGCAGTTTGCTAGGCCTGGTGGGCCGGGCCCGCCGCAGCAATTCCCGGGACCACCACCAATGCAGTTCGGGCAGAGGCCGATGGGACCTCCGCCTCAGATGATGAGGGGACCGCCGCCGCCGCCCCGTCCTGGAATGCCTCCTCCCCCCGGTGGTGGTGTTCCTGTGTATGGACCGCCTCGTCCAGGCATGCCGCCTCCTCCACCCAACCAGCAGAACCAACAGCAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05322 map03040 map05322

Pfam Domains

Protein Families

LSM

Protein Analysis

271

Amino Acids

28.52

Weight (kDa)

11.02

Isoelectric Point (pI)

74.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT4G20440 AT5G44500 AT5G44500
fragaria_vesca	FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920 FvH4_5g05920
malus_domestica	MD04G1002600.v1.1 MD04G1223300.v1.1 MD06G1169400.v1.1 MD14G1174700.v1.1
prunus_persica	Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.5G168200_v2.0.a1 Prupe.6G342400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0451231 RchiOBHm_Chr7g0192911
rosa_laevigata	RLG00000004313 RLG00000025677
rosa_multiflora	Rmu_co8453239.1_g000001 Rmu_sc0002040.1_g000055 Rmu_sc0002575.1_g000020
rosa_roxburghii	Rroxscaffold_3G00262550 Rroxscaffold_6G00428690
rosa_rugosa	Rorug02G0632700 Rorug07G0005600 Rorug07G0005700 Rorug07G0005800 Rorug07G0005800 Rorug07G0005800
rosa_samantha	Rh3AG035200 Rh3BG035700 Rh3CG034300 Rh3DG035300 Rh7AG131300 Rh7BG132100 Rh7BG447000 Rh7BG447200 Rh7CG135400 Rh7DG133200
rosa_wichuraiana	Rw3G002600 Rw7G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	759
AccB1I	GGYRCC	1 cut(s)	571
AccBSI	CCGCTC	1 cut(s)	358
AccII	CGCG	3 cut(s)	186, 222, 279
AclWI	GGATC	1 cut(s)	55
AcoI	YGGCCR	2 cut(s)	322, 443
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	2 cut(s)	476, 524
AluBI	AGCT	4 cut(s)	18, 79, 151, 482
AluI	AGCT	4 cut(s)	18, 79, 151, 482
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	55
Ama87I	CYCGRG	2 cut(s)	313, 625
ApaI	GGGCCC	4 cut(s)	257, 411, 560, 611
ApeKI	GCWGC	4 cut(s)	28, 427, 482, 616
AspA2I	CCTAGG	1 cut(s)	202
AspLEI	GCGC	4 cut(s)	281, 296, 463, 487
AsuC2I	CCSGG	9 cut(s)	314, 315, 326, 389, 417, 606, 626, 627, 729
AsuHPI	GGTGA	2 cut(s)	67, 502
AvaI	CYCGRG	2 cut(s)	313, 625
AvaII	GGWCC	4 cut(s)	629, 665, 689, 752
AvrII	CCTAGG	1 cut(s)	202
BaeGI	GKGCMC	4 cut(s)	257, 411, 560, 611
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	5 cut(s)	20, 257, 411, 560, 611
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	4 cut(s)	15, 439, 469, 628
BccI	CCATC	2 cut(s)	508, 655
BciVI	GTATCC	1 cut(s)	247
BcnI	CCSGG	9 cut(s)	314, 315, 326, 389, 417, 606, 626, 627, 729
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	203, 591
BfoI	RGCGCY	1 cut(s)	297
BfuI	GTATCC	1 cut(s)	247
BglI	GCCNNNNNGGC	1 cut(s)	601
BlnI	CCTAGG	1 cut(s)	202
Bme18I	GGWCC	4 cut(s)	629, 665, 689, 752
BmeT110I	CYCGRG	2 cut(s)	313, 625
BmsI	GCATC	3 cut(s)	15, 351, 414
BoxI	GACNNNNGTC	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	304
BpuMI	CCSGG	9 cut(s)	314, 315, 326, 389, 417, 606, 626, 627, 729
BsaHI	GRCGYC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	383
Bse118I	RCCGGY	2 cut(s)	332, 487
BseGI	GGATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	446, 689
BseRI	GAGGAG	6 cut(s)	147, 152, 206, 567, 711, 768
BseSI	GKGCMC	4 cut(s)	257, 411, 560, 611
BseX3I	CGGCCG	1 cut(s)	322
BseXI	GCAGC	4 cut(s)	15, 439, 469, 628
BseYI	CCCAGC	2 cut(s)	369, 478
Bsh1236I	CGCG	3 cut(s)	186, 222, 279
Bsh1285I	CGRYCG	5 cut(s)	73, 106, 193, 325, 337
BshNI	GGYRCC	1 cut(s)	571
BsiEI	CGRYCG	5 cut(s)	73, 106, 193, 325, 337
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	2 cut(s)	313, 625
BslFI	GGGAC	3 cut(s)	642, 678, 702
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	3 cut(s)	642, 678, 702
BsmI	GAATGC	1 cut(s)	720
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	2 cut(s)	313, 625
Bsp120I	GGGCCC	4 cut(s)	253, 407, 556, 607
Bsp1286I	GDGCHC	5 cut(s)	20, 257, 411, 560, 611
Bsp143I	GATC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	445, 688
BspFNI	CGCG	3 cut(s)	186, 222, 279
BspPI	GGATC	1 cut(s)	55
BspQI	GCTCTTC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	571
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	1 cut(s)	358
BsrFI	RCCGGY	2 cut(s)	332, 487
BssAI	RCCGGY	2 cut(s)	332, 487
BssMI	GATC	1 cut(s)	60
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	202, 282
Bst4CI	ACNGT	3 cut(s)	71, 247, 810
Bst6I	CTCTTC	2 cut(s)	8, 222
BstACI	GRCGYC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstC8I	GCNNGC	9 cut(s)	149, 292, 310, 360, 407, 411, 560, 611, 770
BstDEI	CTNAG	3 cut(s)	304, 432, 675
BstDSI	CCRYGG	1 cut(s)	220
BstENI	CCTNNNNNAGG	2 cut(s)	162, 762
BstF5I	GGATG	1 cut(s)	342
BstFNI	CGCG	3 cut(s)	186, 222, 279
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	4 cut(s)	281, 296, 463, 487
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	60
BstMCI	CGRYCG	5 cut(s)	73, 106, 193, 325, 337
BstNSI	RCATGY	1 cut(s)	772
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSLI	GKGCMC	4 cut(s)	257, 411, 560, 611
BstUI	CGCG	3 cut(s)	186, 222, 279
BstV1I	GCAGC	4 cut(s)	15, 439, 469, 628
BstZI	CGGCCG	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	247
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	342
Cac8I	GCNNGC	9 cut(s)	149, 292, 310, 360, 407, 411, 560, 611, 770
CfoI	GCGC	4 cut(s)	281, 296, 463, 487
Cfr10I	RCCGGY	2 cut(s)	332, 487
Cfr42I	CCGCGG	1 cut(s)	223
Cfr9I	CCCGGG	2 cut(s)	313, 625
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	475, 523
CviAII	CATG	7 cut(s)	49, 94, 112, 241, 421, 469, 769
CviQI	GTAC	2 cut(s)	475, 523
DdeI	CTNAG	3 cut(s)	304, 432, 675
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DrdI	GACNNNNNNGTC	1 cut(s)	759
DseDI	GACNNNNNNGTC	1 cut(s)	759
EaeI	YGGCCR	2 cut(s)	322, 443
EagI	CGGCCG	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	8, 222
EarI	CTCTTC	2 cut(s)	8, 222
EciI	GGCGGA	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	18
EclXI	CGGCCG	1 cut(s)	322
Eco130I	CCWWGG	2 cut(s)	202, 282
Eco147I	AGGCCT	2 cut(s)	207, 595
Eco24I	GRGCYC	5 cut(s)	20, 257, 411, 560, 611
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	4 cut(s)	629, 665, 689, 752
Eco52I	CGGCCG	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	18
Eco88I	CYCGRG	2 cut(s)	313, 625
EcoICRI	GAGCTC	1 cut(s)	18
EcoNI	CCTNNNNNAGG	2 cut(s)	162, 762
EcoO109I	RGGNCCY	3 cut(s)	253, 556, 665
EcoT14I	CCWWGG	2 cut(s)	202, 282
EcoT38I	GRGCYC	5 cut(s)	20, 257, 411, 560, 611
ErhI	CCWWGG	2 cut(s)	202, 282
FaeI	CATG	7 cut(s)	52, 97, 115, 244, 424, 472, 772
FaiI	YATR	9 cut(s)	38, 50, 95, 113, 242, 422, 470, 750, 770
FaqI	GGGAC	3 cut(s)	642, 678, 702
FatI	CATG	7 cut(s)	48, 93, 111, 240, 420, 468, 768
FauI	CCCGC	7 cut(s)	284, 363, 398, 418, 546, 567, 618
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	5 cut(s)	20, 257, 411, 560, 611
FspBI	CTAG	2 cut(s)	203, 591
GlaI	GCGC	4 cut(s)	280, 295, 462, 486
GsaI	CCCAGC	2 cut(s)	373, 482
GsuI	CTGGAG	1 cut(s)	489
HaeII	RGCGCY	1 cut(s)	297
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	4 cut(s)	281, 296, 463, 487
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	7 cut(s)	52, 97, 115, 244, 424, 472, 772
Hin6I	GCGC	4 cut(s)	279, 294, 461, 485
HinP1I	GCGC	4 cut(s)	279, 294, 461, 485
HinfI	GANTC	3 cut(s)	272, 318, 493
HphI	GGTGA	2 cut(s)	67, 502
Hpy166II	GTNNAC	1 cut(s)	500
Hpy188I	TCNGA	3 cut(s)	435, 513, 678
Hpy8I	GTNNAC	1 cut(s)	500
Hpy99I	CGWCG	4 cut(s)	86, 191, 251, 404
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	3 cut(s)	71, 247, 810
HpyCH4V	TGCA	3 cut(s)	31, 427, 643
HpyF3I	CTNAG	3 cut(s)	304, 432, 675
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	7 cut(s)	52, 97, 115, 244, 424, 472, 772
HspAI	GCGC	4 cut(s)	279, 294, 461, 485
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	23, 156, 523
Lsp1109I	GCAGC	4 cut(s)	15, 439, 469, 628
LweI	GCATC	3 cut(s)	15, 351, 414
MaeI	CTAG	2 cut(s)	203, 591
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	62
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	25, 239, 281
MhlI	GDGCHC	5 cut(s)	20, 257, 411, 560, 611
MluCI	AATT	2 cut(s)	32, 620
MlyI	GAGTC	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	2 cut(s)	222, 482
Mva1269I	GAATGC	1 cut(s)	720
MvnI	CGCG	3 cut(s)	186, 222, 279
NciI	CCSGG	9 cut(s)	314, 315, 326, 389, 417, 606, 626, 627, 729
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	7 cut(s)	52, 97, 115, 244, 424, 472, 772
NmeAIII	GCCGAG	2 cut(s)	105, 421
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	772
PceI	AGGCCT	2 cut(s)	207, 595
PciSI	GCTCTTC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 132, 183
PctI	GAATGC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	272, 493
PfoI	TCCNGGA	2 cut(s)	63, 709
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	665
PshAI	GACNNNNGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	665
PspFI	CCCAGC	2 cut(s)	369, 478
PspOMI	GGGCCC	4 cut(s)	253, 407, 556, 607
PspPPI	RGGWCCY	1 cut(s)	665
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	2 cut(s)	476, 524
RsaNI	GTAC	2 cut(s)	475, 523
RseI	CAYNNNNRTG	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	223
SapI	GCTCTTC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	327
SduI	GDGCHC	5 cut(s)	20, 257, 411, 560, 611
SfaNI	GCATC	3 cut(s)	15, 351, 414
SfiI	GGCCNNNNNGGCC	1 cut(s)	601
Sfr303I	CCGCGG	1 cut(s)	223
SgrAI	CRCCGGYG	1 cut(s)	487
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	4 cut(s)	629, 665, 689, 752
SmaI	CCCGGG	2 cut(s)	315, 627
SmiMI	CAYNNNNRTG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	772
Sse9I	AATT	2 cut(s)	32, 620
SseBI	AGGCCT	2 cut(s)	207, 595
SspMI	CTAG	2 cut(s)	203, 591
SstI	GAGCTC	1 cut(s)	20
StuI	AGGCCT	2 cut(s)	207, 595
StyI	CCWWGG	2 cut(s)	202, 282
TaaI	ACNGT	3 cut(s)	71, 247, 810
TaqI	TCGA	4 cut(s)	5, 11, 102, 249
TasI	AATT	2 cut(s)	32, 620
TfiI	GAWTC	2 cut(s)	272, 493
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	28, 427, 482, 616
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	25, 82, 128
TspGWI	ACGGA	1 cut(s)	510
TspMI	CCCGGG	2 cut(s)	313, 625
VpaK11BI	GGWCC	4 cut(s)	629, 665, 689, 752
XagI	CCTNNNNNAGG	2 cut(s)	162, 762
XceI	RCATGY	1 cut(s)	772
XmaI	CCCGGG	2 cut(s)	313, 625
XmaJI	CCTAGG	1 cut(s)	202
XspI	CTAG	2 cut(s)	203, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.